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PMC:7253482 / 4198-5509 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
171 108-111 Species denotes CoV Tax:11118
172 460-468 Species denotes MERS-CoV Tax:1335626
173 749-754 Species denotes HIV-1 Tax:11676
174 177-189 Chemical denotes oligomannose
175 195-202 Chemical denotes glycans MESH:D011134
176 277-284 Chemical denotes glycans MESH:D011134
177 336-343 Chemical denotes glycans MESH:D011134
178 388-400 Chemical denotes oligomannose
179 406-413 Chemical denotes glycans MESH:D011134
180 442-448 Chemical denotes glycan MESH:D011134
181 649-665 Chemical denotes N-linked glycans
182 724-730 Chemical denotes glycan MESH:D011134
183 868-874 Chemical denotes glycan MESH:D011134
184 998-1004 Chemical denotes glycan MESH:D011134
185 1106-1118 Chemical denotes oligomannose
186 1124-1130 Chemical denotes glycan MESH:D011134
187 1181-1187 Chemical denotes glycan MESH:D011134
188 88-92 Disease denotes SARS MESH:D045169
189 94-98 Disease denotes MERS MESH:D018352
190 504-508 Disease denotes SARS MESH:D045169
191 513-517 Disease denotes MERS MESH:D018352
192 740-744 Disease denotes SARS MESH:D045169
193 895-899 Disease denotes SARS MESH:D045169

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T27 114-127 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T28 299-307 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T29 561-571 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T30 615-623 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T31 749-752 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T32 764-772 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T33 928-941 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T34 1047-1055 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T19 88-92 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T20 504-508 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T21 740-744 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T22 895-899 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T30 375-376 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 520-525 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T32 539-540 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 859-860 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 966-967 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T30 114-127 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T31 195-202 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T32 277-284 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T33 299-307 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T34 336-343 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T35 406-413 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T36 561-566 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T37 567-571 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T38 615-623 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T39 658-665 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T40 764-772 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T41 784-792 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T42 810-812 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T43 928-941 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T44 1047-1055 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T2 793-803 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes microscopy http://purl.bioontology.org/ontology/MEDDRA/10069374

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T20 28-32 http://purl.obolibrary.org/obo/BFO_0000029 denotes site

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T631 0-4 RB denotes Here
T632 4-5 -COMMA- denotes ,
T633 6-8 PRP denotes we
T634 9-16 VBP denotes provide
T635 17-23 JJ denotes global
T636 24-27 CC denotes and
T637 28-41 JJ denotes site-specific
T638 42-50 NNS denotes analyses
T639 51-53 IN denotes of
T640 54-62 JJ denotes N-linked
T641 63-76 NN denotes glycosylation
T642 77-79 IN denotes on
T643 80-87 JJ denotes soluble
T644 88-92 NNS denotes SARS
T645 92-93 -COMMA- denotes ,
T646 94-98 NNS denotes MERS
T647 99-102 CC denotes and
T648 103-107 NN denotes HKU1
T649 108-111 NN denotes CoV
T650 112-113 NN denotes S
T651 114-127 NNS denotes glycoproteins
T652 128-131 CC denotes and
T653 132-138 VB denotes reveal
T654 139-148 JJ denotes extensive
T655 149-162 NN denotes heterogeneity
T656 162-163 -COMMA- denotes ,
T657 164-171 VBG denotes ranging
T658 172-176 IN denotes from
T659 177-194 JJ denotes oligomannose-type
T660 195-202 NNS denotes glycans
T661 203-205 TO denotes to
T662 206-222 JJ denotes highly-processed
T663 223-235 JJ denotes complex-type
T664 236-249 NN denotes glycosylation
T665 251-254 DT denotes The
T666 255-265 JJ denotes structural
T667 266-273 NN denotes mapping
T668 274-276 IN denotes of
T669 277-284 NNS denotes glycans
T670 285-287 IN denotes of
T671 288-296 JJ denotes trimeric
T672 297-298 NN denotes S
T673 299-307 NNS denotes proteins
T674 308-316 VBD denotes revealed
T675 317-321 IN denotes that
T676 322-326 DT denotes some
T677 327-329 IN denotes of
T678 330-335 DT denotes these
T679 336-343 NNS denotes glycans
T680 344-354 VBP denotes contribute
T681 355-357 TO denotes to
T682 358-361 DT denotes the
T683 362-371 NN denotes formation
T684 372-374 IN denotes of
T685 375-376 DT denotes a
T686 377-384 NN denotes cluster
T687 385-387 IN denotes of
T688 388-405 JJ denotes oligomannose-type
T689 406-413 NNS denotes glycans
T690 414-416 IN denotes at
T691 417-425 JJ denotes specific
T692 426-433 NNS denotes regions
T693 434-436 IN denotes of
T694 437-441 JJ denotes high
T695 442-448 NN denotes glycan
T696 449-456 NN denotes density
T697 457-459 IN denotes on
T698 460-468 NNP denotes MERS-CoV
T699 469-471 NNP denotes S.
