PubMed:11139406 / 1050-1538 JSONTXT

Annnotations TAB JSON ListView MergeView

    Oryza-OGER

    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mRNA species and the C-terminus of the plant small uORFs is conserved with the C-terminus of nematode AdoMetDC uORFs; such a conserved arrangement is strongly suggestive of a translational regulatory mechanism. No introns were found in the main AdoMetDC proenzyme ORF from any of the plant genes encoding AdoMetDC, whereas introns were found in conserved positions flanking the overlapping uORFs. The absence of the furthest 3' intron from the Arabidopsis gene encoding AdoMetDC2"}

    OryzaGP_2021

    {"project":"OryzaGP_2021","denotations":[{"id":"T9","span":{"begin":0,"end":8},"obj":"http://identifiers.org/oryzabase.gene/8209"},{"id":"T10","span":{"begin":54,"end":59},"obj":"http://identifiers.org/oryzabase.gene/11165"},{"id":"T11","span":{"begin":111,"end":119},"obj":"http://identifiers.org/oryzabase.gene/8209"},{"id":"T12","span":{"begin":254,"end":262},"obj":"http://identifiers.org/oryzabase.gene/8209"},{"id":"T13","span":{"begin":314,"end":322},"obj":"http://identifiers.org/oryzabase.gene/8209"},{"id":"T14","span":{"begin":479,"end":488},"obj":"http://identifiers.org/oryzabase.gene/13861"},{"id":"T21324","span":{"begin":0,"end":8},"obj":"http://identifiers.org/ricegap/LOC_Os04g42095"},{"id":"T12464","span":{"begin":0,"end":8},"obj":"http://identifiers.org/ricegap/LOC_Os04g42090"},{"id":"T41743","span":{"begin":54,"end":59},"obj":"http://identifiers.org/ricegap/LOC_Os02g34850"},{"id":"T29514","span":{"begin":111,"end":119},"obj":"http://identifiers.org/ricegap/LOC_Os04g42095"},{"id":"T50391","span":{"begin":111,"end":119},"obj":"http://identifiers.org/ricegap/LOC_Os04g42090"},{"id":"T68660","span":{"begin":254,"end":262},"obj":"http://identifiers.org/ricegap/LOC_Os04g42095"},{"id":"T21344","span":{"begin":254,"end":262},"obj":"http://identifiers.org/ricegap/LOC_Os04g42090"},{"id":"T19","span":{"begin":314,"end":322},"obj":"http://identifiers.org/ricegap/LOC_Os04g42095"},{"id":"T20","span":{"begin":314,"end":322},"obj":"http://identifiers.org/ricegap/LOC_Os04g42090"},{"id":"T21","span":{"begin":479,"end":488},"obj":"http://identifiers.org/ricegap/LOC_Os02g39795"},{"id":"T22","span":{"begin":479,"end":488},"obj":"http://identifiers.org/ricegap/LOC_Os02g39790"},{"id":"T8954","span":{"begin":0,"end":8},"obj":"http://identifiers.org/rapdb.locus/Os04g0498600"},{"id":"T2055","span":{"begin":54,"end":59},"obj":"http://identifiers.org/rapdb.locus/Os02g0554000"},{"id":"T33743","span":{"begin":111,"end":119},"obj":"http://identifiers.org/rapdb.locus/Os04g0498600"},{"id":"T42366","span":{"begin":254,"end