PMC:7039956 / 7077-7692 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"218","span":{"begin":195,"end":198},"obj":"Gene"},{"id":"219","span":{"begin":200,"end":205},"obj":"Gene"},{"id":"220","span":{"begin":211,"end":216},"obj":"Gene"},{"id":"221","span":{"begin":255,"end":258},"obj":"Gene"},{"id":"222","span":{"begin":260,"end":264},"obj":"Gene"},{"id":"223","span":{"begin":266,"end":272},"obj":"Gene"},{"id":"224","span":{"begin":274,"end":277},"obj":"Gene"},{"id":"225","span":{"begin":279,"end":285},"obj":"Gene"},{"id":"226","span":{"begin":287,"end":293},"obj":"Gene"},{"id":"227","span":{"begin":328,"end":331},"obj":"Gene"},{"id":"228","span":{"begin":333,"end":337},"obj":"Gene"},{"id":"229","span":{"begin":339,"end":343},"obj":"Gene"},{"id":"230","span":{"begin":349,"end":353},"obj":"Gene"},{"id":"231","span":{"begin":392,"end":397},"obj":"Gene"},{"id":"232","span":{"begin":399,"end":404},"obj":"Gene"},{"id":"233","span":{"begin":416,"end":422},"obj":"Gene"},{"id":"234","span":{"begin":460,"end":464},"obj":"Gene"},{"id":"235","span":{"begin":466,"end":471},"obj":"Gene"},{"id":"236","span":{"begin":473,"end":479},"obj":"Gene"},{"id":"237","span":{"begin":481,"end":486},"obj":"Gene"},{"id":"238","span":{"begin":521,"end":527},"obj":"Gene"},{"id":"239","span":{"begin":529,"end":534},"obj":"Gene"},{"id":"240","span":{"begin":540,"end":545},"obj":"Gene"},{"id":"241","span":{"begin":593,"end":599},"obj":"Gene"},{"id":"242","span":{"begin":601,"end":604},"obj":"Gene"},{"id":"243","span":{"begin":610,"end":613},"obj":"Gene"}],"attributes":[{"id":"A218","pred":"tao:has_database_id","subj":"218","obj":"Gene:104444"},{"id":"A219","pred":"tao:has_database_id","subj":"219","obj":"Gene:16687"},{"id":"A220","pred":"tao:has_database_id","subj":"220","obj":"Gene:16661"},{"id":"A221","pred":"tao:has_database_id","subj":"221","obj":"Gene:14089"},{"id":"A222","pred":"tao:has_database_id","subj":"222","obj":"Gene:14726"},{"id":"A223","pred":"tao:has_database_id","subj":"223","obj":"Gene:12843"},{"id":"A224","pred":"tao:has_database_id","subj":"224","obj":"Gene:13179"},{"id":"A225","pred":"tao:has_database_id","subj":"225","obj":"Gene:1281"},{"id":"A226","pred":"tao:has_database_id","subj":"226","obj":"Gene:1291"},{"id":"A227","pred":"tao:has_database_id","subj":"227","obj":"Gene:914"},{"id":"A228","pred":"tao:has_database_id","subj":"228","obj":"Gene:915"},{"id":"A229","pred":"tao:has_database_id","subj":"229","obj":"Gene:916"},{"id":"A230","pred":"tao:has_database_id","subj":"230","obj":"Gene:917"},{"id":"A231","pred":"tao:has_database_id","subj":"231","obj":"Gene:9332"},{"id":"A232","pred":"tao:has_database_id","subj":"232","obj":"Gene:1436"},{"id":"A233","pred":"tao:has_database_id","subj":"233","obj":"Gene:2212"},{"id":"A234","pred":"tao:has_database_id","subj":"234","obj":"Gene:1215"},{"id":"A235","pred":"tao:has_database_id","subj":"235","obj":"Gene:2206"},{"id":"A236","pred":"tao:has_database_id","subj":"236","obj":"Gene:100503895"},{"id":"A237","pred":"tao:has_database_id","subj":"237","obj":"Gene:17229"},{"id":"A238","pred":"tao:has_database_id","subj":"238","obj":"Gene:75345"},{"id":"A239","pred":"tao:has_database_id","subj":"239","obj":"Gene:329693"},{"id":"A240","pred":"tao:has_database_id","subj":"240","obj":"Gene:12518"},{"id":"A241","pred":"tao:has_database_id","subj":"241","obj":"Gene:18613"},{"id":"A242","pred":"tao:has_database_id","subj":"242","obj":"Gene:22371"},{"id":"A243","pred":"tao:has_database_id","subj":"243","obj":"Gene:13805"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"After the data preprocessing (shown in section “Materials and methods”), 22 969 cells were acquired and 7 cell types were identified (Fig. 2a), including epithelial cells (marker genes including SFN, KRT6A, and KRT10), fibroblasts (marker genes including FAP, PDPN, COL1A2, DCN, COL3A1, COL6A1), T cells (marker genes including CD2, CD3D, CD3E, and CD3G), macrophages (marker genes including CD163, CSF1R, CD68, and FCGR2A), mast cells (marker genes including CMA1, MS4A2, TPSAB1, TPSB2), B cells (marker genes including SLAMF7, FCRL5, and CD79A) and endothelial cells (marker genes including PECAM1, VWF, and ENG)."