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PMC:7199903 / 5323-6389 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T31 46-58 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T32 109-121 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T33 266-273 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T34 407-412 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T35 545-552 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 611-617 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T37 629-634 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T38 682-687 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T39 871-878 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T40 918-925 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 957-964 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 407-412 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T3 611-617 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T25 33-41 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T26 96-104 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 318-321 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T29 532-540 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 858-866 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T31 905-913 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T38 61-62 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T39 176-179 http://purl.obolibrary.org/obo/CLO_0009141 denotes S/T
T40 176-179 http://purl.obolibrary.org/obo/CLO_0050980 denotes S/T
T41 362-369 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T42 474-475 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T43 595-600 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T44 601-617 http://www.ebi.ac.uk/efo/EFO_0000927 denotes embryonic kidney
T45 624-634 http://purl.obolibrary.org/obo/CLO_0054159 denotes 293F cells
T46 682-687 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T44 46-58 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T45 109-121 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T46 220-223 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T49 244-247 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T51 252-255 Chemical denotes Thr http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013
T53 260-263 Chemical denotes Pro http://purl.obolibrary.org/obo/CHEBI_50342
T54 266-273 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T55 362-369 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T56 371-373 Chemical denotes FP http://purl.obolibrary.org/obo/CHEBI_74750
T57 437-439 Chemical denotes CD http://purl.obolibrary.org/obo/CHEBI_8673
T58 468-470 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T60 477-480 Chemical denotes SDS http://purl.obolibrary.org/obo/CHEBI_8984
T61 481-495 Chemical denotes polyacrylamide http://purl.obolibrary.org/obo/CHEBI_51135|http://purl.obolibrary.org/obo/CHEBI_53656|http://purl.obolibrary.org/obo/CHEBI_60766
T64 545-552 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T65 830-832 Chemical denotes EM http://purl.obolibrary.org/obo/CHEBI_73507
T66 871-878 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T67 918-925 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T68 957-964 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T30 629-634 http://purl.obolibrary.org/obo/CL_0000000 denotes cells
T31 682-687 http://purl.obolibrary.org/obo/CL_0000000 denotes cells

LitCovid-sample-Enju

Id Subject Object Predicate Lexical cue
T885 187-188 NN denotes X
T886 189-190 SYM denotes ≠
T887 191-192 NN denotes P
T888 192-193 -RRB- denotes )
T889 194-197 VBP denotes are
T890 198-203 VBN denotes shown
T891 204-206 IN denotes as
T892 207-215 NNS denotes branches
T893 216-217 -LRB- denotes (
T894 217-218 NN denotes N
T895 218-219 -COMMA- denotes ,
T896 220-223 NNP denotes Asn
T897 223-224 -SEMICOLON- denotes ;
