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PMC:7279430 / 27432-27953 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T79 358-368 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T80 429-439 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1587 82-92 Species denotes SARS-CoV-2 Tax:2697049
1588 40-54 Chemical denotes (E,E)-farnesol
1589 59-72 Chemical denotes (E)-nerolidol
1590 159-173 Chemical denotes (E,E)-farnesol
1591 188-201 Chemical denotes (E)-nerolidol
1592 254-268 Chemical denotes (E,E)-farnesol
1593 270-277 Chemical denotes magenta MESH:D012394
1594 283-296 Chemical denotes (E)-nerolidol
1595 383-397 Chemical denotes (E,E)-farnesol
1596 454-467 Chemical denotes (E)-nerolidol
1597 469-477 Chemical denotes Hydrogen MESH:D006859

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T160 82-90 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T217 121-122 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T218 213-214 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T219 358-377 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residues
T220 358-377 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residues
T221 429-448 http://purl.obolibrary.org/obo/CHEBI_33708 denotes amino acid residues
T222 429-448 http://purl.obolibrary.org/obo/PR_000036907 denotes amino acid residues

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T421 40-54 Chemical denotes (E,E)-farnesol http://purl.obolibrary.org/obo/CHEBI_16619
T422 46-54 Chemical denotes farnesol http://purl.obolibrary.org/obo/CHEBI_28600
T423 63-72 Chemical denotes nerolidol http://purl.obolibrary.org/obo/CHEBI_7524
T424 159-173 Chemical denotes (E,E)-farnesol http://purl.obolibrary.org/obo/CHEBI_16619
T425 165-173 Chemical denotes farnesol http://purl.obolibrary.org/obo/CHEBI_28600
T426 175-182 Chemical denotes magenta http://purl.obolibrary.org/obo/CHEBI_87661
T427 192-201 Chemical denotes nerolidol http://purl.obolibrary.org/obo/CHEBI_7524
T428 254-268 Chemical denotes (E,E)-farnesol http://purl.obolibrary.org/obo/CHEBI_16619
T429 260-268 Chemical denotes farnesol http://purl.obolibrary.org/obo/CHEBI_28600
T430 270-277 Chemical denotes magenta http://purl.obolibrary.org/obo/CHEBI_87661
T431 287-296 Chemical denotes nerolidol http://purl.obolibrary.org/obo/CHEBI_7524
T432 358-368 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T433 358-363 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T434 364-368 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T435 383-397 Chemical denotes (E,E)-farnesol http://purl.obolibrary.org/obo/CHEBI_16619
T436 389-397 Chemical denotes farnesol http://purl.obolibrary.org/obo/CHEBI_28600
T437 429-439 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T438 429-434 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T439 435-439 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T440 458-467 Chemical denotes nerolidol http://purl.obolibrary.org/obo/CHEBI_7524
T441 469-477 Chemical denotes Hydrogen http://purl.obolibrary.org/obo/CHEBI_18276

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T224 0-112 Sentence denotes Figure 2 Lowest-energy docked poses of (E,E)-farnesol and (E)-nerolidol with the SARS-CoV-2 main protease (PDB:
T225 113-468 Sentence denotes 6Y84). (A) Ribbon structure of the enzyme and (E,E)-farnesol (magenta) and (E)-nerolidol (orange). (B) Solid structure of the enzyme showing (E,E)-farnesol (magenta) and (E)-nerolidol (orange) in the binding cleft. (C) Important interactions of amino acid residues with (E,E)-farnesol. (D) Important interactions of amino acid residues with (E)-nerolidol.
T226 469-521 Sentence denotes Hydrogen bonds are indicated with blue dashed lines.