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T116","span":{"begin":80,"end":85},"obj":"Body_part"},{"id":"T117","span":{"begin":106,"end":110},"obj":"Body_part"},{"id":"T118","span":{"begin":154,"end":170},"obj":"Body_part"},{"id":"T119","span":{"begin":165,"end":170},"obj":"Body_part"},{"id":"T120","span":{"begin":219,"end":230},"obj":"Body_part"},{"id":"T121","span":{"begin":298,"end":303},"obj":"Body_part"},{"id":"T122","span":{"begin":356,"end":367},"obj":"Body_part"},{"id":"T123","span":{"begin":425,"end":435},"obj":"Body_part"},{"id":"T124","span":{"begin":430,"end":435},"obj":"Body_part"},{"id":"T125","span":{"begin":491,"end":496},"obj":"Body_part"},{"id":"T126","span":{"begin":551,"end":568},"obj":"Body_part"},{"id":"T127","span":{"begin":563,"end":568},"obj":"Body_part"}],"attributes":[{"id":"A116","pred":"fma_id","subj":"T116","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A117","pred":"fma_id","subj":"T117","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A118","pred":"fma_id","subj":"T118","obj":"http://purl.org/sig/ont/fma/fma66768"},{"id":"A119","pred":"fma_id","subj":"T119","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A120","pred":"fma_id","subj":"T120","obj":"http://purl.org/sig/ont/fma/fma63877"},{"id":"A121","pred":"fma_id","subj":"T121","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A122","pred":"fma_id","subj":"T122","obj":"http://purl.org/sig/ont/fma/fma63261"},{"id":"A123","pred":"fma_id","subj":"T123","obj":"http://purl.org/sig/ont/fma/fma66784"},{"id":"A124","pred":"fma_id","subj":"T124","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A125","pred":"fma_id","subj":"T125","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A126","pred":"fma_id","subj":"T126","obj":"http://purl.org/sig/ont/fma/fma66772"},{"id":"A127","pred":"fma_id","subj":"T127","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"After the data preprocessing (shown in section “Materials and methods”), 22 969 cells were acquired and 7 cell types were identified (Fig. 2a), including epithelial cells (marker genes including SFN, KRT6A, and KRT10), fibroblasts (marker genes including FAP, PDPN, COL1A2, DCN, COL3A1, COL6A1), T cells (marker genes including CD2, CD3D, CD3E, and CD3G), macrophages (marker genes including CD163, CSF1R, CD68, and FCGR2A), mast cells (marker genes including CMA1, MS4A2, TPSAB1, TPSB2), B cells (marker genes including SLAMF7, FCRL5, and CD79A) and endothelial cells (marker genes including PECAM1, VWF, and ENG)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T28","span":{"begin":255,"end":258},"obj":"Disease"},{"id":"T29","span":{"begin":333,"end":337},"obj":"Disease"}],"attributes":[{"id":"A28","pred":"mondo_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/MONDO_0021055"},{"id":"A29","pred":"mondo_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/MONDO_0014280"}],"text":"After the data preprocessing (shown in section “Materials and methods”), 22 969 cells were acquired and 7 cell types were identified (Fig. 2a), including epithelial cells (marker genes including SFN, KRT6A, and KRT10), fibroblasts (marker genes including FAP, PDPN, COL1A2, DCN, COL3A1, COL6A1), T cells (marker genes including CD2, CD3D, CD3E, and CD3G), macrophages (marker genes including CD163, CSF1R, CD68, and FCGR2A), mast cells (marker genes including CMA1, MS4A2, TPSAB1, TPSB2), B cells (marker genes including SLAMF7, FCRL5, and CD79A) and endothelial cells (marker genes including PECAM1, VWF, and