T700 472-481 NNP denotes Molecular
T701 482-491 NN denotes evolution
T702 492-500 NN denotes analysis
T703 501-503 IN denotes of
T704 504-508 NNP denotes SARS
T705 509-512 CC denotes and
T706 513-517 NNP denotes MERS
T707 518-519 NN denotes S
T708 520-525 NNS denotes genes
T709 526-530 RB denotes also
T710 531-538 VBZ denotes reveals
T711 539-540 DT denotes a
T712 541-547 JJR denotes higher
T713 548-557 NN denotes incidence
T714 558-560 IN denotes of
T715 561-571 JJ denotes amino-acid
T716 572-581 NN denotes diversity
T717 582-584 IN denotes on
T718 585-588 DT denotes the
T719 589-596 VBN denotes exposed
T720 597-605 NNS denotes surfaces
T721 606-608 IN denotes of
T722 609-612 DT denotes the
T723 613-614 NN denotes S
T724 615-623 NNS denotes proteins
T725 624-628 WDT denotes that
T726 629-632 VBP denotes are
T727 633-636 RB denotes not
T728 637-645 VBN denotes occluded
T729 646-648 IN denotes by
T730 649-657 JJ denotes N-linked
T731 658-665 NNS denotes glycans
T732 667-669 IN denotes In
T733 670-678 NN denotes addition
T734 678-679 -COMMA- denotes ,
T735 680-682 PRP denotes we
T736 683-690 VBP denotes compare
T737 691-694 DT denotes the
T738 695-705 NNS denotes structures
T739 706-708 IN denotes of
T740 709-712 DT denotes the
T741 713-723 JJ denotes respective
T742 724-730 NN denotes glycan
T743 731-736 NNS denotes coats
T744 737-739 IN denotes of
T745 740-744 NN denotes SARS
T746 745-748 CC denotes and
T747 749-754 NN denotes HIV-1
T748 755-763 NN denotes envelope
T749 764-772 NNS denotes proteins
T750 773-778 VBG denotes using
T751 779-792 NN denotes cryo-electron
T752 793-803 NN denotes microscopy
T753 804-805 -LRB- denotes (
T754 805-812 NN denotes cryo-EM
T755 812-813 -RRB- denotes )
T756 814-817 CC denotes and
T757 818-831 JJ denotes computational
T758 832-841 NN denotes modelling
T759 841-842 -COMMA- denotes ,
T760 843-848 WDT denotes which
T761 849-858 VBP denotes delineate
T762 859-860 DT denotes a
T763 861-867 JJ denotes sparse
T764 868-874 NN denotes glycan
T765 875-881 NN denotes shield
T766 882-891 VBD denotes exhibited
T767 892-894 IN denotes on
T768 895-899 NNP denotes SARS
T769 900-901 NN denotes S
T770 902-910 VBN denotes compared
T771 911-915 IN denotes with
T772 916-921 JJ denotes other
T773 922-927 JJ denotes viral
T774 928-941 NNS denotes glycoproteins
T775 943-945 PRP denotes We
T776 946-955 RB denotes therefore
T777 956-965 VBD denotes undertook
T778 966-967 DT denotes a
T779 968-979 JJ denotes comparative
T780 980-988 NN denotes analysis
T781 989-991 IN denotes of
T782 992-997 JJ denotes viral
T783 998-1004 NN denotes glycan
T784 1005-1012 NNS denotes shields
T785 1013-1017 IN denotes from
T786 1018-1031 VBN denotes characterized
T787 1032-1037 NN denotes class
T788 1038-1039 CD denotes I
T789 1040-1046 NN denotes fusion
T790 1047-1055 NNS denotes proteins
T791 1056-1058 TO denotes to
