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PubMed:19789368 / 0-267 JSONTXT

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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-96 Sentence denotes Vitamin D receptor expression is associated with PIK3CA and KRAS mutations in colorectal cancer.
T2 97-185 Sentence denotes Vitamin D is associated with decreased risks of various cancers, including colon cancer.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
6516 0-18 GeneOrGeneProduct denotes Vitamin D receptor NCBIGene:7421
6517 49-55 GeneOrGeneProduct denotes PIK3CA NCBIGene:5290
6518 60-64 GeneOrGeneProduct denotes KRAS NCBIGene:3845
6519 78-95 DiseaseOrPhenotypicFeature denotes colorectal cancer MESH:D015179
6520 97-106 ChemicalEntity denotes Vitamin D MESH:D014807
6521 153-160 DiseaseOrPhenotypicFeature denotes cancers MESH:D009369
6522 172-184 DiseaseOrPhenotypicFeature denotes colon cancer MESH:D015179
6523 190-208 GeneOrGeneProduct denotes vitamin D receptor NCBIGene:7421
6524 210-213 GeneOrGeneProduct denotes VDR NCBIGene:7421

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 78-95 DiseaseOrPhenotypicFeature denotes colorectal cancer 0005575
T2 89-95 DiseaseOrPhenotypicFeature denotes cancer 0004992
T3 153-160 DiseaseOrPhenotypicFeature denotes cancers 0004992
T4 178-184 DiseaseOrPhenotypicFeature denotes cancer 0004992

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 0-18 GeneOrGeneProduct denotes Vitamin D receptor
T2 49-55 GeneOrGeneProduct denotes PIK3CA
T3 60-64 GeneOrGeneProduct denotes KRAS
T4 65-95 GeneOrGeneProduct denotes mutations in colorectal cancer
T5 190-208 GeneOrGeneProduct denotes vitamin D receptor
T6 210-213 GeneOrGeneProduct denotes VDR
T7 220-240 GeneOrGeneProduct denotes transcription factor

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 0-18 GeneOrGeneProduct denotes Vitamin D receptor
T2 49-55 GeneOrGeneProduct denotes PIK3CA
T3 60-64 GeneOrGeneProduct denotes KRAS
T4 65-95 GeneOrGeneProduct denotes mutations in colorectal cancer
T5 190-208 GeneOrGeneProduct denotes vitamin D receptor
T6 210-213 GeneOrGeneProduct denotes VDR
T7 220-240 GeneOrGeneProduct denotes transcription factor

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 78-95 DiseaseOrPhenotypicFeature denotes colorectal cancer D015179
T2 153-160 DiseaseOrPhenotypicFeature denotes cancers D009369
T3 172-184 DiseaseOrPhenotypicFeature denotes colon cancer D003110

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 0-18 GeneOrGeneProduct denotes Vitamin D receptor
T2 49-55 GeneOrGeneProduct denotes PIK3CA
T3 60-64 GeneOrGeneProduct denotes KRAS
T4 65-95 GeneOrGeneProduct denotes mutations in colorectal cancer
T5 190-208 GeneOrGeneProduct denotes vitamin D receptor
T6 210-213 GeneOrGeneProduct denotes VDR
T7 220-240 GeneOrGeneProduct denotes transcription factor

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 78-95 DiseaseOrPhenotypicFeature denotes colorectal cancer 0024331|0005575
T3 172-184 DiseaseOrPhenotypicFeature denotes colon cancer 0021063|0005575|0002032

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 78-95 DiseaseOrPhenotypicFeature denotes colorectal cancer D015179
T2 153-160 DiseaseOrPhenotypicFeature denotes cancers D009369
T3 172-184 DiseaseOrPhenotypicFeature denotes colon cancer D003110

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 78-95 DiseaseOrPhenotypicFeature denotes colorectal cancer D015179
T2 153-160 DiseaseOrPhenotypicFeature denotes cancers D009369
T3 172-184 DiseaseOrPhenotypicFeature denotes colon cancer D003110

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 0-9 ChemicalEntity denotes Vitamin D http://purl.obolibrary.org/obo/CHEBI_89324
T2 97-106 ChemicalEntity denotes Vitamin D http://purl.obolibrary.org/obo/CHEBI_89324
T3 190-199 ChemicalEntity denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T3 190-199 ChemicalEntity denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T2 97-106 ChemicalEntity denotes Vitamin D http://purl.obolibrary.org/obo/CHEBI_89324
T1 0-9 ChemicalEntity denotes Vitamin D http://purl.obolibrary.org/obo/CHEBI_89324
T58069 220-240 GeneOrGeneProduct denotes transcription factor
T6 210-213 GeneOrGeneProduct denotes VDR
T90802 190-208 GeneOrGeneProduct denotes vitamin D receptor
T97493 65-95 GeneOrGeneProduct denotes mutations in colorectal cancer
T35770 60-64 GeneOrGeneProduct denotes KRAS
T48336 49-55 GeneOrGeneProduct denotes PIK3CA
T52845 0-18 GeneOrGeneProduct denotes Vitamin D receptor
T56557 172-184 DiseaseOrPhenotypicFeature denotes colon cancer D003110
T80096 153-160 DiseaseOrPhenotypicFeature denotes cancers D009369
T23568 78-95 DiseaseOrPhenotypicFeature denotes colorectal cancer D015179