T898 225-226 SYM denotes X
T899 226-227 -COMMA- denotes ,
T900 228-231 DT denotes any
T901 232-239 NN denotes residue
T902 239-240 -SEMICOLON- denotes ;
T903 241-242 NN denotes S
T904 242-243 -COMMA- denotes ,
T905 244-247 NN denotes Ser
T906 247-248 -SEMICOLON- denotes ;
T907 249-250 NN denotes T
T908 250-251 -COMMA- denotes ,
T909 252-255 NNP denotes Thr
T910 255-256 -SEMICOLON- denotes ;
T911 257-258 NN denotes P
T912 258-259 -COMMA- denotes ,
T913 260-263 NNP denotes Pro
T914 263-264 -RRB- denotes )
T915 266-273 NN denotes Protein
T916 274-281 NNS denotes domains
T917 282-285 VBP denotes are
T918 286-297 VBN denotes illustrated
T919 297-298 -COLON- denotes :
T920 299-309 JJ denotes N-terminal
T921 310-316 NN denotes domain
T922 317-318 -LRB- denotes (
T923 318-321 NN denotes NTD
T924 321-322 -RRB- denotes )
T925 322-323 -COMMA- denotes ,
T926 324-332 NN denotes receptor
T927 333-340 NN denotes binding
T928 341-347 NN denotes domain
T929 348-349 -LRB- denotes (
T930 349-352 NN denotes RBD
T931 352-353 -RRB- denotes )
T932 353-354 -COMMA- denotes ,
T933 355-361 NN denotes fusion
T934 362-369 NN denotes peptide
T935 370-371 -LRB- denotes (
T936 371-373 NN denotes FP
T937 373-374 -RRB- denotes )
T938 374-375 -COMMA- denotes ,
T939 376-382 NN denotes heptad
T940 383-389 NN denotes repeat
T941 390-391 CD denotes 1
T942 392-393 -LRB- denotes (
T943 393-396 NN denotes HR1
T944 396-397 -RRB- denotes )
T945 397-398 -COMMA- denotes ,
T946 399-406 JJ denotes central
T947 407-412 NN denotes helix
T948 413-414 -LRB- denotes (
T949 414-416 NN denotes CH
T950 416-417 -RRB- denotes )
T951 417-418 -COMMA- denotes ,
T952 419-428 NN denotes connector
T953 429-435 NN denotes domain
T954 436-437 -LRB- denotes (
T955 437-439 NN denotes CD
T956 439-440 -RRB- denotes )
T957 440-441 -COMMA- denotes ,
T958 442-445 CC denotes and
T959 446-459 JJ denotes transmembrane
T960 460-466 NN denotes domain
T961 467-468 -LRB- denotes (
T962 468-470 NN denotes TM
T963 470-471 -RRB- denotes )
T964 473-474 -LRB- denotes (
T965 474-475 NN denotes B
T966 475-476 -RRB- denotes )
T967 477-495 NN denotes SDS–polyacrylamide
T968 496-499 NN denotes gel
T969 500-515 NN denotes electrophoresis
T970 516-524 NN denotes analysis
T971 525-527 IN denotes of
T972 528-531 DT denotes the
T973 532-542 NN denotes SARS-CoV-2
T974 543-544 NN denotes S
T975 545-552 NN denotes protein
T976 553-554 -LRB- denotes (
T977 554-563 VBN denotes indicated
T978 564-566 IN denotes by
T979 567-570 DT denotes the
T980 571-580 NN denotes arrowhead
T981 580-581 -RRB- denotes )
T982 582-591 VBN denotes expressed
T983 592-594 IN denotes in
T984 595-600 JJ denotes human
T985 601-610 JJ denotes embryonic
T986 611-617 NN denotes kidney
T987 618-619 -LRB- denotes (
T988 619-622 NN denotes HEK
T989 622-623 -RRB- denotes )
T990 624-628 NN denotes 293F
T991 629-634 NNS denotes cells
T992 636-640 NN denotes Lane
T993 641-642 CD denotes 1
T994 642-643 -COLON- denotes :
T995 644-652 VBN denotes filtered
T996 653-664 NN denotes supernatant
T997 665-669 IN denotes from
T998 670-681 VBN denotes transfected
T999 682-687 NNS denotes cells
T1000 687-688 -SEMICOLON- denotes ;
T1001 689-693 NN denotes lane
T1002 694-695 CD denotes 2
T1003 695-696 -COLON- denotes :
T1004 697-709 NN denotes flow-through
T1005 710-714 IN denotes from
T1006 715-726 NN denotes StrepTactin
T1007 727-732 NN denotes resin
T1008 732-733 -SEMICOLON- denotes ;
T1009 734-738 NN denotes lane
T1010 739-740 CD denotes 3
T1011 740-741 -COLON- denotes :
T1012 742-746 NN denotes wash
T1013 747-751 IN denotes from
T1014 752-763 NN denotes StrepTactin
T1015 764-769 NN denotes resin
T1016 769-770 -SEMICOLON- denotes ;
T1017 771-775 NN denotes lane
T1018 776-777 CD denotes 4
T1019 777-778 -COLON- denotes :
T1020 779-786 NN denotes elution
T1021 787-791 IN denotes from
T1022 792-803 NN denotes StrepTactin
T1023 804-810 NN denotes resin.
T1024 811-812 -LRB- denotes (
T1025 812-813 NN denotes C
T1026 813-814 -RRB- denotes )
T1027 815-829 JJ denotes Negative-stain
T1028 830-832 NN denotes EM
T1029 833-835 NN denotes 2D
T1030 836-841 NN denotes class
T1031 842-850 NNS denotes averages
T1032 851-853 IN denotes of
T1033 854-857 DT denotes the
T1034 858-868 NN denotes SARS-CoV-2
T1035 869-870 NN denotes S
T1036 871-878 NN denotes protein
T1037 880-882 NN denotes 2D
T1038 883-888 NN denotes class
T1039 889-897 NNS denotes averages
T1040 898-900 IN denotes of
T1041 901-904 DT denotes the
T1042 905-915 NN denotes SARS-CoV-2
T1043 916-917 NN denotes S
T1044 918-925 NN denotes protein
T1045 926-929 VBP denotes are
T1046 930-935 VBN denotes shown
T1047 935-936 -COMMA- denotes ,
T1048 937-947 VBG denotes confirming
T1049 948-952 IN denotes that
T1050 953-956 DT denotes the
T1051 957-964 NN denotes protein
T1052 965-971 VBZ denotes adopts
T1053 972-975 DT denotes the
T1054 976-984 JJ denotes trimeric
T1055 985-994 NN denotes prefusion
T1056 995-1007 NN denotes conformation
T1057 1008-1016 VBG denotes matching
T1058 1017-1020 DT denotes the
T1059 1021-1029 NN denotes material
T1060 1030-1034 VBN denotes used
T1061 1035-1037 TO denotes to
T1062 1038-1047 VB denotes determine
T1063 1048-1051 DT denotes the
T1064 1052-1061 NN denotes structure
T1065 1062-1063 -LRB- denotes (
T1066 1063-1064 CD denotes 4
T1067 1064-1065 -RRB- denotes )
T857 0-10 NN denotes Expression
T858 11-14 CC denotes and
T859 15-25 NN denotes validation
T860 26-28 IN denotes of
T861 29-32 DT denotes the
T862 33-43 NN denotes SARS-CoV-2
T863 44-45 NN denotes S
T864 46-58 NN denotes glycoprotein
T865 60-61 -LRB- denotes (
T866 61-62 NN denotes A
T867 62-63 -RRB- denotes )
T868 64-73 JJ denotes Schematic
T869 74-88 NN denotes representation
T870 89-91 IN denotes of
T871 92-95 DT denotes the
T872 96-106 NN denotes SARS-CoV-2
T873 107-108 NN denotes S
T874 109-121 NN denotes glycoprotein
T875 123-126 DT denotes The
T876 127-136 NNS denotes positions
T877 137-139 IN denotes of
T878 140-148 JJ denotes N-linked
T879 149-162 NN denotes glycosylation
T880 163-170 NNS denotes sequons
T881 171-172 -LRB- denotes (
T882 172-179 NN denotes N-X-S/T
T883 179-180 -COMMA- denotes ,
T884 181-186 WRB denotes where
R904 T901 T899 arg2Of residue,","
R905 T901 T900 arg1Of residue,any
R906 T894 T902 arg1Of N,;
R907 T903 T902 arg2Of S,;
R908 T903 T904 arg1Of S,","
R909 T905 T904 arg2Of Ser,","
R910 T902 T906 arg1Of ;,;
R911 T907 T906 arg2Of T,;
R912 T907 T908 arg1Of T,","
R913 T909 T908 arg2Of Thr,","
R914 T907 T910 arg1Of T,;
R915 T911 T910 arg2Of P,;
R916 T911 T912 arg1Of P,","
R917 T913 T912 arg2Of Pro,","
R918 T916 T915 arg1Of domains,Protein
R919 T916 T917 arg1Of domains,are
R920 T918 T917 arg2Of illustrated,are
R921 T916 T918 arg2Of domains,illustrated
R922 T918 T919 arg1Of illustrated,:
R923 T967 T919 arg2Of SDS–polyacrylamide,:
R924 T921 T920 arg1Of domain,N-terminal
R925 T921 T922 arg1Of domain,(
R940 T937 T935 arg3Of ),(
R941 T932 T938 arg1Of ",",","
R942 T940 T938 arg2Of repeat,","
R943 T940 T939 arg1Of repeat,heptad
R944 T940 T941 arg1Of repeat,1
R945 T940 T942 arg1Of repeat,(
R946 T943 T942 arg2Of HR1,(
R947 T944 T942 arg3Of ),(
R948 T938 T945 arg1Of ",",","
R949 T958 T945 arg2Of and,","
R950 T947 T946 arg1Of helix,central
R951 T947 T948 arg1Of helix,(
R952 T949 T948 arg2Of CH,(
R984 T980 T979 arg1Of arrowhead,the
R985 T970 T982 arg2Of analysis,expressed
R986 T982 T983 arg1Of expressed,in
R987 T991 T983 arg2Of cells,in
R988 T991 T984 arg1Of cells,human
R989 T991 T985 arg1Of cells,embryonic
R990 T991 T986 arg1Of cells,kidney
R991 T991 T987 arg1Of cells,(
R1056 T1056 T1052 arg2Of conformation,adopts
R862 T857 T858 arg1Of Expression,and
R863 T859 T858 arg2Of validation,and
R864 T859 T860 arg1Of validation,of
R865 T864 T860 arg2Of glycoprotein,of
R866 T864 T861 arg1Of glycoprotein,the
R867 T864 T862 arg1Of glycoprotein,SARS-CoV-2