T792 1059-1068 VB denotes highlight
T793 1069-1072 WRB denotes how
T794 1073-1086 NN denotes glycosylation
T795 1087-1094 NN denotes density
T796 1095-1105 VBZ denotes influences
T797 1106-1123 JJ denotes oligomannose-type
T798 1124-1130 NN denotes glycan
T799 1131-1140 NN denotes abundance
T800 1140-1141 -COMMA- denotes ,
T801 1142-1145 CC denotes and
T802 1146-1149 DT denotes the
T803 1150-1162 NN denotes relationship
T804 1163-1170 IN denotes between
T805 1171-1180 JJ denotes effective
T806 1181-1187 NN denotes glycan
T807 1188-1195 NNS denotes shields
T808 1196-1199 CC denotes and
T809 1200-1205 JJ denotes viral
T810 1206-1213 NN denotes evasion
T811 1214-1221 NN denotes ability
T812 1223-1231 RB denotes Together
T813 1231-1232 -COMMA- denotes ,
T814 1233-1238 DT denotes these
T815 1239-1243 NNS denotes data
T816 1244-1254 VBP denotes underscore
T817 1255-1258 DT denotes the
T818 1259-1269 NN denotes importance
T819 1270-1272 IN denotes of
T820 1273-1286 NN denotes glycosylation
T821 1287-1289 IN denotes in
T822 1290-1295 JJ denotes viral
T823 1296-1302 JJ denotes immune
T824 1303-1310 NN denotes evasion
R635 T652 T631 arg1Of and,Here
R636 T652 T632 arg1Of and,","
R637 T633 T634 arg1Of we,provide
R638 T638 T634 arg2Of analyses,provide
R639 T638 T635 arg1Of analyses,global
R640 T635 T636 arg1Of global,and
R641 T637 T636 arg2Of site-specific,and
R642 T638 T637 arg1Of analyses,site-specific
R643 T638 T639 arg1Of analyses,of
R644 T641 T639 arg2Of glycosylation,of
R645 T641 T640 arg1Of glycosylation,N-linked
R646 T634 T642 arg1Of provide,on
R647 T647 T642 arg2Of and,on
R648 T644 T643 arg1Of SARS,soluble
R649 T644 T645 arg1Of SARS,","
R650 T646 T645 arg2Of MERS,","
R651 T645 T647 arg1Of ",",and
R652 T651 T647 arg2Of glycoproteins,and
R653 T651 T648 arg1Of glycoproteins,HKU1
R654 T651 T649 arg1Of glycoproteins,CoV
R655 T651 T650 arg1Of glycoproteins,S
R656 T634 T652 arg1Of provide,and
R657 T653 T652 arg2Of reveal,and
R658 T633 T653 arg1Of we,reveal
R659 T655 T653 arg2Of heterogeneity,reveal
R660 T655 T654 arg1Of heterogeneity,extensive
R661 T655 T656 arg1Of heterogeneity,","
R662 T655 T657 arg1Of heterogeneity,ranging
R663 T657 T658 arg1Of ranging,from
R664 T660 T658 arg2Of glycans,from
R665 T660 T659 arg1Of glycans,oligomannose-type
R666 T655 T661 arg1Of heterogeneity,to
R667 T664 T661 arg2Of glycosylation,to
R668 T664 T662 arg1Of glycosylation,highly-processed
R669 T664 T663 arg1Of glycosylation,complex-type
R670 T667 T665 arg1Of mapping,The
R671 T667 T666 arg1Of mapping,structural
R672 T667 T668 arg1Of mapping,of
R673 T669 T668 arg2Of glycans,of
R674 T669 T670 arg1Of glycans,of
R675 T673 T670 arg2Of proteins,of
R676 T673 T671 arg1Of proteins,trimeric
R677 T673 T672 arg1Of proteins,S
R678 T667 T674 arg1Of mapping,revealed
R679 T680 T674 arg2Of contribute,revealed
R680 T680 T675 arg1Of contribute,that
R681 T676 T677 arg1Of some,of
