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PMC:7161517 / 26727-27422 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T149 159-166 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T150 195-202 Body_part denotes cytosol http://purl.org/sig/ont/fma/fma66836
T151 210-217 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T152 327-333 Body_part denotes serine http://purl.org/sig/ont/fma/fma82764
T153 552-562 Body_part denotes calmodulin http://purl.org/sig/ont/fma/fma62343

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T136 32-40 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T137 52-99 Disease denotes Severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T138 101-109 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T139 273-278 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T140 505-513 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T240 384-386 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T241 391-393 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T242 391-393 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T243 403-405 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T244 403-405 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T245 413-420 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T246 438-446 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T295 159-166 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T296 210-217 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T297 228-232 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T298 327-333 Chemical denotes serine http://purl.obolibrary.org/obo/CHEBI_17822
T299 391-393 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T300 403-405 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T301 413-420 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T302 563-573 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T67 279-287 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T68 279-287 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T69 279-287 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T70 279-287 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T71 368-377 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T72 485-496 http://purl.obolibrary.org/obo/GO_0006897 denotes endocytosis
T73 585-604 http://purl.obolibrary.org/obo/GO_0006509 denotes ectodomain cleavage

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T165 52-167 Sentence denotes Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) binds to the catalytic site of ACE2 via its S protein.
T166 168-402 Sentence denotes To gain access to the host cytosol, the S protein undergoes acid dependent proteolytic cleavage by ACE2, tumor necrosis factor (TNF)-α, transmembrane protease serine 2 (TMPRRS2), which results in the formation of an S1 and S2 subunit.
T167 403-516 Sentence denotes S2 fusion peptide inserts into the membrane, which allows for clatherin-dependent endocytosis of ACE2-SARS-CoV-2.
T168 517-613 Sentence denotes Viral binding stimulates TNF-α and calmodulin inhibitors to promote ectodomain cleavage of ACE2.
T169 614-695 Sentence denotes ADAM 17 = disintegrin and metalloprotease 17; other abbreviations as in Figure 1.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T41 273-278 Phenotype denotes tumor http://purl.obolibrary.org/obo/HP_0002664

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T854 32-42 SP_7 denotes SARS-CoV-2
T855 47-58 G_3;PG_10;SP_7 denotes ACE2 Severe
T856 59-64 SP_7 denotes acute
T857 65-76 SP_7;GO:0045333;UBERON:0001004 denotes respiratory
T858 77-99 SP_7 denotes syndrome coronavirus 2
T859 101-111 SP_7 denotes SARS-CoV-2
T860 144-148 G_3;PG_10;PR:000003622 denotes ACE2
T861 157-166 PG_1 denotes S protein
T862 190-202 GO:0044164 denotes host cytosol
T863 208-217 PG_1 denotes S protein
T864 228-232 CHEBI:37527;CHEBI:37527 denotes acid
T865 233-242 GO:0010498 denotes dependent
T866 243-254 GO:0006508 denotes proteolytic
T867 255-263 MOP:0000780 denotes cleavage
T868 267-271 G_3;PG_10;PR:000003622 denotes ACE2
T869 296-299 PR:000000134 denotes TNF
T870 304-317 GO:0016020;PG_8 denotes transmembrane
T871 318-335 PG_8 denotes protease serine 2
T872 421-428 SO:0000667 denotes inserts
T873 438-446 GO:0016020 denotes membrane
T874 465-484 GO:0017156 denotes clatherin-dependent
T875 485-496 GO:0006897 denotes endocytosis
T876 500-504 G_3;PG_10;PR:000003622 denotes ACE2
T877 505-515 SP_7 denotes SARS-CoV-2
T878 542-547 PR:000000134 denotes TNF-α
T879 552-562 PR:000004978 denotes calmodulin
T880 563-573 CHEBI:35222;CHEBI:35222 denotes inhibitors
T881 596-604 MOP:0000780 denotes cleavage
T882 608-612 PR:000003622;G_3;PG_10 denotes ACE2
T883 614-621 PR:000001279 denotes ADAM 17
T886 52-64 SP_7 denotes Severe acute
T884 32-42 SP_7 denotes SARS-CoV-2
T885 47-51 G_3;PG_10;PR:000003622 denotes ACE2
T887 65-76 SP_7;UBERON:0001004;GO:0045333 denotes respiratory
T888 77-99 SP_7 denotes syndrome coronavirus 2
T889 101-111 SP_7 denotes SARS-CoV-2
T890 144-148 G_3;PG_10;PR:000003622 denotes ACE2
T891 157-166 PG_1 denotes S protein
T892 190-202 GO:0044164 denotes host cytosol
T893 208-217 PG_1 denotes S protein
T894 228-232 CHEBI:37527;CHEBI:37527 denotes acid
T895 233-242 GO:0010498 denotes dependent
T896 243-254 GO:0006508 denotes proteolytic
T897 255-263 MOP:0000780 denotes cleavage
T898 267-271 G_3;PG_10;PR:000003622 denotes ACE2
T899 296-299 PR:000000134 denotes TNF
T900 304-317 GO:0016020;PG_8 denotes transmembrane
T901 318-335 PG_8 denotes protease serine 2
T902 421-428 SO:0000667 denotes inserts
T903 438-446 GO:0016020 denotes membrane
T904 465-484 GO:0017156 denotes clatherin-dependent
T905 485-496 GO:0006897 denotes endocytosis
T906 500-504 G_3;PG_10;PR:000003622 denotes ACE2
T907 505-515 SP_7 denotes SARS-CoV-2
T908 542-547 PR:000000134 denotes TNF-α
T909 552-562 PR:000004978 denotes calmodulin
T910 563-573 CHEBI:35222;CHEBI:35222 denotes inhibitors
T911 596-604 MOP:0000780 denotes cleavage
T912 608-612 PR:000003622;G_3;PG_10 denotes ACE2
T913 614-621 PR:000001279 denotes ADAM 17

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1125 32-42 Species denotes SARS-CoV-2 Tax:2697049
1141 144-148 Gene denotes ACE2 Gene:59272
1142 267-271 Gene denotes ACE2 Gene:59272
1143 273-302 Gene denotes tumor necrosis factor (TNF)-α Gene:7124
1144 304-335 Gene denotes transmembrane protease serine 2 Gene:7113
1145 500-504 Gene denotes ACE2 Gene:59272
1146 542-547 Gene denotes TNF-α Gene:7124
1147 552-562 Gene denotes calmodulin Gene:801
1148 608-612 Gene denotes ACE2 Gene:59272
1149 614-621 Gene denotes ADAM 17 Gene:6868
1150 208-209 Gene denotes S Gene:43740568
1151 157-158 Gene denotes S Gene:43740568
1152 52-99 Species denotes Severe acute respiratory syndrome coronavirus 2 Tax:2697049
1153 101-111 Species denotes SARS-CoV-2 Tax:2697049
1154 505-515 Species denotes SARS-CoV-2 Tax:2697049
1155 465-474 Chemical denotes clatherin