R868 T864 T863 arg1Of glycoprotein,S
R869 T869 T865 arg1Of representation,(
R870 T866 T865 arg2Of A,(
R871 T867 T865 arg3Of ),(
R872 T869 T868 arg1Of representation,Schematic
R873 T869 T870 arg1Of representation,of
R874 T874 T870 arg2Of glycoprotein,of
R875 T874 T871 arg1Of glycoprotein,the
R876 T874 T872 arg1Of glycoprotein,SARS-CoV-2
R877 T874 T873 arg1Of glycoprotein,S
R878 T876 T875 arg1Of positions,The
R879 T876 T877 arg1Of positions,of
R880 T882 T877 arg2Of N-X-S/T,of
R881 T882 T878 arg1Of N-X-S/T,N-linked
R882 T882 T879 arg1Of N-X-S/T,glycosylation
R883 T882 T880 arg1Of N-X-S/T,sequons
R884 T882 T881 arg1Of N-X-S/T,(
R885 T882 T883 arg1Of N-X-S/T,","
R886 T882 T884 arg1Of N-X-S/T,where
R887 T890 T884 arg2Of shown,where
R888 T887 T885 arg1Of P,X
R889 T887 T886 arg1Of P,≠
R890 T887 T888 arg1Of P,)
R891 T887 T889 arg1Of P,are
R892 T890 T889 arg2Of shown,are
R893 T887 T890 arg2Of P,shown
R894 T890 T891 arg1Of shown,as
R895 T892 T891 arg2Of branches,as
R896 T876 T893 arg1Of positions,(
R897 T902 T893 arg2Of ;,(
R898 T914 T893 arg3Of ),(
R899 T894 T895 arg1Of N,","
R900 T896 T895 arg2Of Asn,","
R901 T894 T897 arg1Of N,;
R902 T894 T898 arg1Of N,X
R903 T894 T899 arg1Of N,","
R926 T923 T922 arg2Of NTD,(
R927 T924 T922 arg3Of ),(
R928 T921 T925 arg1Of domain,","
R929 T928 T925 arg2Of domain,","
R930 T928 T926 arg1Of domain,receptor
R931 T928 T927 arg1Of domain,binding
R932 T928 T929 arg1Of domain,(
R933 T930 T929 arg2Of RBD,(
R934 T931 T929 arg3Of ),(
R935 T925 T932 arg1Of ",",","
R936 T934 T932 arg2Of peptide,","
R937 T934 T933 arg1Of peptide,fusion
R938 T934 T935 arg1Of peptide,(
R939 T936 T935 arg2Of FP,(
R953 T950 T948 arg3Of ),(
R954 T947 T951 arg1Of helix,","
R955 T953 T951 arg2Of domain,","
R956 T953 T952 arg1Of domain,connector
R957 T953 T954 arg1Of domain,(
R958 T955 T954 arg2Of CD,(
R959 T956 T954 arg3Of ),(
R960 T958 T957 arg1Of and,","
R961 T951 T958 arg1Of ",",and
R962 T960 T958 arg2Of domain,and
R963 T960 T959 arg1Of domain,transmembrane
R964 T960 T961 arg1Of domain,(
R965 T962 T961 arg2Of TM,(
R966 T963 T961 arg3Of ),(
R967 T958 T964 arg1Of and,(
R968 T965 T964 arg2Of B,(
R969 T966 T964 arg3Of ),(
R970 T938 T967 arg1Of ",",SDS–polyacrylamide
R971 T970 T967 arg2Of analysis,SDS–polyacrylamide
R972 T970 T968 arg1Of analysis,gel
R973 T970 T969 arg1Of analysis,electrophoresis
R974 T970 T971 arg1Of analysis,of
R975 T975 T971 arg2Of protein,of
R976 T975 T972 arg1Of protein,the
R977 T975 T973 arg1Of protein,SARS-CoV-2
R978 T975 T974 arg1Of protein,S
R979 T975 T976 arg1Of protein,(
R980 T977 T976 arg2Of indicated,(
R981 T981 T976 arg3Of ),(
R982 T980 T977 arg1Of arrowhead,indicated
R983 T980 T978 arg2Of arrowhead,by
R992 T988 T987 arg2Of HEK,(
R993 T989 T987 arg3Of ),(
R994 T991 T990 arg1Of cells,293F
R995 T992 T993 arg1Of Lane,1
R996 T992 T994 arg1Of Lane,:
R997 T996 T994 arg2Of supernatant,:
R998 T996 T995 arg2Of supernatant,filtered
R999 T996 T997 arg1Of supernatant,from
R1000 T999 T997 arg2Of cells,from
R1001 T999 T998 arg2Of cells,transfected
R1002 T996 T1000 arg1Of supernatant,;
R1003 T1001 T1000 arg2Of lane,;
R1004 T1001 T1002 arg1Of lane,2
R1005 T1001 T1003 arg1Of lane,:
R1006 T1005 T1004 arg1Of from,flow-through
R1007 T1001 T1005 arg1Of lane,from
R1008 T1008 T1005 arg2Of ;,from
R1009 T1007 T1006 arg1Of resin,StrepTactin
R1010 T1007 T1008 arg1Of resin,;
R1011 T1009 T1008 arg2Of lane,;
R1012 T1009 T1010 arg1Of lane,3
R1013 T1001 T1011 arg1Of lane,:
R1014 T1013 T1012 arg1Of from,wash
R1015 T1001 T1013 arg1Of lane,from
R1016 T1015 T1013 arg2Of resin,from
R1017 T1015 T1014 arg1Of resin,StrepTactin
R1018 T1001 T1016 arg1Of lane,;
R1019 T1017 T1016 arg2Of lane,;
R1020 T1017 T1018 arg1Of lane,4
R1021 T1017 T1019 arg1Of lane,:
R1022 T1021 T1020 arg1Of from,elution
R1023 T1017 T1021 arg1Of lane,from
R1024 T1031 T1021 arg2Of averages,from
R1025 T1031 T1022 arg1Of averages,StrepTactin
R1026 T1031 T1023 arg1Of averages,resin.