DisGeNET

Id Subject Object Predicate Lexical cue
T0 49-55 gene:5290 denotes PIK3CA
T1 78-95 disease:C0009402 denotes colorectal cancer
T2 49-55 gene:5290 denotes PIK3CA
T3 78-95 disease:C1527249 denotes colorectal cancer
T4 60-64 gene:3845 denotes KRAS
T5 78-95 disease:C0009402 denotes colorectal cancer
T6 60-64 gene:3845 denotes KRAS
T7 78-95 disease:C1527249 denotes colorectal cancer
R1 T0 T1 associated_with PIK3CA,colorectal cancer
R2 T2 T3 associated_with PIK3CA,colorectal cancer
R3 T4 T5 associated_with KRAS,colorectal cancer
R4 T6 T7 associated_with KRAS,colorectal cancer

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
19789368-0#0#18#gene7421 0-18 gene7421 denotes Vitamin D receptor
19789368-0#49#55#gene5290 49-55 gene5290 denotes PIK3CA
19789368-0#60#64#gene3845 60-64 gene3845 denotes KRAS
19789368-0#78#95#diseaseC0009402 78-95 diseaseC0009402 denotes colorectal cancer
19789368-0#78#95#diseaseC1527249 78-95 diseaseC1527249 denotes colorectal cancer
19789368-0#78#95#diseaseC0009402 78-95 diseaseC0009402 denotes colorectal cancer
19789368-0#78#95#diseaseC1527249 78-95 diseaseC1527249 denotes colorectal cancer
19789368-0#78#95#diseaseC0009402 78-95 diseaseC0009402 denotes colorectal cancer
19789368-0#78#95#diseaseC1527249 78-95 diseaseC1527249 denotes colorectal cancer
0#18#gene742178#95#diseaseC0009402 19789368-0#0#18#gene7421 19789368-0#78#95#diseaseC0009402 associated_with Vitamin D receptor,colorectal cancer
0#18#gene742178#95#diseaseC1527249 19789368-0#0#18#gene7421 19789368-0#78#95#diseaseC1527249 associated_with Vitamin D receptor,colorectal cancer
0#18#gene742178#95#diseaseC0009402 19789368-0#0#18#gene7421 19789368-0#78#95#diseaseC0009402 associated_with Vitamin D receptor,colorectal cancer
0#18#gene742178#95#diseaseC1527249 19789368-0#0#18#gene7421 19789368-0#78#95#diseaseC1527249 associated_with Vitamin D receptor,colorectal cancer
0#18#gene742178#95#diseaseC0009402 19789368-0#0#18#gene7421 19789368-0#78#95#diseaseC0009402 associated_with Vitamin D receptor,colorectal cancer
0#18#gene742178#95#diseaseC1527249 19789368-0#0#18#gene7421 19789368-0#78#95#diseaseC1527249 associated_with Vitamin D receptor,colorectal cancer
49#55#gene529078#95#diseaseC0009402 19789368-0#49#55#gene5290 19789368-0#78#95#diseaseC0009402 associated_with PIK3CA,colorectal cancer
49#55#gene529078#95#diseaseC1527249 19789368-0#49#55#gene5290 19789368-0#78#95#diseaseC1527249 associated_with PIK3CA,colorectal cancer
49#55#gene529078#95#diseaseC0009402 19789368-0#49#55#gene5290 19789368-0#78#95#diseaseC0009402 associated_with PIK3CA,colorectal cancer
49#55#gene529078#95#diseaseC1527249 19789368-0#49#55#gene5290 19789368-0#78#95#diseaseC1527249 associated_with PIK3CA,colorectal cancer
49#55#gene529078#95#diseaseC0009402 19789368-0#49#55#gene5290 19789368-0#78#95#diseaseC0009402 associated_with PIK3CA,colorectal cancer
49#55#gene529078#95#diseaseC1527249 19789368-0#49#55#gene5290 19789368-0#78#95#diseaseC1527249 associated_with PIK3CA,colorectal cancer
60#64#gene384578#95#diseaseC0009402 19789368-0#60#64#gene3845 19789368-0#78#95#diseaseC0009402 associated_with KRAS,colorectal cancer
60#64#gene384578#95#diseaseC1527249 19789368-0#60#64#gene3845 19789368-0#78#95#diseaseC1527249 associated_with KRAS,colorectal cancer
60#64#gene384578#95#diseaseC0009402 19789368-0#60#64#gene3845 19789368-0#78#95#diseaseC0009402 associated_with KRAS,colorectal cancer
60#64#gene384578#95#diseaseC1527249 19789368-0#60#64#gene3845 19789368-0#78#95#diseaseC1527249 associated_with KRAS,colorectal cancer
60#64#gene384578#95#diseaseC0009402 19789368-0#60#64#gene3845 19789368-0#78#95#diseaseC0009402 associated_with KRAS,colorectal cancer
60#64#gene384578#95#diseaseC1527249 19789368-0#60#64#gene3845 19789368-0#78#95#diseaseC1527249 associated_with KRAS,colorectal cancer