PMC:7253482 / 32952-33391
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 998 | 50-53 | Gene | denotes | GPC | Gene:2995 |
| 999 | 270-275 | Gene | denotes | spike | Gene:43740568 |
| 1000 | 54-59 | Gene | denotes | spike | Gene:43740568 |
| 1001 | 69-77 | Species | denotes | SARS-CoV | Tax:694009 |
| 1002 | 143-151 | Species | denotes | MERS-CoV | Tax:1335626 |
| 1003 | 340-346 | Species | denotes | humans | Tax:9606 |
| 1004 | 379-387 | Species | denotes | MERS-CoV | Tax:1335626 |
| 1005 | 369-373 | Disease | denotes | SARS | MESH:D045169 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T169 | 60-64 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T170 | 176-182 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T171 | 276-280 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T99 | 69-77 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T100 | 69-73 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T101 | 369-373 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T237 | 60-64 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T238 | 276-280 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T239 | 340-346 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
LitCovid-sample-PD-FMA
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T167 | 60-64 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T168 | 176-182 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T169 | 276-280 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
LitCovid-sample-PD-NCBITaxon
| Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
|---|---|---|---|---|---|
| T205 | 69-77 | Species | denotes | SARS-CoV | NCBItxid:694009 |
| T206 | 69-73 | Species | denotes | SARS | NCBItxid:694009 |
| T207 | 143-151 | Species | denotes | MERS-CoV | NCBItxid:1335626 |
| T208 | 340-346 | Species | denotes | humans | NCBItxid:9605 |
| T209 | 369-373 | Species | denotes | SARS | NCBItxid:694009 |
| T210 | 379-387 | Species | denotes | MERS-CoV | NCBItxid:1335626 |
LitCovid-sample-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T197 | 0-138 | Sentence | denotes | Publicly available sequences encoding full-length GPC spike gene for SARS-CoV (3765 bp) were downloaded from GenBank and manually aligned. |
| T198 | 139-220 | Sentence | denotes | For MERS-CoV, we leveraged the whole genome alignment collated by Dudas et al.69. |
| T199 | 221-347 | Sentence | denotes | Specifically, the alignment corresponding to the spike gene was extracted (4059 bp), excluding sequences isolated from humans. |
| T200 | 348-439 | Sentence | denotes | Final alignments for SARS- and MERS-CoV corresponded to 70 and 100 sequences, respectively. |
LitCovid-sample-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T94 | 69-77 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T95 | 69-73 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T96 | 369-373 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-sample-Pubtator
| Id | Subject | Object | Predicate | Lexical cue | pubann:denotes |
|---|---|---|---|---|---|
| 998 | 50-53 | Gene | denotes | GPC | Gene:2995 |
| 1000 | 54-59 | Gene | denotes | spike | Gene:43740568 |
| 1001 | 69-77 | Species | denotes | SARS-CoV | Tax:694009 |
| 1002 | 143-151 | Species | denotes | MERS-CoV | Tax:1335626 |
| 999 | 270-275 | Gene | denotes | spike | Gene:43740568 |
| 1003 | 340-346 | Species | denotes | humans | Tax:9606 |
| 1005 | 369-373 | Disease | denotes | SARS | MESH:D045169 |
| 1004 | 379-387 | Species | denotes | MERS-CoV | Tax:1335626 |
LitCovid-sample-UniProt
| Id | Subject | Object | Predicate | Lexical cue | uniprot_id |
|---|---|---|---|---|---|
| T6448 | 38-42 | Protein | denotes | full | https://www.uniprot.org/uniprot/Q8N1N2 |
| T6449 | 50-53 | Protein | denotes | GPC | https://www.uniprot.org/uniprot/P03711 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T197 | 0-138 | Sentence | denotes | Publicly available sequences encoding full-length GPC spike gene for SARS-CoV (3765 bp) were downloaded from GenBank and manually aligned. |
| T198 | 139-220 | Sentence | denotes | For MERS-CoV, we leveraged the whole genome alignment collated by Dudas et al.69. |
| T199 | 221-347 | Sentence | denotes | Specifically, the alignment corresponding to the spike gene was extracted (4059 bp), excluding sequences isolated from humans. |
| T200 | 348-439 | Sentence | denotes | Final alignments for SARS- and MERS-CoV corresponded to 70 and 100 sequences, respectively. |