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PMC:549712 / 50498-51109 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T14751 0-2 DT denotes An
T14752 11-15 NN denotes line
T14753 3-5 NN denotes ES
T14754 6-10 NN denotes cell
T14755 5-6 HYPH denotes -
T14756 73-83 VBN denotes identified
T14757 16-24 VBG denotes carrying
T14758 25-26 DT denotes a
T14759 43-49 NN denotes vector
T14760 27-28 NN denotes β
T14761 29-32 NN denotes geo
T14762 28-29 HYPH denotes -
T14763 33-37 NN denotes gene
T14764 38-42 NN denotes trap
T14765 37-38 HYPH denotes -
T14766 50-52 IN denotes in
T14767 53-56 DT denotes the
T14768 63-68 NN denotes locus
T14769 57-62 NN denotes Ptdsr
T14770 69-72 VBD denotes was
T14771 84-86 IN denotes by
T14772 87-96 VBG denotes searching
T14773 97-100 DT denotes the
T14774 113-121 NN denotes database
T14775 101-112 NNP denotes BayGenomics
T14776 122-123 -LRB- denotes (
T14777 157-159 CD denotes 48
T14778 123-134 NNP denotes BayGenomics
T14779 134-136 , denotes ,
T14780 136-139 NNP denotes San
T14781 140-149 NNP denotes Francisco
T14782 149-151 , denotes ,
T14783 151-154 NNP denotes USA
T14784 154-155 : denotes ;
T14785 156-157 -LRB- denotes [
T14786 159-160 -RRB- denotes ]
T14787 160-161 -RRB- denotes )
T14788 162-166 IN denotes with
T14789 167-170 DT denotes the
T14790 189-193 NN denotes cDNA
T14791 171-175 JJ denotes full
T14792 176-182 NN denotes length
T14793 175-176 HYPH denotes -
T14794 183-188 NN denotes Ptdsr
T14795 193-194 . denotes .
T14796 194-309 sentence denotes A single ES-cell line was identified carrying the gene-trap in intron V, between exons V and VI of the Ptdsr gene.
T14797 195-196 DT denotes A
T14798 212-216 NN denotes line
T14799 197-203 JJ denotes single
T14800 204-206 NN denotes ES
T14801 207-211 NN denotes cell
T14802 206-207 HYPH denotes -
T14803 232-240 VBG denotes carrying
T14804 217-220 VBD denotes was
T14805 221-231 VBN denotes identified
T14806 241-244 DT denotes the
T14807 250-254 NN denotes trap
T14808 245-249 NN denotes gene
T14809 249-250 HYPH denotes -
T14810 255-257 IN denotes in
T14811 258-264 NN denotes intron
T14812 265-266 CD denotes V
T14813 266-268 , denotes ,
T14814 268-275 IN denotes between
T14815 276-281 NNS denotes exons
T14816 282-283 CD denotes V
T14817 284-287 CC denotes and
T14818 288-290 CD denotes VI
T14819 291-293 IN denotes of
T14820 294-297 DT denotes the
T14821 304-308 NN denotes gene
T14822 298-303 NN denotes Ptdsr
T14823 308-309 . denotes .
T14824 309-425 sentence denotes Chimeric mice were generated by microinjection into CB20 blastocysts and transfer to pseudopregnant foster mothers.
T14825 310-318 JJ denotes Chimeric
T14826 319-323 NNS denotes mice
T14827 329-338 VBN denotes generated
T14828 324-328 VBD denotes were
T14829 339-341 IN denotes by
T14830 342-356 NN denotes microinjection
T14831 357-361 IN denotes into
T14832 362-366 NN denotes CB20
T14833 367-378 NNS denotes blastocysts
T14834 379-382 CC denotes and
T14835 383-391 NN denotes transfer
T14836 392-394 IN denotes to
T14837 395-409 JJ denotes pseudopregnant
T14838 417-424 NNS denotes mothers
T14839 410-416 JJ denotes foster
T14840 424-425 . denotes .
T14841 425-478 sentence denotes Chimeric males were mated with 129P2/OlaHsd females.
