PMC:7162774 / 3555-4006
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 117 | 4-11 | Species | denotes | patient | Tax:9606 |
| 118 | 86-102 | Species | denotes | Escherichia coli | Tax:562 |
| 119 | 407-414 | Species | denotes | patient | Tax:9606 |
| 120 | 55-67 | Disease | denotes | septic shock | MESH:D012772 |
| 121 | 129-139 | Disease | denotes | bacteremia | MESH:D016470 |
| 122 | 141-159 | Disease | denotes | hyperbilirubinemia | MESH:D006932 |
| 123 | 173-197 | Disease | denotes | acalculous cholecystitis | MESH:D042101 |
| 124 | 232-247 | Disease | denotes | cholecystostomy | |
| 125 | 253-276 | Disease | denotes | acute blood loss anemia | MESH:D006473 |
| 126 | 290-312 | Disease | denotes | gastrointestinal bleed | MESH:D006471 |
| 127 | 382-401 | Disease | denotes | respiratory failure | MESH:D012131 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T44 | 86-102 | NCBITaxon:562 | denotes | Escherichia coli |
| T45 | 107-120 | NCBITaxon:1578 | denotes | Lactobacillus |
| T46 | 121-128 | NCBITaxon:species | denotes | species |
| T47 | 259-264 | UBERON:0000178 | denotes | blood |
| T48 | 290-306 | UBERON:0005409 | denotes | gastrointestinal |
| T49 | 323-328 | UBERON:0000178 | denotes | blood |
| T50 | 382-393 | UBERON:0001004 | denotes | respiratory |
| T84632 | 86-102 | NCBITaxon:562 | denotes | Escherichia coli |
| T83692 | 107-120 | NCBITaxon:1578 | denotes | Lactobacillus |
| T69565 | 121-128 | NCBITaxon:species | denotes | species |
| T75923 | 259-264 | UBERON:0000178 | denotes | blood |
| T14243 | 290-306 | UBERON:0005409 | denotes | gastrointestinal |
| T28472 | 323-328 | UBERON:0000178 | denotes | blood |
| T62212 | 382-393 | UBERON:0001004 | denotes | respiratory |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T11 | 259-264 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T12 | 323-328 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T11 | 259-264 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T12 | 323-328 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T28 | 129-139 | Disease | denotes | bacteremia | http://purl.obolibrary.org/obo/MONDO_0005229 |
| T29 | 141-159 | Disease | denotes | hyperbilirubinemia | http://purl.obolibrary.org/obo/MONDO_0002408|http://purl.obolibrary.org/obo/MONDO_0024288 |
| T31 | 173-197 | Disease | denotes | acalculous cholecystitis | http://purl.obolibrary.org/obo/MONDO_0002155|http://purl.obolibrary.org/obo/MONDO_0006633 |
| T33 | 270-276 | Disease | denotes | anemia | http://purl.obolibrary.org/obo/MONDO_0002280 |
| T34 | 382-401 | Disease | denotes | respiratory failure | http://purl.obolibrary.org/obo/MONDO_0021113 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T45 | 259-264 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T46 | 259-264 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T47 | 323-328 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T48 | 323-328 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25 | 0-341 | Sentence | denotes | The patient's clinical course was later complicated by septic shock in the setting of Escherichia coli and Lactobacillus species bacteremia, hyperbilirubinemia secondary to acalculous cholecystitis with requirement for percutaneous cholecystostomy, and acute blood loss anemia secondary to gastrointestinal bleed requiring blood transfusion. |
| T26 | 342-451 | Sentence | denotes | Owing to prolonged ventilator-dependent respiratory failure, the patient underwent placement of tracheostomy. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T26 | 62-67 | Phenotype | denotes | shock | http://purl.obolibrary.org/obo/HP_0031273 |
| T27 | 129-139 | Phenotype | denotes | bacteremia | http://purl.obolibrary.org/obo/HP_0031864 |
| T28 | 141-159 | Phenotype | denotes | hyperbilirubinemia | http://purl.obolibrary.org/obo/HP_0002904 |
| T29 | 184-197 | Phenotype | denotes | cholecystitis | http://purl.obolibrary.org/obo/HP_0001082 |
| T30 | 270-276 | Phenotype | denotes | anemia | http://purl.obolibrary.org/obo/HP_0001903 |
| T31 | 290-312 | Phenotype | denotes | gastrointestinal bleed | http://purl.obolibrary.org/obo/HP_0002239 |
| T32 | 382-401 | Phenotype | denotes | respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |