PMC:7417285 / 902-2238
Annnotations
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 133-137 | Body_part | denotes | tube | http://purl.obolibrary.org/obo/UBERON_0000025 |
| T2 | 836-841 | Body_part | denotes | valve | http://purl.obolibrary.org/obo/UBERON_0003978 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 133-137 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | tube |
| T4 | 147-148 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T5 | 394-401 | http://purl.obolibrary.org/obo/OBI_0100026 | denotes | organic |
| T6 | 394-401 | http://purl.obolibrary.org/obo/UBERON_0000468 | denotes | organic |
| T7 | 725-731 | http://www.ebi.ac.uk/efo/EFO_0000825 | denotes | valves |
| T8 | 836-841 | http://www.ebi.ac.uk/efo/EFO_0000825 | denotes | valve |
| T9 | 899-900 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T10 | 1222-1229 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 172-179 | Chemical | denotes | alcohol | http://purl.obolibrary.org/obo/CHEBI_16236|http://purl.obolibrary.org/obo/CHEBI_30879 |
| T3 | 294-303 | Chemical | denotes | detergent | http://purl.obolibrary.org/obo/CHEBI_27780 |
| T4 | 304-312 | Chemical | denotes | solution | http://purl.obolibrary.org/obo/CHEBI_75958 |
| T5 | 338-347 | Chemical | denotes | detergent | http://purl.obolibrary.org/obo/CHEBI_27780 |
| T6 | 448-457 | Chemical | denotes | detergent | http://purl.obolibrary.org/obo/CHEBI_27780 |
| T7 | 537-542 | Chemical | denotes | water | http://purl.obolibrary.org/obo/CHEBI_15377 |
| T8 | 679-688 | Chemical | denotes | detergent | http://purl.obolibrary.org/obo/CHEBI_27780 |
| T9 | 941-945 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T10 | 947-961 | Chemical | denotes | glutaraldehyde | http://purl.obolibrary.org/obo/CHEBI_64276 |
| T11 | 972-986 | Chemical | denotes | phthalaldehyde | http://purl.obolibrary.org/obo/CHEBI_70851 |
| T12 | 987-995 | Chemical | denotes | solution | http://purl.obolibrary.org/obo/CHEBI_75958 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 221-238 | http://purl.obolibrary.org/obo/GO_0042710 | denotes | biofilm formation |
| T2 | 229-238 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
| T3 | 842-850 | http://purl.obolibrary.org/obo/GO_0015297 | denotes | exchange |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6 | 0-180 | Sentence | denotes | Therefore, during precleaning at the bedside 2 , we recommend first applying virucide to the endoscope control section and insertion tube by using a gauze dampened in 70 % alcohol. |
| T7 | 181-316 | Sentence | denotes | Second, to remove debris and to prevent biofilm formation in the endoscope channel, we recommend using enzymatic detergent solution 3 . |
| T8 | 317-461 | Sentence | denotes | The use of enzymatic detergent is preferred because it reduces the amount of organic residue compared with the use of nonenzymatic detergent 4 . |
| T9 | 462-639 | Sentence | denotes | Notably, we strongly recommend against suction or blowing air, or flushing water into any of the channels as these actions may cause splashing or even aerosolization ( Fig. 1 ). |
| T10 | 640-720 | Sentence | denotes | Thus, we recommend only suctioning the detergent through the working channel 4 . |
| T11 | 721-851 | Sentence | denotes | The valves should not be replaced before finishing this process because significant splashing may occur during the valve exchange. |
| T12 | 852-1056 | Sentence | denotes | Third, we recommend immersing the endoscope in a bin containing 0.2 % – 0.35 % paracetic acid, glutaraldehyde, or ortho-phthalaldehyde solution for the duration recommended by the manufacturer ( Fig. 1 ). |
| T13 | 1057-1087 | Sentence | denotes | These solutions are virucidal. |
| T14 | 1088-1335 | Sentence | denotes | Ultimately, the endoscope can be transferred to the reprocessing room and undergo the standard reprocessing order, starting from leak testing, repeat manual cleaning (this time with flushing, rinsing etc.), and standard high-level disinfection 2 . |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 528-536 | Phenotype | denotes | flushing | http://purl.obolibrary.org/obo/HP_0031284 |
| T2 | 1270-1278 | Phenotype | denotes | flushing | http://purl.obolibrary.org/obo/HP_0031284 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 19 | 172-179 | Chemical | denotes | alcohol | MESH:D000438 |
| 20 | 537-542 | Chemical | denotes | water | MESH:D014867 |
| 21 | 931-945 | Chemical | denotes | paracetic acid | |
| 22 | 947-961 | Chemical | denotes | glutaraldehyde | MESH:D005976 |
| 23 | 966-986 | Chemical | denotes | ortho-phthalaldehyde | MESH:D009764 |
| 24 | 528-536 | Disease | denotes | flushing | MESH:D005483 |
| 25 | 1270-1278 | Disease | denotes | flushing | MESH:D005483 |