R682 T679 T677 arg2Of glycans,of
R683 T679 T678 arg1Of glycans,these
R684 T676 T680 arg1Of some,contribute
R685 T680 T681 arg1Of contribute,to
R686 T683 T681 arg2Of formation,to
R687 T683 T682 arg1Of formation,the
R688 T683 T684 arg1Of formation,of
R689 T686 T684 arg2Of cluster,of
R690 T686 T685 arg1Of cluster,a
R691 T686 T687 arg1Of cluster,of
R692 T689 T687 arg2Of glycans,of
R693 T689 T688 arg1Of glycans,oligomannose-type
R694 T680 T690 arg1Of contribute,at
R695 T692 T690 arg2Of regions,at
R696 T692 T691 arg1Of regions,specific
R697 T692 T693 arg1Of regions,of
R698 T696 T693 arg2Of density,of
R699 T696 T694 arg1Of density,high
R700 T696 T695 arg1Of density,glycan
R701 T680 T697 arg1Of contribute,on
R702 T710 T697 arg2Of reveals,on
R703 T700 T698 arg1Of Molecular,MERS-CoV
R704 T700 T699 arg1Of Molecular,S.
R705 T702 T700 arg1Of analysis,Molecular
R706 T702 T701 arg1Of analysis,evolution
R707 T702 T703 arg1Of analysis,of
R708 T708 T703 arg2Of genes,of
R709 T708 T704 arg1Of genes,SARS
R710 T704 T705 arg1Of SARS,and
R711 T706 T705 arg2Of MERS,and
R712 T708 T706 arg1Of genes,MERS
R713 T708 T707 arg1Of genes,S
R714 T710 T709 arg1Of reveals,also
R715 T702 T710 arg1Of analysis,reveals
R716 T713 T710 arg2Of incidence,reveals
R717 T713 T711 arg1Of incidence,a
R718 T713 T712 arg1Of incidence,higher
R719 T713 T714 arg1Of incidence,of
R720 T716 T714 arg2Of diversity,of
R721 T716 T715 arg1Of diversity,amino-acid
R722 T710 T717 arg1Of reveals,on
R723 T720 T717 arg2Of surfaces,on
R724 T720 T718 arg1Of surfaces,the
R725 T720 T719 arg2Of surfaces,exposed
R726 T720 T721 arg1Of surfaces,of
R727 T724 T721 arg2Of proteins,of
R728 T724 T722 arg1Of proteins,the
R729 T724 T723 arg1Of proteins,S
R730 T720 T725 arg1Of surfaces,that
R731 T720 T726 arg1Of surfaces,are
R732 T728 T726 arg2Of occluded,are
R733 T728 T727 arg1Of occluded,not
R734 T731 T728 arg1Of glycans,occluded
R735 T720 T728 arg2Of surfaces,occluded
R736 T731 T729 arg2Of glycans,by
R737 T731 T730 arg1Of glycans,N-linked
R738 T746 T732 arg1Of and,In
R739 T733 T732 arg2Of addition,In
R740 T746 T734 arg1Of and,","
R741 T735 T736 arg1Of we,compare
R742 T738 T736 arg2Of structures,compare
R743 T738 T737 arg1Of structures,the
R744 T738 T739 arg1Of structures,of
R745 T743 T739 arg2Of coats,of
R746 T743 T740 arg1Of coats,the
R747 T743 T741 arg1Of coats,respective
R748 T743 T742 arg1Of coats,glycan
R749 T743 T744 arg1Of coats,of
R750 T745 T744 arg2Of SARS,of
R751 T736 T746 arg1Of compare,and
R752 T766 T746 arg2Of exhibited,and
R753 T749 T747 arg1Of proteins,HIV-1
R754 T749 T748 arg1Of proteins,envelope
R755 T749 T750 arg1Of proteins,using
R756 T756 T750 arg2Of and,using
R757 T752 T751 arg1Of microscopy,cryo-electron
R758 T752 T753 arg1Of microscopy,(
R759 T754 T753 arg2Of cryo-EM,(
R760 T755 T753 arg3Of ),(
R761 T752 T756 arg1Of microscopy,and
R762 T758 T756 arg2Of modelling,and
