Table 2  Summary of LAMP-sequencing results.
The cross tabulation of RT-qPCR and RT-LAMP assay results shown in Table 1 have been split into samples where sequencing of RT-LAMP reaction products (LAMP-sequencing) was positive (Pos), negative (Neg), or inconclusive (too few reads) (see also Fig. 4).
RT-LAMP
CT   Pos   Neg  Sum
LAMP-  sequencing   Pos   RT-qPCR   Pos   0–25  49  0  49
25–30  28  0  28
30–35  4  0  4
35–40  0  0  0
Neg   Neg  0  0  0
Neg   RT-qPCR   Pos   0–25  0  0  0
25–30  0  2  2
30–35  0  16  16
35–40  0  16  16
Neg   Neg  2  637  639
Too few reads   RT-qPCR   Pos   0–25  2  0  2
25–30  0  0  0
30–35  0  0  0
35–40  0  0  0
Neg   Neg  0  12  12
Sum  85  683  768