R1027 T1031 T1024 arg1Of averages,(
R1028 T1025 T1024 arg2Of C,(
R1029 T1026 T1024 arg3Of ),(
R1030 T1031 T1027 arg1Of averages,Negative-stain
R1031 T1031 T1028 arg1Of averages,EM
R1032 T1031 T1029 arg1Of averages,2D
R1033 T1031 T1030 arg1Of averages,class
R1034 T1031 T1032 arg1Of averages,of
R1035 T1036 T1032 arg2Of protein,of
R1036 T1036 T1033 arg1Of protein,the
R1037 T1036 T1034 arg1Of protein,SARS-CoV-2
R1038 T1036 T1035 arg1Of protein,S
R1039 T1039 T1037 arg1Of averages,2D
R1040 T1039 T1038 arg1Of averages,class
R1041 T1039 T1040 arg1Of averages,of
R1042 T1044 T1040 arg2Of protein,of
R1043 T1044 T1041 arg1Of protein,the
R1044 T1044 T1042 arg1Of protein,SARS-CoV-2
R1045 T1044 T1043 arg1Of protein,S
R1046 T1039 T1045 arg1Of averages,are
R1047 T1046 T1045 arg2Of shown,are
R1048 T1039 T1046 arg2Of averages,shown
R1049 T1048 T1046 arg3Of confirming,shown
R1050 T1046 T1047 arg1Of shown,","
R1051 T1039 T1048 arg1Of averages,confirming
R1052 T1052 T1048 arg2Of adopts,confirming
R1053 T1052 T1049 arg1Of adopts,that
R1054 T1051 T1050 arg1Of protein,the
R1055 T1051 T1052 arg1Of protein,adopts
R1057 T1056 T1053 arg1Of conformation,the
R1058 T1056 T1054 arg1Of conformation,trimeric
R1059 T1056 T1055 arg1Of conformation,prefusion
R1060 T1056 T1057 arg1Of conformation,matching
R1061 T1059 T1057 arg2Of material,matching
R1062 T1059 T1058 arg1Of material,the
R1063 T1059 T1060 arg2Of material,used
R1064 T1062 T1060 arg3Of determine,used
R1065 T1062 T1061 arg1Of determine,to
R1066 T1059 T1062 arg1Of material,determine
R1067 T1064 T1062 arg2Of structure,determine
R1068 T1064 T1063 arg1Of structure,the
R1069 T1064 T1065 arg1Of structure,(
R1070 T1066 T1065 arg2Of 4,(
R1071 T1067 T1065 arg3Of ),(

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T31 46-58 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T32 109-121 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T33 266-273 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T34 407-412 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T35 545-552 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 611-617 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T37 629-634 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T38 682-687 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T39 871-878 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T40 918-925 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 957-964 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T31 46-58 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T32 109-121 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T33 220-223 Chemical denotes Asn http://purl.obolibrary.org/obo/CHEBI_17196|http://purl.obolibrary.org/obo/CHEBI_22653|http://purl.obolibrary.org/obo/CHEBI_50347
T36 244-247 Chemical denotes Ser http://purl.obolibrary.org/obo/CHEBI_17115|http://purl.obolibrary.org/obo/CHEBI_29999
T38 252-255 Chemical denotes Thr http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013
T40 260-263 Chemical denotes Pro http://purl.obolibrary.org/obo/CHEBI_50342
T41 266-273 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T42 362-369 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T43 477-480 Chemical denotes SDS http://purl.obolibrary.org/obo/CHEBI_8984
T44 481-495 Chemical denotes polyacrylamide http://purl.obolibrary.org/obo/CHEBI_51135|http://purl.obolibrary.org/obo/CHEBI_53656|http://purl.obolibrary.org/obo/CHEBI_60766
T47 545-552 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T48 871-878 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T49 918-925 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T50 957-964 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T23 33-43 Species denotes SARS-CoV-2 NCBItxid:2697049
T24 96-106 Species denotes SARS-CoV-2 NCBItxid:2697049
T25 532-542 Species denotes SARS-CoV-2 NCBItxid:2697049
T26 595-600 Species denotes human NCBItxid:9606
T27 858-868 Species denotes SARS-CoV-2 NCBItxid:2697049
T28 905-915 Species denotes SARS-CoV-2 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T40 60-122 Sentence denotes (A) Schematic representation of the SARS-CoV-2 S glycoprotein.
T41 123-265 Sentence denotes The positions of N-linked glycosylation sequons (N-X-S/T, where X ≠ P) are shown as branches (N, Asn; X, any residue; S, Ser; T, Thr; P, Pro).
T42 266-635 Sentence denotes Protein domains are illustrated: N-terminal domain (NTD), receptor binding domain (RBD), fusion peptide (FP), heptad repeat 1 (HR1), central helix (CH), connector domain (CD), and transmembrane domain (TM). (B) SDS–polyacrylamide gel electrophoresis analysis of the SARS-CoV-2 S protein (indicated by the arrowhead) expressed in human embryonic kidney (HEK) 293F cells.
T43 636-879 Sentence denotes Lane 1: filtered supernatant from transfected cells; lane 2: flow-through from StrepTactin resin; lane 3: wash from StrepTactin resin; lane 4: elution from StrepTactin resin. (C) Negative-stain EM 2D class averages of the SARS-CoV-2 S protein.
T44 880-1066 Sentence denotes 2D class averages of the SARS-CoV-2 S protein are shown, confirming that the protein adopts the trimeric prefusion conformation matching the material used to determine the structure (4).

