PubMed:11133985 / 1349-1606 JSONTXT

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Oryza-OGER

Id Subject Object Predicate Lexical cue
T196 16-24 http://purl.obolibrary.org/obo/SO_0000167 denotes promoter
T197 25-28 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T198 25-28 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T199 25-28 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T200 25-28 http://id.nlm.nih.gov/mesh/D014923 denotes was
T201 60-64 http://purl.obolibrary.org/obo/PR_000022207 denotes beta
T202 60-64 http://purl.obolibrary.org/obo/PR_P17444 denotes beta
T203 60-64 http://purl.obolibrary.org/obo/CHEBI_30225 denotes beta
T204 60-64 http://purl.obolibrary.org/obo/CHEBI_10545 denotes beta
T205 60-64 http://web.expasy.org/cellosaurus/CVCL_R799 denotes beta
T206 60-64 http://purl.obolibrary.org/obo/PR_Q2FV11 denotes beta
T207 60-78 http://www.uniprot.org/uniprot/P08236 denotes beta-glucuronidase
T208 60-78 http://www.uniprot.org/uniprot/O18835 denotes beta-glucuronidase
T209 60-78 http://www.uniprot.org/uniprot/O77695 denotes beta-glucuronidase
T210 60-78 http://www.uniprot.org/uniprot/T2KN75 denotes beta-glucuronidase
T211 60-78 http://www.uniprot.org/uniprot/P12265 denotes beta-glucuronidase
T212 60-78 http://www.uniprot.org/uniprot/Q4FAT7 denotes beta-glucuronidase
T213 60-78 http://www.uniprot.org/uniprot/P05804 denotes beta-glucuronidase
T214 60-78 http://www.uniprot.org/uniprot/O97524 denotes beta-glucuronidase
T215 60-78 http://www.uniprot.org/uniprot/Q7SFB0 denotes beta-glucuronidase
T216 60-78 http://www.uniprot.org/uniprot/P06760 denotes beta-glucuronidase
T217 60-78 http://id.nlm.nih.gov/mesh/D005966 denotes beta-glucuronidase
T218 60-78 http://purl.obolibrary.org/obo/PR_000008358 denotes beta-glucuronidase
T219 60-78 http://www.uniprot.org/uniprot/Q5R5N6 denotes beta-glucuronidase
T220 60-78 http://www.uniprot.org/uniprot/A2QEQ6 denotes beta-glucuronidase
T221 65-78 http://id.nlm.nih.gov/mesh/D005966 denotes glucuronidase
T222 88-92 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T223 93-96 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T224 93-96 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T225 110-114 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T226 115-118 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T227 115-118 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T228 115-118 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T229 115-118 http://id.nlm.nih.gov/mesh/D014923 denotes was
T230 135-139 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T231 135-139 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T232 135-139 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T233 145-149 http://purl.obolibrary.org/obo/PR_000022207 denotes beta
T234 145-149 http://purl.obolibrary.org/obo/PR_P17444 denotes beta
T235 145-149 http://purl.obolibrary.org/obo/CHEBI_30225 denotes beta
T236 145-149 http://purl.obolibrary.org/obo/CHEBI_10545 denotes beta
T237 145-149 http://web.expasy.org/cellosaurus/CVCL_R799 denotes beta
T238 145-149 http://purl.obolibrary.org/obo/PR_Q2FV11 denotes beta
T239 145-163 http://www.uniprot.org/uniprot/P08236 denotes beta-glucuronidase
T240 145-163 http://www.uniprot.org/uniprot/O18835 denotes beta-glucuronidase
T241 145-163 http://www.uniprot.org/uniprot/O77695 denotes beta-glucuronidase
T242 145-163 http://www.uniprot.org/uniprot/T2KN75 denotes beta-glucuronidase
T243 145-163 http://www.uniprot.org/uniprot/P12265 denotes beta-glucuronidase
T244 145-163 http://www.uniprot.org/uniprot/Q4FAT7 denotes beta-glucuronidase
T245 145-163 http://www.uniprot.org/uniprot/P05804 denotes beta-glucuronidase
T246 145-163 http://www.uniprot.org/uniprot/O97524 denotes beta-glucuronidase
T247 145-163 http://www.uniprot.org/uniprot/Q7SFB0 denotes beta-glucuronidase
T248 145-163 http://www.uniprot.org/uniprot/P06760 denotes beta-glucuronidase
T249 145-163 http://id.nlm.nih.gov/mesh/D005966 denotes beta-glucuronidase
T250 145-163 http://purl.obolibrary.org/obo/PR_000008358 denotes beta-glucuronidase
T251 145-163 http://www.uniprot.org/uniprot/Q5R5N6 denotes beta-glucuronidase
T252 145-163 http://www.uniprot.org/uniprot/A2QEQ6 denotes beta-glucuronidase
T253 150-163 http://id.nlm.nih.gov/mesh/D005966 denotes glucuronidase
T254 164-168 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T255 198-206 http://id.nlm.nih.gov/mesh/C000624173 denotes aleurone
T256 207-210 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T257 207-210 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T258 223-228 http://purl.obolibrary.org/obo/UBERON_0022303 denotes layer
T259 223-228 http://purl.obolibrary.org/obo/UBERON_0000119 denotes layer

