PMC:7258756 / 18946-19751 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"275","span":{"begin":171,"end":189},"obj":"Gene"},{"id":"277","span":{"begin":50,"end":55},"obj":"Gene"},{"id":"279","span":{"begin":685,"end":690},"obj":"Gene"}],"attributes":[{"id":"A275","pred":"tao:has_database_id","subj":"275","obj":"Gene:3458"},{"id":"A277","pred":"tao:has_database_id","subj":"277","obj":"Gene:43740568"},{"id":"A279","pred":"tao:has_database_id","subj":"279","obj":"Gene:3458"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table II Linear B-cell epitopes predicted on the spike protein of the Indian severe acute respiratory syndrome coronavirus 2\nPeptide Epitope probability Vaxigen score Interferon (IFN)-γ response#\n243-HRSYLTPGDSSSGWTA-258 0.92 Antigen (0.602) Negative (1)\n327-FPNITNLCPFGEVFNA-342 0.82 Antigen (0.606) Negative (−0.132)\n404-EVIQIAPGQTGKIADY-419 0.86 Antigen (1.231) Negative (1)\n413-TGKIADYNYKLPDDFT-428 0.84 Antigen (0.9642) Negative (−0.334)\n1204-YEQYIKWPWYIWLGFI-1219 0.89 Antigen (0.951) Negative (1)\nEpitopes were predicted using a combination of the Bepipred server and the ABCpred prediction server. The antigenicity was predicted using the VaxiJen v2.0 tool. IFN-γ response was predicted using the INFepitope server. #Values in bracket show prediction score given by the software"}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T96","span":{"begin":19,"end":23},"obj":"Body_part"},{"id":"T97","span":{"begin":56,"end":63},"obj":"Body_part"}],"attributes":[{"id":"A96","pred":"fma_id","subj":"T96","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A97","pred":"fma_id","subj":"T97","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"Table II Linear B-cell epitopes predicted on the spike protein of the Indian severe acute respiratory syndrome coronavirus 2\nPeptide Epitope probability Vaxigen score Interferon (IFN)-γ response#\n243-HRSYLTPGDSSSGWTA-258 0.92 Antigen (0.602) Negative (1)\n327-FPNITNLCPFGEVFNA-342 0.82 Antigen (0.606) Negative (−0.132)\n404-EVIQIAPGQTGKIADY-419 0.86 Antigen (1.231) Negative (1)\n413-TGKIADYNYKLPDDFT-428 0.84 Antigen (0.9642) Negative (−0.334)\n1204-YEQYIKWPWYIWLGFI-1219 0.89 Antigen (0.951) Negative (1)\nEpitopes were predicted using a combination of the Bepipred server and the ABCpred prediction server. The antigenicity was predicted using the VaxiJen v2.0 tool. IFN-γ response was predicted using the INFepitope server. #Values in bracket show prediction score given by the software"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T151","span":{"begin":78,"end":125},"obj":"Disease"},{"id":"T152","span":{"begin":78,"end":111},"obj":"Disease"}],"attributes":[{"id":"A151","pred":"mondo_id","subj":"T151","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A152","pred":"mondo_id","subj":"T152","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Table II Linear B-cell epitopes predicted on the spike protein of the Indian severe acute respiratory syndrome coronavirus 2\nPeptide Epitope probability Vaxigen score Interferon (IFN)-γ response#\n243-HRSYLTPGDSSSGWTA-258 0.92 Antigen (0.602) Negative (1)\n327-FPNITNLCPFGEVFNA-342 0.82 Antigen (0.606) Negative (−0.132)\n404-EVIQIAPGQTGKIADY-419 0.86 Antigen (1.231) Negative (1)\n413-TGKIADYNYKLPDDFT-428 0.84 Antigen (0.9642) Negative (−0.334)\n1204-YEQYIKWPWYIWLGFI-1219 0.89 Antigen (0.951) Negative (1)\nEpitopes were predicted using a combination of the Bepipred server and the ABCpred prediction server. The antigenicity was predicted using the VaxiJen v2.0 tool. IFN-γ response was predicted using the INFepitope server. #Values in bracket show prediction score given by the