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 407-412 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T3 611-617 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 33-43 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T24 96-106 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T25 532-542 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T26 858-868 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T27 905-915 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
151 33-43 Species denotes SARS-CoV-2 Tax:2697049
171 916-925 Gene denotes S protein Gene:43740568
172 869-878 Gene denotes S protein Gene:43740568
173 543-552 Gene denotes S protein Gene:43740568
174 241-242 Gene denotes S Gene:43740568
175 176-177 Gene denotes S Gene:43740568
176 107-108 Gene denotes S Gene:43740568
177 96-106 Species denotes SARS-CoV-2 Tax:2697049
178 532-542 Species denotes SARS-CoV-2 Tax:2697049
179 595-600 Species denotes human Tax:9606
180 858-868 Species denotes SARS-CoV-2 Tax:2697049
181 905-915 Species denotes SARS-CoV-2 Tax:2697049
182 140-141 Chemical denotes N MESH:D009584
183 220-223 Chemical denotes Asn MESH:D001216
184 244-247 Chemical denotes Ser MESH:D012694
185 252-255 Chemical denotes Thr MESH:D013912
186 260-263 Chemical denotes Pro MESH:D011392
187 477-495 Chemical denotes SDS–polyacrylamide
188 601-617 Disease denotes embryonic kidney MESH:D007674
189 619-628 CellLine denotes HEK) 293F CVCL:6642

LitCovid-sample-UniProt

Id Subject Object Predicate Lexical cue uniprot_id
T410 44-58 Protein denotes S glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T509 107-121 Protein denotes S glycoprotein https://www.uniprot.org/uniprot/Q9QAS2|https://www.uniprot.org/uniprot/Q9QAR5|https://www.uniprot.org/uniprot/Q9QAQ8|https://www.uniprot.org/uniprot/Q9IW04|https://www.uniprot.org/uniprot/Q9IKD1|https://www.uniprot.org/uniprot/Q990M4|https://www.uniprot.org/uniprot/Q990M3|https://www.uniprot.org/uniprot/Q990M2|https://www.uniprot.org/uniprot/Q990M1|https://www.uniprot.org/uniprot/Q91AV1|https://www.uniprot.org/uniprot/Q91A26|https://www.uniprot.org/uniprot/Q8V436|https://www.uniprot.org/uniprot/Q8JSP8|https://www.uniprot.org/uniprot/Q8BB25|https://www.uniprot.org/uniprot/Q86623|https://www.uniprot.org/uniprot/Q85088|https://www.uniprot.org/uniprot/Q85087|https://www.uniprot.org/uniprot/Q80BV6|https://www.uniprot.org/uniprot/Q7TFB1|https://www.uniprot.org/uniprot/Q7TFA2|https://www.uniprot.org/uniprot/Q7TA19|https://www.uniprot.org/uniprot/Q7T6T3|https://www.uniprot.org/uniprot/Q7T696|https://www.uniprot.org/uniprot/Q77NC4|https://www.uniprot.org/uniprot/Q6TNF9|https://www.uniprot.org/uniprot/Q6R1L7|https://www.uniprot.org/uniprot/Q6QU82|https://www.uniprot.org/uniprot/Q6Q1S2|https://www.uniprot.org/uniprot/Q696Q6|https://www.uniprot.org/uniprot/Q66291|https://www.uniprot.org/uniprot/Q66290|https://www.uniprot.org/uniprot/Q66199|https://www.uniprot.org/uniprot/Q66177|https://www.uniprot.org/uniprot/Q66176|https://www.uniprot.org/uniprot/Q66174|https://www.uniprot.org/uniprot/Q65984|https://www.uniprot.org/uniprot/Q5MQD0|https://www.uniprot.org/uniprot/Q5I5X9|https://www.uniprot.org/uniprot/Q5DIY0|https://www.uniprot.org/uniprot/Q5DIX9|https://www.uniprot.org/uniprot/Q5DIX8|https://www.uniprot.org/uniprot/Q5DIX7|https://www.uniprot.org/uniprot/Q52PA3|https://www.uniprot.org/uniprot/Q4ZJS1|https://www.uniprot.org/uniprot/Q4U5G0|https://www.uniprot.org/uniprot/Q3T8J0|https://www.uniprot.org/uniprot/Q3LZX1|https://www.uniprot.org/uniprot/Q3I5J5|https://www.uniprot.org/uniprot/Q14EB0|https://www.uniprot.org/uniprot/Q0ZME7|https://www.uniprot.org/uniprot/Q0Q4F2|https://www.uniprot.org/uniprot/Q0Q475|https://www.uniprot.org/uniprot/Q0Q466|https://www.uniprot.org/uniprot/Q0GNB8|https://www.uniprot.org/uniprot/Q02385|https://www.uniprot.org/uniprot/Q02167|https://www.uniprot.org/uniprot/Q01977|https://www.uniprot.org/uniprot/Q008X4|https://www.uniprot.org/uniprot/P89344|https://www.uniprot.org/uniprot/P89343|https://www.uniprot.org/uniprot/P89342|https://www.uniprot.org/uniprot/P59594|https://www.uniprot.org/uniprot/P36334|https://www.uniprot.org/uniprot/P36300|https://www.uniprot.org/uniprot/P33470|https://www.uniprot