pqqtest_sentence

Id Subject Object Predicate Lexical cue
T9916 236-256 xzyao:27494 denotes developing endosperm
T2468 211-228 xzyao:34119 denotes subaleurone layer
M_23 247-256 PO:0009089, funRiceGene:253 denotes endosperm
M_42 9-15 hunflair:NA:Gene denotes RISBZ1
M_48 60-78 hunflair:NA:Gene denotes beta-glucuronidase
M_49 145-163 hunflair:NA:Gene denotes beta-glucuronidase
M_53 135-139 hunflair:NA:Species denotes rice
M_63 135-139 pubtator:4530:Species denotes rice

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_16 9-15 hunflair:NA:Gene denotes RISBZ1
M_21 135-139 hunflair:NA:Species denotes rice
M_22 60-78 hunflair:NA:Gene denotes beta-glucuronidase
M_23 145-163 hunflair:NA:Gene denotes beta-glucuronidase
M_45 135-139 pubtator:4530:Species denotes rice

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T6 9-15 http://identifiers.org/oryzabase.gene/7467 denotes RISBZ1
T87069 9-15 http://identifiers.org/ricegap/LOC_Os07g08420 denotes RISBZ1
T10758 9-15 http://identifiers.org/rapdb.locus/Os07g0182000 denotes RISBZ1
T66961 9-15 http://identifiers.org/uniprot/Q9AR01 denotes RISBZ1
M_0 60-78 hunflair:NA:Gene denotes beta-glucuronidase
M_1 145-163 hunflair:NA:Gene denotes beta-glucuronidase
M_12 135-139 hunflair:NA:Species denotes rice
M_18 9-15 hunflair:NA:Gene denotes RISBZ1

sentences

Id Subject Object Predicate Lexical cue
T10 0-257 Sentence denotes When the RISBZ1 promoter was transcriptionally fused to the beta-glucuronidase reporter gene and the chimeric gene was introduced into rice, the beta-glucuronidase gene is specifically expressed in aleurone and subaleurone layer of the developing endosperm.

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T3 247-256 http://purl.obolibrary.org/obo/MAT_0000227 denotes endosperm

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T6 9-15 http://identifiers.org/oryzabase.gene/7467 denotes RISBZ1
T51281 9-15 http://identifiers.org/rapdb.locus/Os07g0182000 denotes RISBZ1

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 60-78 hunflair:NA:Gene denotes beta-glucuronidase
M_1 145-163 hunflair:NA:Gene denotes beta-glucuronidase
M_12 135-139 hunflair:NA:Species denotes rice
M_18 9-15 hunflair:NA:Gene denotes RISBZ1

OryzaGP

Id Subject Object Predicate Lexical cue
T4 9-15 gene denotes RISBZ1

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T4 135-139 OrganismTaxon denotes rice 4530

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 223-228 Body_part denotes layer http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T3 247-256 Body_part denotes endosperm http://purl.obolibrary.org/obo/MAT_0000227