software"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T129","span":{"begin":17,"end":23},"obj":"http://purl.obolibrary.org/obo/CL_0000236"},{"id":"T130","span":{"begin":126,"end":133},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T131","span":{"begin":200,"end":203},"obj":"http://purl.obolibrary.org/obo/CLO_0001178"},{"id":"T132","span":{"begin":200,"end":203},"obj":"http://purl.obolibrary.org/obo/CLO_0052433"},{"id":"T133","span":{"begin":553,"end":554},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Table II Linear B-cell epitopes predicted on the spike protein of the Indian severe acute respiratory syndrome coronavirus 2\nPeptide Epitope probability Vaxigen score Interferon (IFN)-γ response#\n243-HRSYLTPGDSSSGWTA-258 0.92 Antigen (0.602) Negative (1)\n327-FPNITNLCPFGEVFNA-342 0.82 Antigen (0.606) Negative (−0.132)\n404-EVIQIAPGQTGKIADY-419 0.86 Antigen (1.231) Negative (1)\n413-TGKIADYNYKLPDDFT-428 0.84 Antigen (0.9642) Negative (−0.334)\n1204-YEQYIKWPWYIWLGFI-1219 0.89 Antigen (0.951) Negative (1)\nEpitopes were predicted using a combination of the Bepipred server and the ABCpred prediction server. The antigenicity was predicted using the VaxiJen v2.0 tool. IFN-γ response was predicted using the INFepitope server. #Values in bracket show prediction score given by the software"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T96","span":{"begin":6,"end":8},"obj":"Chemical"},{"id":"T97","span":{"begin":56,"end":63},"obj":"Chemical"},{"id":"T98","span":{"begin":126,"end":133},"obj":"Chemical"}],"attributes":[{"id":"A96","pred":"chebi_id","subj":"T96","obj":"http://purl.obolibrary.org/obo/CHEBI_74067"},{"id":"A97","pred":"chebi_id","subj":"T97","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A98","pred":"chebi_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"}],"text":"Table II Linear B-cell epitopes predicted on the spike protein of the Indian severe acute respiratory syndrome coronavirus 2\nPeptide Epitope probability Vaxigen score Interferon (IFN)-γ response#\n243-HRSYLTPGDSSSGWTA-258 0.92 Antigen (0.602) Negative (1)\n327-FPNITNLCPFGEVFNA-342 0.82 Antigen (0.606) Negative (−0.132)\n404-EVIQIAPGQTGKIADY-419 0.86 Antigen (1.231) Negative (1)\n413-TGKIADYNYKLPDDFT-428 0.84 Antigen (0.9642) Negative (−0.334)\n1204-YEQYIKWPWYIWLGFI-1219 0.89 Antigen (0.951) Negative (1)\nEpitopes were predicted using a combination of the Bepipred server and the ABCpred prediction server. The antigenicity was predicted using the VaxiJen v2.0 tool. IFN-γ response was predicted using the INFepitope server. #Values in bracket show prediction score given by the software"}

{"project":"LitCovid-sentences","denotations":[{"id":"T143","span":{"begin":0,"end":125},"obj":"Sentence"},{"id":"T144","span":{"begin":126,"end":199},"obj":"Sentence"},{"id":"T145","span":{"begin":200,"end":261},"obj":"Sentence"},{"id":"T146","span":{"begin":262,"end":328},"obj":"Sentence"},{"id":"T147","span":{"begin":329,"end":390},"obj":"Sentence"},{"id":"T148","span":{"begin":391,"end":458},"obj":"Sentence"},{"id":"T149","span":{"begin":459,"end":522},"obj":"Sentence"},{"id":"T150","span":{"begin":523,"end":624},"obj":"Sentence"},{"id":"T151","span":{"begin":625,"end":684},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table II Linear B-cell epitopes predicted on the spike protein of the Indian severe acute respiratory syndrome coronavirus 2\nPeptide Epitope probability Vaxigen score Interferon (IFN)-γ response#\n243-HRSYLTPGDSSSGWTA-258 0.92 Antigen (0.602) Negative (1)\n327-FPNITNLCPFGEVFNA-342 0.82 Antigen (0.606) Negative (−0.132)\n404-EVIQIAPGQTGKIADY-419 0.86 Antigen (1.231) Negative (1)\n413-TGKIADYNYKLPDDFT-428 0.84 Antigen (0.9642) Negative (−0.334)\n1204-YEQYIKWPWYIWLGFI-1219 0.89 Antigen (0.951) Negative (1)\nEpitopes were predicted using a combination of the Bepipred server and the ABCpred prediction server. The antigenicity was predicted using the VaxiJen v2.0 tool. IFN-γ response was predicted using the INFepitope server. #Values in bracket show prediction score given by the software"}