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PubMed:19048115 / 221-492 JSONTXT

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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T3 0-271 Sentence denotes Mutations of TP53 and dysfunction of the Brca1 and/or Brca2 tumor-suppressor proteins have been implicated in the molecular pathogenesis of a large fraction of OSCs, but frequent somatic mutations in other well-established tumor-suppressor genes have not been identified.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
5559 13-17 GeneOrGeneProduct denotes TP53 NCBIGene:7157
5560 41-46 GeneOrGeneProduct denotes Brca1 NCBIGene:672
5561 54-59 GeneOrGeneProduct denotes Brca2 NCBIGene:675
5562 60-65 DiseaseOrPhenotypicFeature denotes tumor MESH:D009369
5563 160-164 DiseaseOrPhenotypicFeature denotes OSCs MESH:D010051
5564 223-228 DiseaseOrPhenotypicFeature denotes tumor MESH:D009369

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T8 0-9 GeneOrGeneProduct denotes Mutations
T9 13-17 GeneOrGeneProduct denotes TP53
T10 41-46 GeneOrGeneProduct denotes Brca1
T11 54-59 GeneOrGeneProduct denotes Brca2
T12 66-76 GeneOrGeneProduct denotes suppressor
T13 77-85 GeneOrGeneProduct denotes proteins
T14 142-147 GeneOrGeneProduct denotes large
T15 160-164 GeneOrGeneProduct denotes OSCs
T16 187-196 GeneOrGeneProduct denotes mutations
T17 200-205 GeneOrGeneProduct denotes other
T18 229-239 GeneOrGeneProduct denotes suppressor

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T6 13-17 GeneOrGeneProduct denotes TP53
T7 41-46 GeneOrGeneProduct denotes Brca1
T8 54-59 GeneOrGeneProduct denotes Brca2
T9 66-76 GeneOrGeneProduct denotes suppressor
T10 142-147 GeneOrGeneProduct denotes large
T11 200-205 GeneOrGeneProduct denotes other
T12 229-239 GeneOrGeneProduct denotes suppressor

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T4 60-65 DiseaseOrPhenotypicFeature denotes tumor D009369
T5 223-228 DiseaseOrPhenotypicFeature denotes tumor D009369

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T5 13-17 GeneOrGeneProduct denotes TP53
T6 54-59 GeneOrGeneProduct denotes Brca2
T7 66-85 GeneOrGeneProduct denotes suppressor proteins
T8 229-239 GeneOrGeneProduct denotes suppressor

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T6 60-65 DiseaseOrPhenotypicFeature denotes tumor 0005070
T7 223-228 DiseaseOrPhenotypicFeature denotes tumor 0005070

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T5 60-65 DiseaseOrPhenotypicFeature denotes tumor D009369
T6 160-164 DiseaseOrPhenotypicFeature denotes OSCs DISEASE
T7 223-228 DiseaseOrPhenotypicFeature denotes tumor D009369

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T5 60-65 DiseaseOrPhenotypicFeature denotes tumor D009369
T6 160-164 DiseaseOrPhenotypicFeature denotes OSCs DISEASE
T7 223-228 DiseaseOrPhenotypicFeature denotes tumor D009369

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label
T8 229-239 GeneOrGeneProduct denotes suppressor
T7 66-85 GeneOrGeneProduct denotes suppressor proteins
T6 54-59 GeneOrGeneProduct denotes Brca2
T5 13-17 GeneOrGeneProduct denotes TP53
T58509 223-228 DiseaseOrPhenotypicFeature denotes tumor D009369
T32450 160-164 DiseaseOrPhenotypicFeature denotes OSCs DISEASE
T39735 60-65 DiseaseOrPhenotypicFeature denotes tumor D009369

PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T6 60-65 DiseaseOrPhenotypicFeature denotes tumor 0005070
T7 223-228 DiseaseOrPhenotypicFeature denotes tumor 0005070

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
19048115-2#13#17#gene7157 13-17 gene7157 denotes TP53
19048115-2#41#46#gene672 41-46 gene672 denotes Brca1
19048115-2#22#33#diseaseC3887505 22-33 diseaseC3887505 denotes dysfunction
19048115-2#160#163#diseaseC1335177 160-163 diseaseC1335177 denotes OSC
19048115-2#22#33#diseaseC3887505 22-33 diseaseC3887505 denotes dysfunction
19048115-2#160#163#diseaseC1335177 160-163 diseaseC1335177 denotes OSC
13#17#gene715722#33#diseaseC3887505 19048115-2#13#17#gene7157 19048115-2#22#33#diseaseC3887505 associated_with TP53,dysfunction
13#17#gene7157160#163#diseaseC1335177 19048115-2#13#17#gene7157 19048115-2#160#163#diseaseC1335177 associated_with TP53,OSC
13#17#gene715722#33#diseaseC3887505 19048115-2#13#17#gene7157 19048115-2#22#33#diseaseC3887505 associated_with TP53,dysfunction
13#17#gene7157160#163#diseaseC1335177 19048115-2#13#17#gene7157 19048115-2#160#163#diseaseC1335177 associated_with TP53,OSC
41#46#gene67222#33#diseaseC3887505 19048115-2#41#46#gene672 19048115-2#22#33#diseaseC3887505 associated_with Brca1,dysfunction
41#46#gene672160#163#diseaseC1335177 19048115-2#41#46#gene672 19048115-2#160#163#diseaseC1335177 associated_with Brca1,OSC
41#46#gene67222#33#diseaseC3887505 19048115-2#41#46#gene672 19048115-2#22#33#diseaseC3887505 associated_with Brca1,dysfunction
41#46#gene672160#163#diseaseC1335177 19048115-2#41#46#gene672 19048115-2#160#163#diseaseC1335177 associated_with Brca1,OSC