R763 T758 T757 arg1Of modelling,computational
R764 T758 T759 arg1Of modelling,","
R765 T758 T760 arg1Of modelling,which
R766 T758 T761 arg1Of modelling,delineate
R767 T765 T761 arg2Of shield,delineate
R768 T765 T762 arg1Of shield,a
R769 T765 T763 arg1Of shield,sparse
R770 T765 T764 arg1Of shield,glycan
R771 T749 T766 arg1Of proteins,exhibited
R772 T769 T766 arg2Of S,exhibited
R773 T766 T767 arg1Of exhibited,on
R774 T768 T767 arg2Of SARS,on
R775 T766 T770 arg1Of exhibited,compared
R776 T771 T770 arg2Of with,compared
R777 T774 T771 arg2Of glycoproteins,with
R778 T774 T772 arg1Of glycoproteins,other
R779 T774 T773 arg1Of glycoproteins,viral
R780 T777 T776 arg1Of undertook,therefore
R781 T775 T777 arg1Of We,undertook
R782 T780 T777 arg2Of analysis,undertook
R783 T780 T778 arg1Of analysis,a
R784 T780 T779 arg1Of analysis,comparative
R785 T780 T781 arg1Of analysis,of
R786 T801 T781 arg2Of and,of
R787 T784 T782 arg1Of shields,viral
R788 T784 T783 arg1Of shields,glycan
R789 T784 T785 arg1Of shields,from
R790 T790 T785 arg2Of proteins,from
R791 T790 T786 arg2Of proteins,characterized
R792 T790 T787 arg1Of proteins,class
R793 T790 T788 arg1Of proteins,I
R794 T790 T789 arg1Of proteins,fusion
R795 T792 T791 arg1Of highlight,to
R796 T784 T791 modOf shields,to
R797 T793 T792 arg2Of how,highlight
R798 T796 T793 arg1Of influences,how
R799 T795 T794 arg1Of density,glycosylation
R800 T795 T796 arg1Of density,influences
R801 T799 T796 arg2Of abundance,influences
R802 T799 T797 arg1Of abundance,oligomannose-type
R803 T799 T798 arg1Of abundance,glycan
R804 T801 T800 arg1Of and,","
R805 T784 T801 arg1Of shields,and
R806 T803 T801 arg2Of relationship,and
R807 T803 T802 arg1Of relationship,the
R808 T803 T804 arg1Of relationship,between
R809 T808 T804 arg2Of and,between
R810 T807 T805 arg1Of shields,effective
R811 T807 T806 arg1Of shields,glycan
R812 T807 T808 arg1Of shields,and
R813 T811 T808 arg2Of ability,and
R814 T811 T809 arg1Of ability,viral
R815 T811 T810 arg1Of ability,evasion
R816 T816 T812 arg1Of underscore,Together
R817 T816 T813 arg1Of underscore,","
R818 T815 T814 arg1Of data,these
R819 T815 T816 arg1Of data,underscore
R820 T818 T816 arg2Of importance,underscore
R821 T818 T817 arg1Of importance,the
R822 T818 T819 arg1Of importance,of
R823 T820 T819 arg2Of glycosylation,of
R824 T818 T821 arg1Of importance,in
R825 T824 T821 arg2Of evasion,in
R826 T824 T822 arg1Of evasion,viral
R827 T824 T823 arg1Of evasion,immune

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T27 114-127 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T28 299-307 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T29 561-571 Body_part denotes amino-acid http://purl.org/sig/ont/fma/fma82739