T14842 426-434 JJ denotes Chimeric
T14843 435-440 NNS denotes males
T14844 446-451 VBN denotes mated
T14845 441-445 VBD denotes were
T14846 452-456 IN denotes with
T14847 457-462 NN denotes 129P2
T14848 463-469 NN denotes OlaHsd
T14849 462-463 HYPH denotes /
T14850 470-477 NNS denotes females
T14851 477-478 . denotes .
T14852 478-611 sentence denotes Germ-line transmission of the mutant gene-trap allele was verified by expression analysis using β-galactosidase staining and RT-PCR.
T14853 479-483 NN denotes Germ
T14854 484-488 NN denotes line
T14855 483-484 HYPH denotes -
T14856 489-501 NN denotes transmission
T14857 537-545 VBN denotes verified
T14858 502-504 IN denotes of
T14859 505-508 DT denotes the
T14860 526-532 NN denotes allele
T14861 509-515 JJ denotes mutant
T14862 516-520 NN denotes gene
T14863 521-525 NN denotes trap
T14864 520-521 HYPH denotes -
T14865 533-536 VBD denotes was
T14866 546-548 IN denotes by
T14867 549-559 NN denotes expression
T14868 560-568 NN denotes analysis
T14869 569-574 VBG denotes using
T14870 575-576 NN denotes β
T14871 577-590 NN denotes galactosidase
T14872 576-577 HYPH denotes -
T14873 591-599 NN denotes staining
T14874 600-603 CC denotes and
T14875 604-606 NN denotes RT
T14876 607-610 NN denotes PCR
T14877 606-607 HYPH denotes -
T14878 610-611 . denotes .
R8886 T14751 T14752 det An,line
R8887 T14752 T14756 nsubjpass line,identified
R8888 T14753 T14754 compound ES,cell
R8889 T14754 T14752 compound cell,line
R8890 T14755 T14754 punct -,cell
R8891 T14757 T14752 acl carrying,line
R8892 T14758 T14759 det a,vector
R8893 T14759 T14757 dobj vector,carrying
R8894 T14760 T14761 compound β,geo
R8895 T14761 T14759 compound geo,vector
R8896 T14762 T14761 punct -,geo
R8897 T14763 T14764 compound gene,trap
R8898 T14764 T14759 compound trap,vector
R8899 T14765 T14764 punct -,trap
R8900 T14766 T14757 prep in,carrying
R8901 T14767 T14768 det the,locus
R8902 T14768 T14766 pobj locus,in
R8903 T14769 T14768 compound Ptdsr,locus
R8904 T14770 T14756 auxpass was,identified
R8905 T14771 T14756 prep by,identified
R8906 T14772 T14771 pcomp searching,by
R8907 T14773 T14774 det the,database
R8908 T14774 T14772 dobj database,searching
R8909 T14775 T14774 compound BayGenomics,database
R8910 T14776 T14777 punct (,48
R8911 T14777 T14774 parataxis 48,database
R8912 T14778 T14777 dep BayGenomics,48
R8913 T14779 T14778 punct ", ",BayGenomics
R8914 T14780 T14781 compound San,Francisco
R8915 T14781 T14778 npadvmod Francisco,BayGenomics
R8916 T14782 T14778 punct ", ",BayGenomics
R8917 T14783 T14778 npadvmod USA,BayGenomics
R8918 T14784 T14777 punct ;,48
R8919 T14785 T14777 punct [,48
R8920 T14786 T14777 punct ],48
R8921 T14787 T14777 punct ),48
R8922 T14788 T14772 prep with,searching
R8923 T14789 T14790 det the,cDNA
R8924 T14790 T14788 pobj cDNA,with
R8925 T14791 T14792 amod full,length
R8926 T14792 T14790 compound length,cDNA
R8927 T14793 T14792 punct -,length
R8928 T14794 T14790 compound Ptdsr,cDNA
R8929 T14795 T14756 punct .,identified
R8930 T14797 T14798 det A,line
R8931 T14798 T14803 nsubjpass line,carrying
R8932 T14799 T14798 amod single,line
R8933 T14800 T14801 compound ES,cell
R8934 T14801 T14798 compound cell,line