.org/uniprot/P30208|https://www.uniprot.org/uniprot/P30207|https://www.uniprot.org/uniprot/P30206|https://www.uniprot.org/uniprot/P30019|https://www.uniprot.org/uniprot/P27655|https://www.uniprot.org/uniprot/P25194|https://www.uniprot.org/uniprot/P25193|https://www.uniprot.org/uniprot/P25192|https://www.uniprot.org/uniprot/P25191|https://www.uniprot.org/uniprot/P25190|https://www.uniprot.org/uniprot/P24413|https://www.uniprot.org/uniprot/P23052|https://www.uniprot.org/uniprot/P22432|https://www.uniprot.org/uniprot/P18450|https://www.uniprot.org/uniprot/P17662|https://www.uniprot.org/uniprot/P15777|https://www.uniprot.org/uniprot/P15423|https://www.uniprot.org/uniprot/P12722|https://www.uniprot.org/uniprot/P12651|https://www.uniprot.org/uniprot/P12650|https://www.uniprot.org/uniprot/P11225|https://www.uniprot.org/uniprot/P11224|https://www.uniprot.org/uniprot/P11223|https://www.uniprot.org/uniprot/P10033|https://www.uniprot.org/uniprot/P0DTC2|https://www.uniprot.org/uniprot/P07946|https://www.uniprot.org/uniprot/P05135|https://www.uniprot.org/uniprot/P05134|https://www.uniprot.org/uniprot/O90304|https://www.uniprot.org/uniprot/O39227|https://www.uniprot.org/uniprot/K9N5Q8|https://www.uniprot.org/uniprot/A3EXG6|https://www.uniprot.org/uniprot/A3EXD0|https://www.uniprot.org/uniprot/A3EX94
T608 349-352 Protein denotes RBD https://www.uniprot.org/uniprot/Q63492|https://www.uniprot.org/uniprot/Q63491|https://www.uniprot.org/uniprot/Q62815|https://www.uniprot.org/uniprot/Q62691|https://www.uniprot.org/uniprot/Q01542|https://www.uniprot.org/uniprot/P27732|https://www.uniprot.org/uniprot/O09024|https://www.uniprot.org/uniprot/O09023|https://www.uniprot.org/uniprot/O09022
T617 543-552 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T650 601-610 Protein denotes embryonic https://www.uniprot.org/uniprot/P02301
T651 619-622 Protein denotes HEK https://www.uniprot.org/uniprot/Q9H2V4|https://www.uniprot.org/uniprot/Q9H2V3|https://www.uniprot.org/uniprot/P29320
T654 869-878 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9
T687 916-925 Protein denotes S protein https://www.uniprot.org/uniprot/Q9UIP0|https://www.uniprot.org/uniprot/Q9UIN9|https://www.uniprot.org/uniprot/Q9UIN8|https://www.uniprot.org/uniprot/Q9UIN7|https://www.uniprot.org/uniprot/Q9UIN6|https://www.uniprot.org/uniprot/Q9UBH8|https://www.uniprot.org/uniprot/Q9NRH8|https://www.uniprot.org/uniprot/Q9NRH7|https://www.uniprot.org/uniprot/Q9NRH6|https://www.uniprot.org/uniprot/Q9NRH5|https://www.uniprot.org/uniprot/Q9NRH4|https://www.uniprot.org/uniprot/Q9NPG5|https://www.uniprot.org/uniprot/Q9NPE0|https://www.uniprot.org/uniprot/Q9NP52|https://www.uniprot.org/uniprot/Q95IF9|https://www.uniprot.org/uniprot/Q8N5P3|https://www.uniprot.org/uniprot/Q8IZU6|https://www.uniprot.org/uniprot/Q8IZU5|https://www.uniprot.org/uniprot/Q8IZU4|https://www.uniprot.org/uniprot/Q86Z04|https://www.uniprot.org/uniprot/Q7YR44|https://www.uniprot.org/uniprot/Q7LA71|https://www.uniprot.org/uniprot/Q7LA70|https://www.uniprot.org/uniprot/Q5STD2|https://www.uniprot.org/uniprot/Q5SQ85|https://www.uniprot.org/uniprot/Q1XI16|https://www.uniprot.org/uniprot/Q1XI12|https://www.uniprot.org/uniprot/Q15517|https://www.uniprot.org/uniprot/O43509|https://www.uniprot.org/uniprot/O19084|https://www.uniprot.org/uniprot/B0UYZ7|https://www.uniprot.org/uniprot/B0S7V2|https://www.uniprot.org/uniprot/A5A6L9

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T1 611-617 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T24 149-162 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T22 149-162 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T24 140-162 http://purl.obolibrary.org/obo/GO_0006487 denotes N-linked glycosylation
T25 149-162 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation

LitCovid-sample-Glycan

Id Subject Object Predicate Lexical cue
T1 252-255 https://glytoucan.org/Structures/Glycans/G69371PB denotes Thr
T2 252-255 https://glytoucan.org/Structures/Glycans/G00134PL denotes Thr
T3 252-255 https://glytoucan.org/Structures/Glycans/G52865ZM denotes Thr
T4 252-255 https://glytoucan.org/Structures/Glycans/G50601AY denotes Thr
T5 252-255 https://glytoucan.org/Structures/Glycans/G27898GL denotes Thr