T30 615-623 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T31 749-752 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T32 764-772 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T33 928-941 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T34 1047-1055 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T26 114-127 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T27 195-202 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T28 277-284 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T29 299-307 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T30 336-343 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T31 406-413 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T32 561-566 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T33 615-623 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T34 658-665 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154
T35 764-772 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T36 928-941 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T37 1047-1055 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T31 88-92 Species denotes SARS NCBItxid:694009
T32 94-98 Species denotes MERS NCBItxid:1335626
T33 103-111 Species denotes HKU1 CoV NCBItxid:290028
T34 460-468 Species denotes MERS-CoV NCBItxid:1335626
T35 504-508 Species denotes SARS NCBItxid:694009
T36 513-517 Species denotes MERS NCBItxid:1335626
T37 740-744 Species denotes SARS NCBItxid:694009
T38 749-754 Species denotes HIV-1 NCBItxid:11676
T39 895-899 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T24 0-250 Sentence denotes Here, we provide global and site-specific analyses of N-linked glycosylation on soluble SARS, MERS and HKU1 CoV S glycoproteins and reveal extensive heterogeneity, ranging from oligomannose-type glycans to highly-processed complex-type glycosylation.
T25 251-471 Sentence denotes The structural mapping of glycans of trimeric S proteins revealed that some of these glycans contribute to the formation of a cluster of oligomannose-type glycans at specific regions of high glycan density on MERS-CoV S.
T26 472-666 Sentence denotes Molecular evolution analysis of SARS and MERS S genes also reveals a higher incidence of amino-acid diversity on the exposed surfaces of the S proteins that are not occluded by N-linked glycans.
T27 667-942 Sentence denotes In addition, we compare the structures of the respective glycan coats of SARS and HIV-1 envelope proteins using cryo-electron microscopy (cryo-EM) and computational modelling, which delineate a sparse glycan shield exhibited on SARS S compared with other viral glycoproteins.
T28 943-1222 Sentence denotes We therefore undertook a comparative analysis of viral glycan shields from characterized class I fusion proteins to highlight how glycosylation density influences oligomannose-type glycan abundance, and the relationship between effective glycan shields and viral evasion ability.
T29 1223-1311 Sentence denotes Together, these data underscore the importance of glycosylation in viral immune evasion.

