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PMC:7054527 / 1374-2963 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
43 25-34 Disease denotes pneumonia MESH:D011014
44 102-121 Disease denotes pneumonia infection MESH:D011014
45 306-315 Disease denotes pneumonia MESH:D011014
71 384-392 Species denotes patients Tax:9606
72 804-820 Species denotes SARS coronavirus Tax:694009
73 822-830 Species denotes SARS-CoV Tax:694009
74 1046-1053 Species denotes patient Tax:9606
75 1197-1214 Species denotes novel coronavirus Tax:2697049
76 1216-1225 Species denotes 2019-nCOV Tax:2697049
77 1264-1277 Species denotes coronaviruses Tax:11118
78 1290-1296 Species denotes humans Tax:9606
79 1475-1492 Species denotes novel coronavirus Tax:2697049
80 1502-1512 Species denotes SARS-CoV-2 Tax:2697049
81 1569-1586 Species denotes novel coronavirus Tax:2697049
82 421-436 Disease denotes viral pneumonia
83 442-447 Disease denotes fever MESH:D005334
84 449-454 Disease denotes cough MESH:D003371
85 460-467 Disease denotes myalgia MESH:D063806
86 471-478 Disease denotes fatigue MESH:D005221
87 556-564 Disease denotes headache MESH:D006261
88 566-576 Disease denotes hemoptysis MESH:D006469
89 582-590 Disease denotes diarrhea MESH:D003967
90 674-694 Disease denotes respiratory diseases MESH:D012140
91 954-969 Disease denotes viral pneumonia
92 1138-1147 Disease denotes pneumonia MESH:D011014
93 1349-1358 Disease denotes pneumonia MESH:D011014
94 1363-1383 Disease denotes Corona Virus Disease MESH:D018352
95 1385-1392 Disease denotes COVID19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T11 493-498 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T12 537-543 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T13 1072-1078 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T14 1087-1098 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T8 493-498 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 537-543 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 25-34 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T8 102-111 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T9 112-121 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 306-315 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T11 421-436 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T12 427-436 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T13 604-614 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T14 753-786 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T15 788-792 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T16 804-808 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 822-830 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 822-826 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 912-922 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T20 954-969 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T21 960-969 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T22 1107-1117 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T23 1132-1147 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T24 1138-1147 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T25 1343-1358 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T26 1349-1358 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T27 1385-1392 Disease denotes COVID19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 1502-1510 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 1502-1506 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T14 122-125 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T15 216-228 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T16 238-239 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 493-498 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T18 652-657 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T19 652-657 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T20 876-877 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 929-932 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T22 1025-1026 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 1031-1036 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 1195-1196 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 1370-1375 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T26 1445-1452 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 1087-1098 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T11 0-12 Sentence denotes Introduction
T12 13-97 Sentence denotes An emergent pneumonia outbreak originated in Wuhan City, in the late December 20191.
T13 98-202 Sentence denotes The pneumonia infection has rapidly spread from Wuhan to most other provinces and other 24 countries2,3.
T14 203-346 Sentence denotes World Health Organization declared a public health emergency of international concern over this global pneumonia outbreak on 30th January 2020.
T15 347-594 Sentence denotes The typical clinical symptoms of the patients who suffered from the novel viral pneumonia were fever, cough, and myalgia or fatigue with abnormal chest CT, and the less common symptoms were sputum production, headache, hemoptysis, and diarrhea4–6.
T16 595-698 Sentence denotes This new infectious agent is more likely to affect older males to cause severe respiratory diseases7,8.
T17 699-982 Sentence denotes Some of the clinical symptoms were different from the severe acute respiratory syndrome (SARS) caused by SARS coronavirus (SARS-CoV) that happened in 2002–2003, indicating that a new person-to-person transmission infectious agent has caused this emergent viral pneumonia outbreak8,9.
T18 983-1102 Sentence denotes Chinese researchers have quickly isolated a new virus from the patient and sequenced its genome (29,903 nucleotides)10.
T19 1103-1299 Sentence denotes The infectious agent of this viral pneumonia happenening in Wuhan was finally identified as a novel coronavirus (2019-nCOV), the seventh member of the family of coronaviruses that infect humans11.
T20 1300-1589 Sentence denotes On 11th February 2020, WHO named the novel viral pneumonia as “Corona Virus Disease (COVID19)”, while the international Committee on Taxonomy of Viruses (ICTV) suggested this novel coronavirus name as “SARS-CoV-2” due to the phylogenetic and taxonomic analysis of this novel coronavirus12.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T4 25-34 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 102-111 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 306-315 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 427-436 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 442-447 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T9 449-454 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T10 460-467 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T11 471-478 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T12 556-564 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T13 566-576 Phenotype denotes hemoptysis http://purl.obolibrary.org/obo/HP_0002105
T14 960-969 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 1138-1147 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T16 1349-1358 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32127517-31978945-53455622 91-96 31978945 denotes 20191
32127517-31986257-53455623 198-199 31986257 denotes 2
32127517-31986264-53455624 590-591 31986264 denotes 4
32127517-32007143-53455625 694-695 32007143 denotes 7
32127517-31986261-53455626 696-697 31986261 denotes 8
32127517-31986261-53455627 978-979 31986261 denotes 8
T12184 91-96 31978945 denotes 20191
T21607 198-199 31986257 denotes 2
T56375 590-591 31986264 denotes 4
T34499 694-695 32007143 denotes 7
T80906 696-697 31986261 denotes 8
T66250 978-979 31986261 denotes 8