T6 252-255 https://glytoucan.org/Structures/Glycans/G90753WM denotes Thr
T7 252-255 https://glytoucan.org/Structures/Glycans/G57814GP denotes Thr
T8 252-255 https://glytoucan.org/Structures/Glycans/G42918SL denotes Thr
T9 252-255 https://glytoucan.org/Structures/Glycans/G81521LC denotes Thr
T10 252-255 https://glytoucan.org/Structures/Glycans/G19289PT denotes Thr
T11 252-255 https://glytoucan.org/Structures/Glycans/G23779KC denotes Thr
T12 252-255 https://glytoucan.org/Structures/Glycans/G94729UX denotes Thr
T13 252-255 https://glytoucan.org/Structures/Glycans/G49708JS denotes Thr
T14 252-255 https://glytoucan.org/Structures/Glycans/G60349YI denotes Thr
T15 252-255 https://glytoucan.org/Structures/Glycans/G63317ON denotes Thr
T16 252-255 https://glytoucan.org/Structures/Glycans/G71284FA denotes Thr
T17 252-255 https://glytoucan.org/Structures/Glycans/G42091PK denotes Thr
T18 252-255 https://glytoucan.org/Structures/Glycans/G39722QK denotes Thr
T19 252-255 https://glytoucan.org/Structures/Glycans/G76637LW denotes Thr
T20 252-255 https://glytoucan.org/Structures/Glycans/G46130CG denotes Thr
T21 252-255 https://glytoucan.org/Structures/Glycans/G05333AM denotes Thr
T22 252-255 https://glytoucan.org/Structures/Glycans/G77428YW denotes Thr
T23 252-255 https://glytoucan.org/Structures/Glycans/G15142RK denotes Thr
T24 252-255 https://glytoucan.org/Structures/Glycans/G06824UZ denotes Thr
T25 252-255 https://glytoucan.org/Structures/Glycans/G48723MN denotes Thr
T26 252-255 https://glytoucan.org/Structures/Glycans/G35093GE denotes Thr
T27 252-255 https://glytoucan.org/Structures/Glycans/G34845TQ denotes Thr
T28 252-255 https://glytoucan.org/Structures/Glycans/G71815PL denotes Thr
T29 252-255 https://glytoucan.org/Structures/Glycans/G97173UR denotes Thr
T30 252-255 https://glytoucan.org/Structures/Glycans/G53453JD denotes Thr
T31 252-255 https://glytoucan.org/Structures/Glycans/G81407LL denotes Thr
T32 252-255 https://glytoucan.org/Structures/Glycans/G46430YF denotes Thr

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T40 60-122 Sentence denotes (A) Schematic representation of the SARS-CoV-2 S glycoprotein.
T41 123-265 Sentence denotes The positions of N-linked glycosylation sequons (N-X-S/T, where X ≠ P) are shown as branches (N, Asn; X, any residue; S, Ser; T, Thr; P, Pro).
T42 266-635 Sentence denotes Protein domains are illustrated: N-terminal domain (NTD), receptor binding domain (RBD), fusion peptide (FP), heptad repeat 1 (HR1), central helix (CH), connector domain (CD), and transmembrane domain (TM). (B) SDS–polyacrylamide gel electrophoresis analysis of the SARS-CoV-2 S protein (indicated by the arrowhead) expressed in human embryonic kidney (HEK) 293F cells.
T43 636-879 Sentence denotes Lane 1: filtered supernatant from transfected cells; lane 2: flow-through from StrepTactin resin; lane 3: wash from StrepTactin resin; lane 4: elution from StrepTactin resin. (C) Negative-stain EM 2D class averages of the SARS-CoV-2 S protein.
T44 880-1066 Sentence denotes 2D class averages of the SARS-CoV-2 S protein are shown, confirming that the protein adopts the trimeric prefusion conformation matching the material used to determine the structure (4).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
151 33-43 Species denotes SARS-CoV-2 Tax:2697049
171 916-925 Gene denotes S protein Gene:43740568
172 869-878 Gene denotes S protein Gene:43740568
173 543-552 Gene denotes S protein Gene:43740568
174 241-242 Gene denotes S Gene:43740568
175 176-177 Gene denotes S Gene:43740568
176 107-108 Gene denotes S Gene:43740568
177 96-106 Species denotes SARS-CoV-2 Tax:2697049
178 532-542 Species denotes SARS-CoV-2 Tax:2697049
179 595-600 Species denotes human Tax:9606
180 858-868 Species denotes SARS-CoV-2 Tax:2697049
181 905-915 Species denotes SARS-CoV-2 Tax:2697049
182 140-141 Chemical denotes N MESH:D009584
183 220-223 Chemical denotes Asn MESH:D001216
184 244-247 Chemical denotes Ser MESH:D012694
185 252-255 Chemical denotes Thr MESH:D013912
186 260-263 Chemical denotes Pro MESH:D011392
187 477-495 Chemical denotes SDS–polyacrylamide
188 601-617 Disease denotes embryonic kidney MESH:D007674
189 619-628 CellLine denotes HEK) 293F CVCL:6642