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T19 88-92 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T20 504-508 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T21 740-744 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T22 895-899 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
188 88-92 Disease denotes SARS MESH:D045169
189 94-98 Disease denotes MERS MESH:D018352
171 108-111 Species denotes CoV Tax:11118
174 177-189 Chemical denotes oligomannose
175 195-202 Chemical denotes glycans MESH:D011134
176 277-284 Chemical denotes glycans MESH:D011134
177 336-343 Chemical denotes glycans MESH:D011134
178 388-400 Chemical denotes oligomannose
179 406-413 Chemical denotes glycans MESH:D011134
180 442-448 Chemical denotes glycan MESH:D011134
172 460-468 Species denotes MERS-CoV Tax:1335626
190 504-508 Disease denotes SARS MESH:D045169
191 513-517 Disease denotes MERS MESH:D018352
181 649-665 Chemical denotes N-linked glycans
182 724-730 Chemical denotes glycan MESH:D011134
192 740-744 Disease denotes SARS MESH:D045169
173 749-754 Species denotes HIV-1 Tax:11676
183 868-874 Chemical denotes glycan MESH:D011134
193 895-899 Disease denotes SARS MESH:D045169
184 998-1004 Chemical denotes glycan MESH:D011134
185 1106-1118 Chemical denotes oligomannose
186 1124-1130 Chemical denotes glycan MESH:D011134
187 1181-1187 Chemical denotes glycan MESH:D011134

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T1718 112-127 Protein denotes S glycoproteins https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T1817 297-307 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T1850 613-623 Protein denotes S proteins https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T1883 755-772 Protein denotes envelope proteins https://www.uniprot.org/uniprot/P24123|https://www.uniprot.org/uniprot/P0C782|https://www.uniprot.org/uniprot/P0C781|https://www.uniprot.org/uniprot/C1JJY3
T1887 928-941 Protein denotes glycoproteins https://www.uniprot.org/uniprot/Q9QSP1|https://www.uniprot.org/uniprot/Q9QJT6|https://www.uniprot.org/uniprot/Q9JGT4|https://www.uniprot.org/uniprot/Q9IPJ6|https://www.uniprot.org/uniprot/Q9DIC6|https://www.uniprot.org/uniprot/Q91DS0|https://www.uniprot.org/uniprot/Q91C28|https://www.uniprot.org/uniprot/Q8QQA2|https://www.uniprot.org/uniprot/Q8QPE5|https://www.uniprot.org/uniprot/Q8QPE4|https://www.uniprot.org/uniprot/Q8QPE3|https://www.uniprot.org/uniprot/Q8JTH0|https://www.uniprot.org/uniprot/Q8BDV6|https://www.uniprot.org/uniprot/Q8B6J6|https://www.uniprot.org/uniprot/Q8B0I1|https://www.uniprot.org/uniprot/Q8B0H6|https://www.uniprot.org/uniprot/Q8B0H1|https://www.uniprot.org/uniprot/Q89669|https://www.uniprot.org/uniprot/Q85213|https://www.uniprot.org/uniprot/Q82706|https://www.uniprot.org/uniprot/Q82683|https://www.uniprot.org/uniprot/Q82020|https://www.uniprot.org/uniprot/Q787B5|https://www.uniprot.org/uniprot/Q77SK0|https://www.uniprot.org/uniprot/Q77N36|https://www.uniprot.org/uniprot/Q76G52|https://www.uniprot.org/uniprot/Q75T09|https://www.uniprot.org/uniprot/Q6X1D5|https://www.uniprot.org/uniprot/Q6X1D1|https://www.uniprot.org/uniprot/Q6TYA0|https://www.uniprot.org/uniprot/Q6E0W7|https://www.uniprot.org/uniprot/Q66T62|https://www.uniprot.org/uniprot/Q5VKP3|https://www.uniprot.org/uniprot/Q5VKN9|https://www.uniprot.org/uniprot/Q5K2K4|https://www.uniprot.org/uniprot/Q5IX93|https://www.uniprot.org/uniprot/Q5IX92|https://www.uniprot.org/uniprot/Q5IX91|https://www.uniprot.org/uniprot/Q5IX90|https://www.uniprot.org/uniprot/Q5IX89|https://www.uniprot.org/uniprot/Q5IX88|https://www.uniprot.org/uniprot/Q5IX87|https://www.uniprot.org/uniprot/Q5GA86|https://www.uniprot.org/uniprot/Q58FH1|https://www.uniprot.org/uniprot/Q4VKV3|https://www.uniprot.org/uniprot/Q4F900|https://www.uniprot.org/uniprot/Q49LL3|https://www.uniprot.org/uniprot/Q49IU2|https://www.uniprot.org/uniprot/Q49IU1|https://www.uniprot.org/uniprot/Q49IT9|https://www.uniprot.org/uniprot/Q49IT8|https://www.uniprot.org/uniprot/Q49AV0|https://www.uniprot.org/uniprot/Q0GBY1|https://www.uniprot.org/uniprot/Q0GBX6|https://www.uniprot.org/uniprot/Q08089|https://www.uniprot.org/uniprot/P32595|https://www.uniprot.org