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PMC:7344504 / 6417-7555 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T17 349-354 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T18 433-438 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T12 349-354 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T13 433-438 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
179 0-21 Species denotes Aspergillus fumigatus Tax:746128
180 778-790 Species denotes A. fumigatus Tax:746128
181 148-159 Species denotes Aspergillus Tax:746128
182 264-274 Chemical denotes β-d-glucan
183 439-452 Chemical denotes galactomannan MESH:C012990
184 507-519 Chemical denotes Voriconazole MESH:D065819
185 565-576 Chemical denotes caspofungin MESH:D000077336
186 675-680 Chemical denotes azole MESH:D001393
187 816-830 Chemical denotes amphotericin B MESH:D000666
188 841-851 Chemical denotes micafungin MESH:D000077551
189 856-869 Chemical denotes anidulafungin MESH:D000077612
190 883-895 Chemical denotes itraconazole MESH:D017964
191 904-916 Chemical denotes voriconazole MESH:D065819
192 932-944 Chemical denotes posaconazole MESH:C101425
193 957-969 Chemical denotes Voriconazole MESH:D065819
194 1045-1056 Chemical denotes caspofungin MESH:D000077336
195 112-137 Disease denotes Aspergillus galactomannan MESH:D001228

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T33 418-422 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T34 627-629 Disease denotes BV http://purl.obolibrary.org/obo/MONDO_0005316

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T44 240-241 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 359-363 http://purl.obolibrary.org/obo/CLO_0053133 denotes 1590
T46 364-366 http://purl.obolibrary.org/obo/CLO_0008426 denotes pg
T47 394-395 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 778-779 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T49 829-830 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T42 124-137 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T43 177-179 Chemical denotes La http://purl.obolibrary.org/obo/CHEBI_33336
T44 268-274 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T45 337-339 Chemical denotes MA http://purl.obolibrary.org/obo/CHEBI_474859|http://purl.obolibrary.org/obo/CHEBI_73610|http://purl.obolibrary.org/obo/CHEBI_90325
T48 439-452 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T49 565-576 Chemical denotes caspofungin http://purl.obolibrary.org/obo/CHEBI_474180
T50 675-680 Chemical denotes azole http://purl.obolibrary.org/obo/CHEBI_68452
T51 816-830 Chemical denotes amphotericin B http://purl.obolibrary.org/obo/CHEBI_2682
T52 841-851 Chemical denotes micafungin http://purl.obolibrary.org/obo/CHEBI_600520
T53 856-869 Chemical denotes anidulafungin http://purl.obolibrary.org/obo/CHEBI_55346
T54 883-895 Chemical denotes itraconazole http://purl.obolibrary.org/obo/CHEBI_6076
T55 904-916 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T56 932-944 Chemical denotes posaconazole http://purl.obolibrary.org/obo/CHEBI_64355
T57 1045-1056 Chemical denotes caspofungin http://purl.obolibrary.org/obo/CHEBI_474180

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 124-137 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T2 439-452 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T58 0-111 Sentence denotes Aspergillus fumigatus was recovered from high-volume tracheal aspirate cultures [14] obtained at ICU admission.
T59 112-432 Sentence denotes Aspergillus galactomannan (Platelia Aspergillus; Bio-Rad, Marnes-La-Coquette, France) ratio at this time was >3.0 (positive) in a tracheal aspirate and β-d-glucan (Fungitell assay; Associates of Cape Cod Inc., East Falmouth, MA, USA) in serum was 1590 pg/mL (positive), after which a putative diagnosis of CAPA was made.
T60 433-506 Sentence denotes Serum galactomannan remained negative (<0.5) in three subsequent samples.
T61 507-524 Sentence denotes Voriconazole i.v.
T62 525-581 Sentence denotes 6 mg/kg q12h was started in addition to caspofungin i.v.
T63 582-706 Sentence denotes 70 mg q24h until the VIPcheck (Mediaproducts BV, Groningen, The Netherlands), used to detect azole resistance, was negative.
T64 707-956 Sentence denotes MICs determined with broth microdilution using CLSI methodology of the A. fumigatus isolate were as follows: amphotericin B 0.5 mg/L, micafungin and anidulafungin <0.016 mg/L, itraconazole 1 mg/L, voriconazole 0.25 mg/L, and posaconazole 0.063 mg/L.
T65 957-1057 Sentence denotes Voriconazole was switched to oral administration of 200 mg q12h with discontinuation of caspofungin.
T66 1058-1138 Sentence denotes During SDD, bacterial cultures remained negative throughout her stay in the ICU.

2_test

Id Subject Object Predicate Lexical cue
32517166-31811917-60114385 81-83 31811917 denotes 14