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PMC:7402624 / 27173-28450 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T224 46-50 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T225 264-266 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T226 393-397 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T227 474-479 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T228 542-547 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T229 576-580 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T230 754-756 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T231 820-824 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T232 954-958 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T233 986-997 Body_part denotes plasmablast http://purl.org/sig/ont/fma/fma84371
T234 1022-1026 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T235 1083-1085 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T236 1088-1092 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T237 1161-1163 Body_part denotes PB http://purl.org/sig/ont/fma/fma84371
T238 1266-1271 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1005 344-349 Gene denotes CXCR5 Gene:643
1006 446-451 Gene denotes CXCR5 Gene:643
1007 536-539 Gene denotes CD4 Gene:920
1008 745-749 Gene denotes IL-6 Gene:3569
1013 78-86 Species denotes patients Tax:9606
1014 313-321 Species denotes patients Tax:9606
1015 418-426 Species denotes patients Tax:9606
1019 256-260 Chemical denotes KI67
1020 264-266 Chemical denotes PB
1021 666-674 Chemical denotes steroids MESH:D013256
1027 69-77 Disease denotes COVID-19 MESH:C000657245
1028 198-207 Disease denotes infection MESH:D007239
1029 215-226 Disease denotes lymphopenia MESH:D008231
1030 304-312 Disease denotes COVID-19 MESH:C000657245
1031 334-336 Disease denotes HD MESH:D006816
1032 409-417 Disease denotes COVID-19 MESH:C000657245
1033 614-626 Disease denotes co-infection MESH:D060085
1034 847-855 Disease denotes COVID-19 MESH:C000657245
1035 895-907 Disease denotes inflammation MESH:D007249
1038 944-951 Species denotes patient Tax:9606
1039 935-943 Disease denotes COVID-19 MESH:C000657245
1065 1195-1197 Disease denotes HD MESH:D006816

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T206 69-77 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T207 198-207 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T208 215-226 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T209 264-266 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T210 304-312 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T211 334-336 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T212 340-342 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T213 409-417 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T214 617-626 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T215 628-646 Disease denotes immune suppression http://purl.obolibrary.org/obo/MONDO_0007816
T216 754-756 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T217 847-855 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T218 895-907 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T219 935-943 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T220 1083-1085 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T221 1161-1163 Disease denotes PB http://purl.obolibrary.org/obo/MONDO_0019035
T222 1195-1197 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T477 44-50 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T478 126-128 http://purl.obolibrary.org/obo/CLO_0001387 denotes 4C
T479 157-158 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T480 340-342 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T481 391-397 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T482 472-479 http://purl.obolibrary.org/obo/CL_0000236 denotes B cells
T483 530-547 http://purl.obolibrary.org/obo/CL_0000895 denotes naïve CD4 T cells
T484 574-580 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T485 710-711 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T486 818-824 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T487 952-958 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T488 1020-1026 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T489 1041-1042 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T490 1086-1092 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T491 1103-1104 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T492 1195-1202 http://purl.obolibrary.org/obo/CLO_0050940 denotes HD. (C)
T493 1264-1271 http://purl.obolibrary.org/obo/CL_0000236 denotes B cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T176 114-119 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T177 171-178 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T178 264-266 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T180 334-336 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T181 340-342 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812
T182 666-674 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T183 745-747 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T185 754-756 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T187 1083-1085 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T189 1161-1163 Chemical denotes PB http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686
T191 1195-1197 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T65 895-907 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T9 215-226 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T165 131-248 Sentence denotes This observation suggests a role for an antigen-driven response to infection and/or lymphopenia-driven proliferation.
T166 249-343 Sentence denotes Higher KI67 in PB may reflect recent generation in the COVID-19 patients compared to HD or RD.
T167 344-437 Sentence denotes CXCR5 expression was also reduced on all major B cell subsets in COVID-19 patients (Fig. 4D).
T168 438-558 Sentence denotes Loss of CXCR5 was not specific to B cells, however, as expression was also decreased on non-naïve CD4 T cells (Fig. 4E).
T169 559-781 Sentence denotes Changes in the B cell subsets were not associated with co-infection, immune suppression, or treatment with steroids or other clinical features, though a possible negative association of IL-6 and PB was revealed (fig. S5A).
T170 782-908 Sentence denotes These observations suggest that the B cell response phenotype of COVID-19 disease was not simply due to systemic inflammation.
T171 909-1039 Sentence denotes Fig. 4 Deep profiling of COVID-19 patient B cell populations reveals robust plasmablast populations and other B cell alterations.