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PMC:7589163 / 78209-80956 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T346 350-355 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T347 424-437 Body_part denotes bronchiolitis http://purl.org/sig/ont/fma/fma76497
T348 516-521 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T349 535-543 Body_part denotes neonates http://purl.org/sig/ont/fma/fma292381
T350 625-648 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T351 820-825 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T352 875-897 Body_part denotes lowerrespiratory tract http://purl.org/sig/ont/fma/fma45662
T353 1076-1081 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T354 1349-1354 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T355 1397-1420 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T356 1642-1647 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T357 1654-1659 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T358 1927-1932 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T359 1946-1951 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T360 2000-2023 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T361 2222-2227 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T362 2280-2284 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T363 2441-2445 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T364 2513-2518 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T365 2541-2549 Body_part denotes Neonatal http://purl.org/sig/ont/fma/fma292381
T366 2653-2661 Body_part denotes neonates http://purl.org/sig/ont/fma/fma292381

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T146 350-355 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T147 516-521 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T148 625-648 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T149 631-648 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T150 820-825 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T151 875-897 Body_part denotes lowerrespiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T152 1076-1081 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T153 1349-1354 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T154 1397-1420 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T155 1403-1420 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T156 1642-1647 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T157 1654-1659 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T158 1927-1932 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T159 1946-1951 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T160 2000-2023 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T161 2006-2023 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T162 2222-2227 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T163 2280-2284 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T164 2441-2445 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T165 2513-2518 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T340 128-149 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T341 140-149 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T342 424-437 Disease denotes bronchiolitis http://purl.obolibrary.org/obo/MONDO_0002465
T343 562-572 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T344 631-659 Disease denotes respiratory tract infections http://purl.obolibrary.org/obo/MONDO_0024355
T345 675-681 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T346 898-907 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T347 1182-1203 Disease denotes respiratory disorders http://purl.obolibrary.org/obo/MONDO_0005087
T348 1403-1434 Disease denotes respiratory tract infections in http://purl.obolibrary.org/obo/MONDO_0024355
T349 1698-1719 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T350 1710-1719 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T351 2006-2037 Disease denotes respiratory tract infections in http://purl.obolibrary.org/obo/MONDO_0024355
T352 2320-2341 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T353 2332-2341 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T354 2667-2676 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T355 2728-2737 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T707 200-206 http://purl.obolibrary.org/obo/NCBITaxon_9005 denotes Turkey
T708 350-355 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T709 350-355 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T710 418-423 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T711 424-437 http://purl.obolibrary.org/obo/UBERON_0002186 denotes bronchiolitis
T712 516-521 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T713 516-521 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T714 625-648 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T715 820-825 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T716 820-825 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T717 875-897 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lowerrespiratory tract
T718 949-952 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T719 1076-1081 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T720 1076-1081 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T721 1298-1300 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T722 1349-1354 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T723 1349-1354 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T724 1397-1420 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T725 1642-1647 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T726 1642-1647 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T727 1654-1659 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T728 1654-1659 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T729 1927-1932 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T730 1927-1932 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T731 1946-1951 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T732 1946-1951 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T733 2000-2023 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T734 2075-2081 http://purl.obolibrary.org/obo/NCBITaxon_9005 denotes Turkey