/uniprot/P32550|https://www.uniprot.org/uniprot/P19462|https://www.uniprot.org/uniprot/P16288|https://www.uniprot.org/uniprot/P15199|https://www.uniprot.org/uniprot/P13180|https://www.uniprot.org/uniprot/P0C572|https://www.uniprot.org/uniprot/P08667|https://www.uniprot.org/uniprot/P08163|https://www.uniprot.org/uniprot/P07923|https://www.uniprot.org/uniprot/P04884|https://www.uniprot.org/uniprot/P04883|https://www.uniprot.org/uniprot/P04882|https://www.uniprot.org/uniprot/P03524|https://www.uniprot.org/uniprot/P03522|https://www.uniprot.org/uniprot/O92284|https://www.uniprot.org/uniprot/O56677|https://www.uniprot.org/uniprot/O10236|https://www.uniprot.org/uniprot/J7HBH4|https://www.uniprot.org/uniprot/D8V075|https://www.uniprot.org/uniprot/A7WNB3|https://www.uniprot.org/uniprot/A4UHQ6|https://www.uniprot.org/uniprot/A4UHQ1|https://www.uniprot.org/uniprot/A3RM22|https://www.uniprot.org/uniprot/A3F5R8|https://www.uniprot.org/uniprot/A3F5R3|https://www.uniprot.org/uniprot/A3F5Q8|https://www.uniprot.org/uniprot/A3F5N3|https://www.uniprot.org/uniprot/A3F5M3|https://www.uniprot.org/uniprot/A3F5L8

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T14 63-76 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T15 236-249 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T16 362-371 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T17 1073-1086 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T18 1273-1286 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T19 1296-1310 http://purl.obolibrary.org/obo/GO_0020012 denotes immune evasion
T20 1296-1310 http://purl.obolibrary.org/obo/GO_0051805 denotes immune evasion

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T12 63-76 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T13 236-249 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T14 362-371 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T15 1073-1086 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T16 1273-1286 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T17 1296-1310 http://purl.obolibrary.org/obo/GO_0042783 denotes immune evasion

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T13 54-76 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T14 63-76 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T15 236-249 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T16 362-371 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T17 1073-1086 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T18 1273-1286 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T19 1296-1310 http://purl.obolibrary.org/obo/GO_0042783 denotes immune evasion

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T24 0-250 Sentence denotes Here, we provide global and site-specific analyses of N-linked glycosylation on soluble SARS, MERS and HKU1 CoV S glycoproteins and reveal extensive heterogeneity, ranging from oligomannose-type glycans to highly-processed complex-type glycosylation.
T25 251-471 Sentence denotes The structural mapping of glycans of trimeric S proteins revealed that some of these glycans contribute to the formation of a cluster of oligomannose-type glycans at specific regions of high glycan density on MERS-CoV S.
T26 472-666 Sentence denotes Molecular evolution analysis of SARS and MERS S genes also reveals a higher incidence of amino-acid diversity on the exposed surfaces of the S proteins that are not occluded by N-linked glycans.
T27 667-942 Sentence denotes In addition, we compare the structures of the respective glycan coats of SARS and HIV-1 envelope proteins using cryo-electron microscopy (cryo-EM) and computational modelling, which delineate a sparse glycan shield exhibited on SARS S compared with other viral glycoproteins.
T28 943-1222 Sentence denotes We therefore undertook a comparative analysis of viral glycan shields from characterized class I fusion proteins to highlight how glycosylation density influences oligomannose-type glycan abundance, and the relationship between effective glycan shields and viral evasion ability.
T29 1223-1311 Sentence denotes Together, these data underscore the importance of glycosylation in viral immune evasion.