PMC:7060195 / 446-1642
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 30 | 15-37 | Species | denotes | 2019-novel coronavirus | Tax:2697049 |
| 31 | 39-49 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 32 | 475-481 | Species | denotes | people | Tax:9606 |
| 33 | 531-536 | Species | denotes | human | Tax:9606 |
| 34 | 540-545 | Species | denotes | human | Tax:9606 |
| 35 | 794-804 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 36 | 940-948 | Species | denotes | patients | Tax:9606 |
| 37 | 1149-1159 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 38 | 72-81 | Disease | denotes | pneumonia | MESH:D011014 |
| 39 | 83-91 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 40 | 391-412 | Disease | denotes | SARS-CoV-2 infections | MESH:C000657245 |
| 41 | 487-491 | Disease | denotes | died | MESH:D003643 |
| 42 | 503-511 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 43 | 669-678 | Disease | denotes | pneumonia | MESH:D011014 |
| 44 | 862-867 | Disease | denotes | Fever | MESH:D005334 |
| 45 | 869-878 | Disease | denotes | dry cough | MESH:D003371 |
| 46 | 884-891 | Disease | denotes | fatigue | MESH:D005221 |
| 47 | 924-932 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 48 | 954-965 | Disease | denotes | lymphopenia | MESH:D008231 |
| 49 | 1119-1132 | Disease | denotes | viral disease | MESH:D001102 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 1012-1017 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 1012-1017 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T2 | 72-81 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T3 | 669-678 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T4 | 862-867 | Phenotype | denotes | Fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T5 | 869-878 | Phenotype | denotes | dry cough | http://purl.obolibrary.org/obo/HP_0031246 |
| T6 | 884-891 | Phenotype | denotes | fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
| T7 | 954-965 | Phenotype | denotes | lymphopenia | http://purl.obolibrary.org/obo/HP_0001888 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T6 | 39-47 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T7 | 72-81 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T8 | 83-91 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T9 | 391-399 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T10 | 402-412 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T11 | 503-511 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T12 | 669-678 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T13 | 794-802 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T14 | 954-965 | Disease | denotes | lymphopenia | http://purl.obolibrary.org/obo/MONDO_0003783 |
| T15 | 1119-1132 | Disease | denotes | viral disease | http://purl.obolibrary.org/obo/MONDO_0005108 |
| T16 | 1149-1157 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 93-96 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T5 | 140-143 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T6 | 362-363 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T7 | 528-536 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | by human |
| T8 | 540-545 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T9 | 564-565 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T10 | 853-854 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T11 | 1012-1017 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T12 | 1104-1105 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T3 | 1043-1052 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 0-187 | Sentence | denotes | An outbreak of 2019-novel coronavirus (SARS-CoV-2) that causes atypical pneumonia (COVID-19) has raged in China since mid-December 2019 and has spread to 26 countries (February 20, 2020). |
| T6 | 188-361 | Sentence | denotes | The epidemic was identified by the first four cases confirmed on December 29, 2019 and was traced to the Huanan Seafood Wholesale Market, Wuhan city, Hubei Province, China1. |
| T7 | 362-502 | Sentence | denotes | A total of 75,465 cases with SARS-CoV-2 infections have been confirmed up to date (February 20, 2020), and 2,236 people have died in China2. |
| T8 | 503-712 | Sentence | denotes | COVID-19 spreads rapidly by human-to-human transmission with a median incubation period of 3.0 days (range, 0 to 24.0), and the time from symptom onset to developing pneumonia is 4.0 days (range, 2.0 to 7.0)3. |
| T9 | 713-861 | Sentence | denotes | Respiratory droplets and direct contact are conventional transmission routes for SARS-CoV-2, and fecal-to-oral transmission might also have a role3. |
| T10 | 862-934 | Sentence | denotes | Fever, dry cough, and fatigue are common symptoms at onset of COVID-194. |
| T11 | 935-1030 | Sentence | denotes | Most patients have lymphopenia and bilateral ground-glass opacity changes on chest CT scans4,5. |
| T12 | 1031-1133 | Sentence | denotes | No specific antiviral treatments or vaccines are available because it is a new emerging viral disease. |
| T13 | 1134-1196 | Sentence | denotes | Development of SARS-CoV-2-based vaccines is urgently required. |