T735 2280-2284 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T736 2280-2284 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T737 2441-2445 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T738 2441-2445 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T739 2513-2518 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T740 2513-2518 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T77439 78-87 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T455 78-85 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T72122 289-298 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T22196 289-296 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T34281 356-365 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T459 356-363 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T50652 522-531 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T18020 522-529 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T11593 583-592 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T59745 583-590 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T24653 804-813 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T68497 804-811 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T26561 1082-1091 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T91987 1082-1089 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T36700 1322-1331 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T469 1322-1329 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T95968 1613-1622 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T13360 1613-1620 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T48825 1660-1669 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T10354 1660-1667 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T64675 1891-1900 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T4583 1891-1898 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T84606 1968-1977 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T7497 1968-1975 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T3995 2156-2165 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T71480 2156-2163 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T19527 2181-2186 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T63825 2477-2486 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T27723 2477-2484 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T17404 2521-2530 Chemical denotes Vitamin D http://purl.obolibrary.org/obo/CHEBI_89324
T66082 2521-2528 Chemical denotes Vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T57364 2715-2724 Chemical denotes vitamin D http://purl.obolibrary.org/obo/CHEBI_27300
T63214 2715-2722 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T201 78-98 Phenotype denotes vitamin D deficiency http://purl.obolibrary.org/obo/HP_0100512
T202 128-149 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T203 356-376 Phenotype denotes vitamin D deficiency http://purl.obolibrary.org/obo/HP_0100512
T204 424-437 Phenotype denotes bronchiolitis http://purl.obolibrary.org/obo/HP_0011950
T205 625-659 Phenotype denotes lower respiratory tract infections http://purl.obolibrary.org/obo/HP_0002783
T206 661-669 Phenotype denotes wheezing http://purl.obolibrary.org/obo/HP_0030828
T207 675-681 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099
T208 875-907 Phenotype denotes lowerrespiratory tract infection http://purl.obolibrary.org/obo/HP_0002783
T209 1397-1431 Phenotype denotes lower respiratory tract infections http://purl.obolibrary.org/obo/HP_0002783
T210 1613-1633 Phenotype denotes vitamin D deficiency http://purl.obolibrary.org/obo/HP_0100512
T211 1698-1719 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T212 1968-1988 Phenotype denotes vitamin D deficiency http://purl.obolibrary.org/obo/HP_0100512
T213 2000-2034 Phenotype denotes lower respiratory tract infections http://purl.obolibrary.org/obo/HP_0002783
T214 2320-2341 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T215 2550-2570 Phenotype denotes Pulmonary Infections http://purl.obolibrary.org/obo/HP_0006532
T216 2667-2676 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T217 2728-2737 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T501 0-50 Sentence denotes Study Authors Country Study Population Results
T502 51-168 Sentence denotes Association of subclinical vitamin D deficiency in newborns with acute lower respiratory infection and their mothers.
T503 170-344 Sentence denotes Karatekin et al., 2009 [145] Turkey 25 newborns with LRTI admitted to NICU vs. healthy controls Significantly lower vitamin D levels in affected newborns than in controls.
T504 345-438 Sentence denotes Cord blood vitamin D deficiency is associated with respiratory syncytial virus bronchiolitis.
T505 440-573 Sentence denotes Belderbos et al., 2011 [146] Netherlands 156 healthy newborns Lower cord blood vitamin D in neonates who developed RSV infections.
T506 574-695 Sentence denotes Maternal vitamin D status in pregnancy and risk of lower respiratory tract infections, wheezing, and asthma in offspring.
T507 697-814 Sentence denotes Morales et al., 2012 [147] Spain 1724 pregnant women Decreased LRTI in offspring of mothers with higher vitamin D.
T508 815-927 Sentence denotes Cord blood 25-hydroxyvitamin D levels and the risk of acute lowerrespiratory tract infection in early childhood.
T509 929-1092 Sentence denotes Mohameet al., 2013 [148] Egypt 206 healthy newborns Increased risk of developing ALRIs in the first 2 years of life in newborns with lower cord blood vitamin D.
T510 1093-1204 Sentence denotes Prospective study of maternal mid-pregnancy 25-hydroxyvitamin D level and earlychildhood respiratory disorders.
T511 1206-1343 Sentence denotes Magnus et al., 2013 [149] Norway Pregnant women Reduced risk of LRTI in offspring by age 36 months when maternal vitamin D was higher.
T512 1344-1473 Sentence denotes Cord blood 25(OH)D levels and the subsequent risk of lower respiratory tract infections in early childhood: the Ulm birth cohort.
T513 1475-1648 Sentence denotes Luczynska et al., 2014 [150] Germany 777 healthy newborns Increased risk of developing LRTIs in the first year of life in infants with vitamin D deficiency in cord blood.
T514 1649-1768 Sentence denotes Cord blood vitamin D and the risk of acute lower respiratory infection in Indigenous infants in the Northern Territory.
T515 1770-1952 Sentence denotes Binks et al., 2016[151] Australia 109 mother-infant pairs Higher risk of hospitalization for ALRI in pairs with lower vitamin D levels in pregnancy, cord blood and infants’ blood.
