PMC:7574920 / 33060-33778
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T127 | 109-113 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T128 | 318-321 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T129 | 359-362 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T130 | 714-717 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T79 | 307-315 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T284 | 3-9 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T285 | 61-63 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T286 | 86-87 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T287 | 109-113 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T288 | 140-141 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T289 | 181-182 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T290 | 552-553 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T291 | 653-654 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T292 | 670-672 | http://purl.obolibrary.org/obo/CLO_0001313 | denotes | 36 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T68 | 701-710 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 238 | 157-162 | Gene | denotes | ORF1a | Gene:43740578 |
| 239 | 107-108 | Gene | denotes | N | Gene:43740575 |
| 240 | 84-85 | Gene | denotes | N | Gene:43740575 |
| 241 | 307-317 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T200 | 14-16 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T201 | 206-208 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T202 | 339-341 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T203 | 463-465 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T204 | 563-565 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T253 | 0-163 | Sentence | denotes | We tested the RT-LAMP primer sets suggested by Zhang et al. (11) and found that the N-A primer set for the N gene worked better than the 1a-A primer set for ORF1a. |
| T254 | 164-432 | Sentence | denotes | For samples with a CT ≤ 30 as measured by RT-qPCR with E-Sarbeco primers, we found overall satisfactory sensitivity and specificity values for SARS-CoV-2 RNA detection by the RT-LAMP assay using RNA samples isolated from pharyngeal swab specimens (Fig. 3 and Table 1). |
| T255 | 433-501 | Sentence | denotes | For samples with CT > 30, the RT-LAMP assay was much less sensitive. |
| T256 | 502-619 | Sentence | denotes | However, there is debate about which CT value for a positive RT-qPCR result should be considered clinically relevant. |
| T257 | 620-718 | Sentence | denotes | Vogels et al. (16) indicate that a CT value above 36 corresponds to less than 10 molecules of RNA. |