PMC:7161517 / 26727-27422
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T149 | 159-166 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T150 | 195-202 | Body_part | denotes | cytosol | http://purl.org/sig/ont/fma/fma66836 |
T151 | 210-217 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T152 | 327-333 | Body_part | denotes | serine | http://purl.org/sig/ont/fma/fma82764 |
T153 | 552-562 | Body_part | denotes | calmodulin | http://purl.org/sig/ont/fma/fma62343 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T136 | 32-40 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T137 | 52-99 | Disease | denotes | Severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T138 | 101-109 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T139 | 273-278 | Disease | denotes | tumor | http://purl.obolibrary.org/obo/MONDO_0005070 |
T140 | 505-513 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T240 | 384-386 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T241 | 391-393 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T242 | 391-393 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T243 | 403-405 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T244 | 403-405 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T245 | 413-420 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptide |
T246 | 438-446 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T295 | 159-166 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T296 | 210-217 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T297 | 228-232 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T298 | 327-333 | Chemical | denotes | serine | http://purl.obolibrary.org/obo/CHEBI_17822 |
T299 | 391-393 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T300 | 403-405 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T301 | 413-420 | Chemical | denotes | peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
T302 | 563-573 | Chemical | denotes | inhibitors | http://purl.obolibrary.org/obo/CHEBI_35222 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T67 | 279-287 | http://purl.obolibrary.org/obo/GO_0070265 | denotes | necrosis |
T68 | 279-287 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | necrosis |
T69 | 279-287 | http://purl.obolibrary.org/obo/GO_0008219 | denotes | necrosis |
T70 | 279-287 | http://purl.obolibrary.org/obo/GO_0001906 | denotes | necrosis |
T71 | 368-377 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
T72 | 485-496 | http://purl.obolibrary.org/obo/GO_0006897 | denotes | endocytosis |
T73 | 585-604 | http://purl.obolibrary.org/obo/GO_0006509 | denotes | ectodomain cleavage |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T165 | 52-167 | Sentence | denotes | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) binds to the catalytic site of ACE2 via its S protein. |
T166 | 168-402 | Sentence | denotes | To gain access to the host cytosol, the S protein undergoes acid dependent proteolytic cleavage by ACE2, tumor necrosis factor (TNF)-α, transmembrane protease serine 2 (TMPRRS2), which results in the formation of an S1 and S2 subunit. |
T167 | 403-516 | Sentence | denotes | S2 fusion peptide inserts into the membrane, which allows for clatherin-dependent endocytosis of ACE2-SARS-CoV-2. |
T168 | 517-613 | Sentence | denotes | Viral binding stimulates TNF-α and calmodulin inhibitors to promote ectodomain cleavage of ACE2. |
T169 | 614-695 | Sentence | denotes | ADAM 17 = disintegrin and metalloprotease 17; other abbreviations as in Figure 1. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T41 | 273-278 | Phenotype | denotes | tumor | http://purl.obolibrary.org/obo/HP_0002664 |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T854 | 32-42 | SP_7 | denotes | SARS-CoV-2 |
T855 | 47-58 | G_3;PG_10;SP_7 | denotes | ACE2 Severe |
T856 | 59-64 | SP_7 | denotes | acute |
T857 | 65-76 | SP_7;GO:0045333;UBERON:0001004 | denotes | respiratory |
T858 | 77-99 | SP_7 | denotes | syndrome coronavirus 2 |
