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PMC:7047374 / 1335-3455 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
26 2-22 Disease denotes secondary infections MESH:D060085
27 61-69 Disease denotes infected MESH:D007239
31 191-201 Species denotes SARS-CoV-2 Tax:2697049
32 296-329 Disease denotes severe acute respiratory syndrome MESH:D045169
33 346-350 Disease denotes MERS MESH:D018352
42 611-628 Species denotes novel coronavirus Tax:2697049
43 630-639 Species denotes 2019-nCoV Tax:2697049
44 661-708 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
45 710-720 Species denotes SARS-CoV-2 Tax:2697049
46 1291-1297 Species denotes people Tax:9606
47 492-501 Disease denotes pneumonia MESH:D011014
48 1102-1111 Disease denotes infection MESH:D007239
49 1302-1310 Disease denotes infected MESH:D007239
51 1838-1844 Species denotes people Tax:9606
59 1941-1947 Species denotes People Tax:9606
60 2076-2081 Species denotes human Tax:9606
64 2033-2042 Disease denotes infection MESH:D007239
65 2082-2091 Disease denotes infection MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T10 12-22 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T11 191-199 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 191-195 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 296-329 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T14 492-501 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T15 661-708 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T16 661-694 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T17 710-718 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 710-714 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 1102-1111 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 2033-2042 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T21 2082-2091 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T17 52-53 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 427-439 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T19 609-610 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 764-771 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T21 775-777 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T22 826-831 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 897-902 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 912-915 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T25 956-961 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 979-980 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 1040-1044 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3, 4
T28 1361-1362 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1454-1459 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T30 1491-1499 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T31 1551-1558 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T32 1773-1776 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T33 1918-1919 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 1920-1924 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T35 2063-2067 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T36 2076-2081 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T37 2103-2107 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 1584-1596 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T3 1653-1659 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 492-501 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T13 133-144 Sentence denotes Conclusions
T14 145-376 Sentence denotes Our model showed that the transmissibility of SARS-CoV-2 was higher than the Middle East respiratory syndrome in the Middle East countries, similar to severe acute respiratory syndrome, but lower than MERS in the Republic of Korea.
T15 378-388 Sentence denotes Background
T16 389-872 Sentence denotes On 31 December 2019, the World Health Organization (WHO) China Country Office was informed of cases of pneumonia of unknown etiology (unknown cause) detected in Wuhan City, Hubei Province of China, and WHO reported that a novel coronavirus (2019-nCoV), which was named as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) by International Committee on Taxonomy of Viruses on 11 February, 2020, was identified as the causative virus by Chinese authorities on 7 January [1].
T17 873-1046 Sentence denotes It is reported that the virus might be bat origin [2], and the transmission of the virus might related to a seafood market (Huanan Seafood Wholesale Market) exposure [3, 4].
T18 1047-1146 Sentence denotes The genetic features and some clinical findings of the infection have been reported recently [4–6].
T19 1147-1231 Sentence denotes Potentials for international spread via commercial air travel had been assessed [7].
T20 1232-1325 Sentence denotes Public health concerns are being paid globally on how many people are infected and suspected.
T21 1326-1460 Sentence denotes Therefore, it is urgent to develop a mathematical model to estimate the transmissibility and dynamic of the transmission of the virus.
T22 1461-1533 Sentence denotes There were several researches focusing on mathematical modelling [3, 8].
T23 1534-1759 Sentence denotes These researches focused on calculating the basic reproduction number (R0) by using the serial intervals and intrinsic growth rate [3, 9, 10], or using ordinary differential equations and Markov Chain Monte Carlo methods [8].
T24 1760-1889 Sentence denotes However, the bat origin and the transmission route form the seafood market to people were not considered in the published models.
T25 1890-2092 Sentence denotes In this study, we developed a Bats-Hosts-Reservoir-People (BHRP) transmission network model for simulating the potential transmission from the infection source (probably be bats) to the human infection.

2_test

Id Subject Object Predicate Lexical cue
32111262-31978945-47462505 1141-1142 31978945 denotes 4
32111262-32007643-47462506 1669-1670 32007643 denotes 9
T2621 1141-1142 31978945 denotes 4
T24062 1669-1670 32007643 denotes 9