For our co-localization analyses, we used summary statistics and genomic intervals from the 2014 Psychiatric Genomics Consortium (PGC) SCZ GWAS.35 We included 217 loci at a p value threshold of 1 × 10−6 (excluding the MHC locus), defined these loci by their LD r2 ≥ 0.6 with the lead SNP, and then merged overlapping loci. GWAS and eQTL signatures were qualitatively compared using p value-p value (P-P) plots, rendered in R, and LocusZoom36 plots.