Table 4 BioProject data analysis for differential gene expression between non-treated and SARS-CoV-2-treated NEHB and A549 cells. WikiPathways p-Adj Photodynamic therapy-induced NF-kB survival signaling 0 IL-18 signaling pathway 8.6 × 10−9 miRNAs involvement in the immune response in sepsis 2.4 × 10−8 Cytokines and Inflammatory Response 9.9 × 10−7 Lung fibrosis 2.5 × 10−6 BioPlanet p-Adj Oncostatin M 0 Interleukin-1 regulation of extracellular matrix 0 Interleukin-5 regulation of apoptosis 0 TNF-alpha effects on cytokine activity, cell motility, and apoptosis 0 Immune system signaling by interferons, interleukins, prolactin, and growth hormones 0 KEGG p-Adj IL-17 signaling pathway 1.3 × 10−9 TNF signaling pathway 1.6 × 10−9 Legionellosis 3.5 × 10−9 Rheumatoid arthritis 5.4 × 10−9 Cytokine-cytokine receptor interaction 6.6 × 10−9 PANTHER p-Adj Plasminogen activating cascade 0.00156 Toll receptor signaling pathway 0.00911 CCKR signaling map ST 0.02550 Apoptosis signaling pathway 0.10282 Blood coagulation 0.10433 REACTOME p-Adj Interferon alpha/beta signaling 1.6 × 10−9 Interleukin-10 signaling 2.5 × 10−9 Interleukin-4 and Interleukin-13 signaling 2.4 × 10−7 Formation of the cornified envelope 1.3 × 10−5 Chemokine receptors bind chemokines 0.00047 Small Molecule Pathway DB p-Adj CD40L Signalling Pathway 0.25268 NF-kB Signaling Pathway 0.25268 Toll-Like Receptor Pathway 2 0.25268 Capecitabine Metabolism Pathway 0.25268 Capecitabine Action Pathway 0.25268 BIOCYC p-Adj vitamin D3 biosynthesis 0.03597 guanosine nucleotides degradation 0.03597 retinoate biosynthesis II 0.03597 guanosine nucleotides degradation III 0.03597 adenosine nucleotides degradation II 0.03597 Pathway Interaction DB p-Adj Validated transcriptional targets of AP1 family members Fra1 and Fra2 3.8 × 10−5 IL23-mediated signaling events 0.00050 CD40/CD40L signaling 0.02539 Glucocorticoid receptor regulatory network 0.02603 LPA receptor mediated events 0.04171