ENG)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T125","span":{"begin":73,"end":75},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T126","span":{"begin":80,"end":85},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T127","span":{"begin":106,"end":116},"obj":"http://purl.obolibrary.org/obo/CL_0000000"},{"id":"T128","span":{"begin":139,"end":141},"obj":"http://purl.obolibrary.org/obo/CLO_0001236"},{"id":"T129","span":{"begin":154,"end":164},"obj":"http://purl.obolibrary.org/obo/CL_0000066"},{"id":"T130","span":{"begin":165,"end":170},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T131","span":{"begin":179,"end":184},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T132","span":{"begin":219,"end":230},"obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"T133","span":{"begin":239,"end":244},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T134","span":{"begin":296,"end":303},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T135","span":{"begin":312,"end":317},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T136","span":{"begin":376,"end":381},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T137","span":{"begin":399,"end":404},"obj":"http://purl.obolibrary.org/obo/PR_000002062"},{"id":"T138","span":{"begin":406,"end":410},"obj":"http://purl.obolibrary.org/obo/PR_000002064"},{"id":"T139","span":{"begin":430,"end":435},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T140","span":{"begin":444,"end":449},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T141","span":{"begin":489,"end":496},"obj":"http://purl.obolibrary.org/obo/CL_0000236"},{"id":"T142","span":{"begin":505,"end":510},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T143","span":{"begin":551,"end":568},"obj":"http://purl.obolibrary.org/obo/CL_0000115"},{"id":"T144","span":{"begin":577,"end":582},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"}],"text":"After the data preprocessing (shown in section “Materials and methods”), 22 969 cells were acquired and 7 cell types were identified (Fig. 2a), including epithelial cells (marker genes including SFN, KRT6A, and KRT10), fibroblasts (marker genes including FAP, PDPN, COL1A2, DCN, COL3A1, COL6A1), T cells (marker genes including CD2, CD3D, CD3E, and CD3G), macrophages (marker genes including CD163, CSF1R, CD68, and FCGR2A), mast cells (marker genes including CMA1, MS4A2, TPSAB1, TPSB2), B cells (marker genes including SLAMF7, FCRL5, and CD79A) and endothelial cells (marker genes including PECAM1, VWF, and ENG)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T13","span":{"begin":255,"end":258},"obj":"Chemical"}],"attributes":[{"id":"A13","pred":"chebi_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/CHEBI_73617"}],"text":"After the data preprocessing (shown in section “Materials and methods”), 22 969 cells were acquired and 7 cell types were identified (Fig. 2a), including epithelial cells (marker genes including SFN, KRT6A, and KRT10), fibroblasts (marker genes including FAP, PDPN, COL1A2, DCN, COL3A1, COL6A1), T cells (marker genes including CD2, CD3D, CD3E, and CD3G), macrophages (marker genes including CD163, CSF1R, CD68, and FCGR2A), mast cells (marker genes including CMA1, MS4A2, TPSAB1, TPSB2), B cells (marker genes including SLAMF7, FCRL5, and CD79A) and endothelial cells (marker genes including PECAM1, VWF, and ENG)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T55","span":{"begin":0,"end":615},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"After the data preprocessing (shown in section “Materials and methods”), 22 969 cells were acquired and 7 cell types were identified (Fig. 2a), including epithelial cells (marker genes including SFN, KRT6A, and KRT10), fibroblasts (marker genes including FAP, PDPN, COL1A2, DCN, COL3A1, COL6A1), T cells (marker genes including CD2, CD3D, CD3E, and CD3G), macrophages (marker genes including CD163, CSF1R, CD68, and FCGR2A), mast cells (marker genes including CMA1, MS4A2, TPSAB1, TPSB2), B cells (marker genes including SLAMF7, FCRL5, and CD79A) and endothelial cells (marker genes including PECAM1, VWF, and ENG)."}