T516 1953-2047 Sentence denotes Association of vitamin D deficiency with acute lower respiratory tract infections in newborns.
T517 2049-2212 Sentence denotes Dinlen et al., 2016[152] Turkey 30 newborns with ALRI and their mothers vs. healthy control pairs Lower vitamin D levels in ALRI group than in healthy controls.
T518 2213-2353 Sentence denotes Low cord-serum 25-hydroxyvitamin D levels are associated with poor lung function performance and increased respiratory infection in infancy.
T519 2355-2520 Sentence denotes Lai et al., 2017[153] Taiwan 122 mother-infant pairs Higher risk of RTI and poorer lung function in infants with lower vitamin D levels (maternal and cord blood).
T520 2521-2571 Sentence denotes Vitamin D Status in Neonatal Pulmonary Infections:
T521 2572-2612 Sentence denotes Relationship to Inflammatory Indicators.
T522 2614-2747 Sentence denotes El-Kassas et al., 2019[154] Egypt 33 neonates with pneumonia vs. healthy controls Lower levels of vitamin D in pneumonia patients.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3234 200-206 Species denotes Turkey Tax:9103
3235 746-751 Species denotes women Tax:9606
3236 1250-1255 Species denotes women Tax:9606
3237 1600-1607 Species denotes infants Tax:9606
3238 1734-1741 Species denotes infants Tax:9606
3239 1937-1944 Species denotes infants Tax:9606
3240 2075-2081 Species denotes Turkey Tax:9103
3241 2458-2465 Species denotes infants Tax:9606
3242 2738-2746 Species denotes patients Tax:9606
3243 78-87 Chemical denotes vitamin D MESH:D014807
3244 289-298 Chemical denotes vitamin D MESH:D014807
3245 356-365 Chemical denotes vitamin D MESH:D014807
3246 522-531 Chemical denotes vitamin D MESH:D014807
3247 583-592 Chemical denotes vitamin D MESH:D014807
3248 804-813 Chemical denotes vitamin D MESH:D014807
3249 826-845 Chemical denotes 25-hydroxyvitamin D MESH:C104450
3250 1082-1091 Chemical denotes vitamin D MESH:D014807
3251 1137-1156 Chemical denotes 25-hydroxyvitamin D MESH:C104450
3252 1322-1331 Chemical denotes vitamin D MESH:D014807
3253 1355-1362 Chemical denotes 25(OH)D
3254 1613-1622 Chemical denotes vitamin D MESH:D014807
3255 1660-1669 Chemical denotes vitamin D MESH:D014807
3256 1891-1900 Chemical denotes vitamin D MESH:D014807
3257 1968-1977 Chemical denotes vitamin D MESH:D014807
3258 2156-2165 Chemical denotes vitamin D MESH:D014807
3259 2228-2247 Chemical denotes 25-hydroxyvitamin D MESH:C104450
3260 2477-2486 Chemical denotes vitamin D MESH:D014807
3261 2521-2530 Chemical denotes Vitamin D MESH:D014807
3262 2715-2724 Chemical denotes vitamin D MESH:D014807
3263 128-149 Disease denotes respiratory infection MESH:D012141
3264 396-437 Disease denotes respiratory syncytial virus bronchiolitis
3265 562-572 Disease denotes infections MESH:D007239
3266 631-659 Disease denotes respiratory tract infections MESH:D012141
3267 675-681 Disease denotes asthma MESH:D001249
3268 898-907 Disease denotes infection MESH:D007239
3269 1182-1203 Disease denotes respiratory disorders MESH:D012131
3270 1403-1431 Disease denotes respiratory tract infections MESH:D012141
3271 1623-1647 Disease denotes deficiency in cord blood MESH:D007022
3272 1698-1719 Disease denotes respiratory infection MESH:D012141
3273 1994-2034 Disease denotes acute lower respiratory tract infections MESH:D012141
3274 2320-2341 Disease denotes respiratory infection MESH:D012141
3275 2541-2570 Disease denotes Neonatal Pulmonary Infections MESH:D012141
3276 2667-2676 Disease denotes pneumonia MESH:D011014
3277 2728-2737 Disease denotes pneumonia MESH:D011014