T859 | 101-111 | SP_7 | denotes | SARS-CoV-2 |
T860 | 144-148 | G_3;PG_10;PR:000003622 | denotes | ACE2 |
T861 | 157-166 | PG_1 | denotes | S protein |
T862 | 190-202 | GO:0044164 | denotes | host cytosol |
T863 | 208-217 | PG_1 | denotes | S protein |
T864 | 228-232 | CHEBI:37527;CHEBI:37527 | denotes | acid |
T865 | 233-242 | GO:0010498 | denotes | dependent |
T866 | 243-254 | GO:0006508 | denotes | proteolytic |
T867 | 255-263 | MOP:0000780 | denotes | cleavage |
T868 | 267-271 | G_3;PG_10;PR:000003622 | denotes | ACE2 |
T869 | 296-299 | PR:000000134 | denotes | TNF |
T870 | 304-317 | GO:0016020;PG_8 | denotes | transmembrane |
T871 | 318-335 | PG_8 | denotes | protease serine 2 |
T872 | 421-428 | SO:0000667 | denotes | inserts |
T873 | 438-446 | GO:0016020 | denotes | membrane |
T874 | 465-484 | GO:0017156 | denotes | clatherin-dependent |
T875 | 485-496 | GO:0006897 | denotes | endocytosis |
T876 | 500-504 | G_3;PG_10;PR:000003622 | denotes | ACE2 |
T877 | 505-515 | SP_7 | denotes | SARS-CoV-2 |
T878 | 542-547 | PR:000000134 | denotes | TNF-α |
T879 | 552-562 | PR:000004978 | denotes | calmodulin |
T880 | 563-573 | CHEBI:35222;CHEBI:35222 | denotes | inhibitors |
T881 | 596-604 | MOP:0000780 | denotes | cleavage |
T882 | 608-612 | PR:000003622;G_3;PG_10 | denotes | ACE2 |
T883 | 614-621 | PR:000001279 | denotes | ADAM 17 |
T886 | 52-64 | SP_7 | denotes | Severe acute |
T884 | 32-42 | SP_7 | denotes | SARS-CoV-2 |
T885 | 47-51 | G_3;PG_10;PR:000003622 | denotes | ACE2 |
T887 | 65-76 | SP_7;UBERON:0001004;GO:0045333 | denotes | respiratory |
T888 | 77-99 | SP_7 | denotes | syndrome coronavirus 2 |
T889 | 101-111 | SP_7 | denotes | SARS-CoV-2 |
T890 | 144-148 | G_3;PG_10;PR:000003622 | denotes | ACE2 |
T891 | 157-166 | PG_1 | denotes | S protein |
T892 | 190-202 | GO:0044164 | denotes | host cytosol |
T893 | 208-217 | PG_1 | denotes | S protein |
T894 | 228-232 | CHEBI:37527;CHEBI:37527 | denotes | acid |
T895 | 233-242 | GO:0010498 | denotes | dependent |
T896 | 243-254 | GO:0006508 | denotes | proteolytic |
T897 | 255-263 | MOP:0000780 | denotes | cleavage |
T898 | 267-271 | G_3;PG_10;PR:000003622 | denotes | ACE2 |
T899 | 296-299 | PR:000000134 | denotes | TNF |
T900 | 304-317 | GO:0016020;PG_8 | denotes | transmembrane |
T901 | 318-335 | PG_8 | denotes | protease serine 2 |
T902 | 421-428 | SO:0000667 | denotes | inserts |
T903 | 438-446 | GO:0016020 | denotes | membrane |
T904 | 465-484 | GO:0017156 | denotes | clatherin-dependent |
T905 | 485-496 | GO:0006897 | denotes | endocytosis |
T906 | 500-504 | G_3;PG_10;PR:000003622 | denotes | ACE2 |
T907 | 505-515 | SP_7 | denotes | SARS-CoV-2 |
T908 | 542-547 | PR:000000134 | denotes | TNF-α |
T909 | 552-562 | PR:000004978 | denotes | calmodulin |
T910 | 563-573 | CHEBI:35222;CHEBI:35222 | denotes | inhibitors |
T911 | 596-604 | MOP:0000780 | denotes | cleavage |
T912 | 608-612 | PR:000003622;G_3;PG_10 | denotes | ACE2 |
T913 | 614-621 | PR:000001279 | denotes | ADAM 17 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
1125 | 32-42 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
1141 | 144-148 | Gene | denotes | ACE2 | Gene:59272 |
1142 | 267-271 | Gene | denotes | ACE2 | Gene:59272 |
1143 | 273-302 | Gene | denotes | tumor necrosis factor (TNF)-α | Gene:7124 |
1144 | 304-335 | Gene | denotes | transmembrane protease serine 2 | Gene:7113 |
1145 | 500-504 | Gene | denotes | ACE2 | Gene:59272 |
1146 | 542-547 | Gene | denotes | TNF-α | Gene:7124 |
1147 | 552-562 | Gene | denotes | calmodulin | Gene:801 |
1148 | 608-612 | Gene | denotes | ACE2 | Gene:59272 |
1149 | 614-621 | Gene | denotes | ADAM 17 | Gene:6868 |
1150 | 208-209 | Gene | denotes | S | Gene:43740568 |
1151 | 157-158 | Gene | denotes | S | Gene:43740568 |
1152 | 52-99 | Species | denotes | Severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
1153 | 101-111 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
1154 | 505-515 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
1155 | 465-474 | Chemical | denotes | clatherin |