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PMC:7574920 / 49317-50777 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T188 98-101 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T189 1388-1392 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T415 516-517 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T416 618-619 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T417 999-1000 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T418 1091-1092 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T419 1388-1392 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T93821 453-458 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T20136 866-874 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893
T63187 890-893 Chemical denotes CO2 http://purl.obolibrary.org/obo/CHEBI_16526

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
336 319-322 Gene denotes Mix Gene:83881
337 582-585 Gene denotes mix Gene:83881
338 402-405 Gene denotes mix Gene:83881
339 453-458 Chemical denotes water MESH:D014867
340 890-893 Chemical denotes CO2 MESH:D002245
341 1287-1292 Chemical denotes metal MESH:D008670

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T287 125-127 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T288 301-303 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T289 906-919 http://purl.obolibrary.org/obo/GO_0045851 denotes acidification

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T357 0-141 Sentence denotes Assays were assembled in total reaction volumes of either 12.5 μl (for LAMP assays using isolated RNA) or 20 μl (for swab–to–RT-LAMP assays).
T358 142-476 Sentence denotes Master mixes were prepared at room temperature for each reaction immediately before use with either 6.25 or 10 μl, respectively, of the WarmStart Colorimetric RT-LAMP 2X Master Mix (M1800, New England Biolabs) and 1.25 or 2 μl, respectively, of the 10× primer mix, filled up to 11.5 or 19 μl with nuclease-free water (AM9937, Ambion).
T359 477-511 Sentence denotes Values given are for one reaction:
T360 512-791 Sentence denotes For a 96-well plate, 100 times larger volumes were used, and the LAMP mix was distributed to the wells of a 96-well plate (4ti-0960/C, Brooks Life Sciences or 0030128672, Eppendorf) before pipetting 1 μl of sample into each well of the plate; for details, see previous paragraph.
T361 792-973 Sentence denotes Plates were prepared immediately before use to limit exposure of the LAMP reagents to atmospheric CO2 (to prevent acidification of the reaction) and kept on an ice-cold metal block.
T362 974-1157 Sentence denotes Plates were sealed using a transparent adhesive foil (GK480-OS, Kisker Biotech), and the reactions were incubated in a PCR cycler at 65°C for 15 to 60 min with the lid heated to 75°C.
T363 1158-1308 Sentence denotes To perform measurements at the indicated time points, the reactions were taken out of the PCR cycler and placed into an ice cold metal block for 30 s.
T364 1309-1359 Sentence denotes This intensifies the color before the measurement.
T365 1360-1460 Sentence denotes Photographs were taken with cell phone cameras or the scanner function of an office copying machine.