":262},"obj":"http://identifiers.org/rapdb.locus/Os04g0498600"},{"id":"T76437","span":{"begin":314,"end":322},"obj":"http://identifiers.org/rapdb.locus/Os04g0498600"},{"id":"T40150","span":{"begin":479,"end":488},"obj":"http://identifiers.org/rapdb.locus/Os02g0611200"},{"id":"T377","span":{"begin":0,"end":8},"obj":"http://identifiers.org/uniprot/Q0JC10"},{"id":"T14210","span":{"begin":0,"end":8},"obj":"http://identifiers.org/uniprot/B7ED49"},{"id":"T78143","span":{"begin":0,"end":8},"obj":"http://identifiers.org/uniprot/A2XV58"},{"id":"T1769","span":{"begin":111,"end":119},"obj":"http://identifiers.org/uniprot/Q0JC10"},{"id":"T44687","span":{"begin":111,"end":119},"obj":"http://identifiers.org/uniprot/B7ED49"},{"id":"T19910","span":{"begin":111,"end":119},"obj":"http://identifiers.org/uniprot/A2XV58"},{"id":"T27068","span":{"begin":254,"end":262},"obj":"http://identifiers.org/uniprot/Q0JC10"},{"id":"T11435","span":{"begin":254,"end":262},"obj":"http://identifiers.org/uniprot/B7ED49"},{"id":"T30813","span":{"begin":254,"end":262},"obj":"http://identifiers.org/uniprot/A2XV58"},{"id":"T57283","span":{"begin":314,"end":322},"obj":"http://identifiers.org/uniprot/Q0JC10"},{"id":"T12939","span":{"begin":314,"end":322},"obj":"http://identifiers.org/uniprot/B7ED49"},{"id":"T5254","span":{"begin":314,"end":322},"obj":"http://identifiers.org/uniprot/A2XV58"},{"id":"T90113","span":{"begin":479,"end":488},"obj":"http://identifiers.org/uniprot/Q9SC67"},{"id":"T83762","span":{"begin":479,"end":488},"obj":"http://identifiers.org/uniprot/Q6K9B8"},{"id":"M_8","span":{"begin":254,"end":276},"obj":"hunflair:NA:Gene"},{"id":"M_9","span":{"begin":479,"end":488},"obj":"hunflair:NA:Gene"},{"id":"M_13","span":{"begin":48,"end":53},"obj":"hunflair:NA:Species"},{"id":"M_14","span":{"begin":293,"end":298},"obj":"hunflair:NA:Species"},{"id":"M_29","span":{"begin":0,"end":8},"obj":"hunflair:NA:Gene"},{"id":"M_30","span":{"begin":111,"end":119},"obj":"hunflair:NA:Gene"},{"id":"M_31","span":{"begin":254,"end":262},"obj":"hunflair:NA:Gene"},{"id":"M_32","span":{"begin":314,"end":322},"obj":"hunflair:NA:Gene"},{"id":"M_38","span":{"begin":453,"end":464},"obj":"hunflair:NA:Species"}],"text":"AdoMetDC mRNA species and the C-terminus of the plant small uORFs is conserved with the C-terminus of nematode AdoMetDC uORFs; such a conserved arrangement is strongly suggestive of a translational regulatory mechanism. No introns were found in the main AdoMetDC proenzyme ORF from any of the plant genes encoding AdoMetDC, whereas introns were found in conserved positions flanking the overlapping uORFs. The absence of the furthest 3' intron from the Arabidopsis gene encoding AdoMetDC2"}

    PMID_GLOBAL

    {"project":"PMID_GLOBAL","denotations":[{"id":"T8","span":{"begin":220,"end":405},"obj":"Sentence"}],"text":"AdoMetDC mRNA species and the C-terminus of the plant small uORFs is conserved with the C-terminus of nematode AdoMetDC uORFs; such a conserved arrangement is strongly suggestive of a translational regulatory mechanism. No introns were found in the main AdoMetDC proenzyme ORF from any of the plant genes encoding AdoMetDC, whereas introns were found in conserved positions flanking the overlapping uORFs. The absence of the furthest 3' intron from the Arabidopsis gene encoding AdoMetDC2"}

    OryzaGP_2021_v2

    {"project":"OryzaGP_2021_v2","denotations":[{"id":"T4","span":{"begin":0,"end":8},"obj":"http://identifiers.org/oryzabase.gene/8209"},{"id":"T5","span":{"begin":111,"end":119},"obj":"http://identifiers.org/oryzabase.gene/8209"},{"id":"T6","span":{"begin":254,"end":262},"obj":"http://identifiers.org/oryzabase.gene/8209"},{"id":"T7","span":{"begin":314,"end":322},"obj":"http://identifiers.org/oryzabase.gene/8209"},{"id":"T8","span":{"begin":479,"end":488},"obj":"http://identifiers.org/oryzabase.gene/13861"},{"id":"T60460","span":{"begin":0,"end":8},"obj":"http://identifiers.org/rapdb.locus/Os04g0498600"},{"id":"T52820","span":{"begin":111,"end":119},"obj":"http://identifiers.org/rapdb.locus/Os04g0498600"},{"id":"T91628","span":{"begin":254,"end":262},"obj":"http://identifiers.org/rapdb.locus/Os04g0498600"},{"id":"T57990","span":{"begin":314,"end":322},"obj":"http://identifiers.org/rapdb.locus/Os04g0498600"},{"id":"T30614","span":{"begin":479,"end":488},"obj":"http://identifiers.org/rapdb.locus/Os02g0611200"}],"text":"AdoMetDC mRNA species and the C-terminus of the plant small uORFs is conserved with the C-terminus of nematode AdoMetDC uORFs; such a conserved arrangement is strongly suggestive of a translational regulatory mechanism. No introns were found in the main AdoMetDC proenzyme ORF from any of the plant genes encoding AdoMetDC, whereas introns were found in conserved positions flanking the overlapping uORFs. The absence of the furthest 3' intron from the Arabidopsis gene encoding AdoMetDC2"}

    OryzaGP_2021_FLAIR

    {"project":"OryzaGP_2021_FLAIR","denotations":[{"id":"M_8","span":{"begin":254,"end":276},"obj":"hunflair:NA:Gene"},{"id":"M_9","span":{"begin":479,"end":488},"obj":"hunflair:NA:Gene"},{"id":"M_13","span":{"begin":48,"end":53},"obj":"hunflair:NA:Species"},{"id":"M_14","span":{"begin":293,"end":298},"obj":"hunflair:NA:Species"},{"id":"M_29","span":{"begin":0,"end":8},"obj":"hunflair:NA:Gene"},{"id":"M_30","span":{"begin":111,"end":119},"obj":"hunflair:NA:Gene"},{"id":"M_31","span":{"begin":254,"end":262},"obj":"hunflair:NA:Gene"},{"id":"M_32","span":{"begin":314,"end":322},"obj":"hunflair:NA:Gene"},{"id":"M_38","span":{"begin":453,"end":464},"obj":"hunflair:NA:Species"}],"text":"AdoMetDC mRNA species and the C-terminus of the plant small uORFs is conserved with the C-terminus of nematode AdoMetDC uORFs; such a conserved arrangement is strongly suggestive of a translational regulatory mechanism. No introns were found in the main AdoMetDC proenzyme ORF from any of the plant genes encoding AdoMetDC, whereas introns were found in conserved positions flanking the overlapping uORFs. The absence of the furthest 3' intron from the Arabidopsis gene encoding AdoMetDC2"}

    OryzaGP

    {"project":"OryzaGP","denotations":[{"id":"T5","span":{"begin":254,"end":262},"obj":"gene"},{"id":"T6","span":{"begin":479,"end":488},"obj":"gene"}],"text":"AdoMetDC mRNA species and the C-terminus of the plant small uORFs is conserved with the C-terminus of nematode AdoMetDC uORFs; such a conserved arrangement is strongly suggestive of a translational regulatory mechanism. No introns were found in the main AdoMetDC proenzyme ORF from any of the plant genes encoding AdoMetDC, whereas introns were found in conserved positions flanking the overlapping uORFs. The absence of the furthest 3' intron from the Arabidopsis gene encoding AdoMetDC2"}