R8935 T14802 T14801 punct -,cell
R8936 T14804 T14803 auxpass was,carrying
R8937 T14805 T14803 aux identified,carrying
R8938 T14806 T14807 det the,trap
R8939 T14807 T14803 dobj trap,carrying
R8940 T14808 T14807 compound gene,trap
R8941 T14809 T14807 punct -,trap
R8942 T14810 T14803 prep in,carrying
R8943 T14811 T14810 pobj intron,in
R8944 T14812 T14811 nummod V,intron
R8945 T14813 T14811 punct ", ",intron
R8946 T14814 T14811 prep between,intron
R8947 T14815 T14816 nmod exons,V
R8948 T14816 T14814 pobj V,between
R8949 T14817 T14816 cc and,V
R8950 T14818 T14816 conj VI,V
R8951 T14819 T14816 prep of,V
R8952 T14820 T14821 det the,gene
R8953 T14821 T14819 pobj gene,of
R8954 T14822 T14821 compound Ptdsr,gene
R8955 T14823 T14803 punct .,carrying
R8956 T14825 T14826 amod Chimeric,mice
R8957 T14826 T14827 nsubjpass mice,generated
R8958 T14828 T14827 auxpass were,generated
R8959 T14829 T14827 prep by,generated
R8960 T14830 T14829 pobj microinjection,by
R8961 T14831 T14830 prep into,microinjection
R8962 T14832 T14833 compound CB20,blastocysts
R8963 T14833 T14831 pobj blastocysts,into
R8964 T14834 T14830 cc and,microinjection
R8965 T14835 T14830 conj transfer,microinjection
R8966 T14836 T14835 prep to,transfer
R8967 T14837 T14838 amod pseudopregnant,mothers
R8968 T14838 T14836 pobj mothers,to
R8969 T14839 T14838 amod foster,mothers
R8970 T14840 T14827 punct .,generated
R8971 T14842 T14843 amod Chimeric,males
R8972 T14843 T14844 nsubjpass males,mated
R8973 T14845 T14844 auxpass were,mated
R8974 T14846 T14844 prep with,mated
R8975 T14847 T14848 compound 129P2,OlaHsd
R8976 T14848 T14850 compound OlaHsd,females
R8977 T14849 T14848 punct /,OlaHsd
R8978 T14850 T14846 pobj females,with
R8979 T14851 T14844 punct .,mated
R8980 T14853 T14854 compound Germ,line
R8981 T14854 T14856 compound line,transmission
R8982 T14855 T14854 punct -,line
R8983 T14856 T14857 nsubjpass transmission,verified
R8984 T14858 T14856 prep of,transmission
R8985 T14859 T14860 det the,allele
R8986 T14860 T14858 pobj allele,of
R8987 T14861 T14860 amod mutant,allele
R8988 T14862 T14863 compound gene,trap
R8989 T14863 T14860 compound trap,allele
R8990 T14864 T14863 punct -,trap
R8991 T14865 T14857 auxpass was,verified
R8992 T14866 T14857 prep by,verified
R8993 T14867 T14868 compound expression,analysis
R8994 T14868 T14866 pobj analysis,by
R8995 T14869 T14857 advcl using,verified
R8996 T14870 T14871 compound β,galactosidase
R8997 T14871 T14873 compound galactosidase,staining
R8998 T14872 T14871 punct -,galactosidase
R8999 T14873 T14869 dobj staining,using
R9000 T14874 T14873 cc and,staining
R9001 T14875 T14876 compound RT,PCR
R9002 T14876 T14873 conj PCR,staining
R9003 T14877 T14876 punct -,PCR
R9004 T14878 T14857 punct .,verified

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T14431 3-10 CL:0002322 denotes ES-cell
T14432 6-10 CL_GO_EXT:cell denotes cell
T14433 27-32 GO_EXT:beta_geo denotes β-geo
T14434 33-42 SO_EXT:gene_trap_or_trap_construct denotes gene-trap
T14435 43-49 SO_EXT:0000440 denotes vector
T14436 57-62 PR_EXT:000009218 denotes Ptdsr
T14437 183-188 PR_EXT:000009218 denotes Ptdsr
T14438 189-193 SO_EXT:cDNA denotes cDNA
T14439 204-211 CL:0002322 denotes ES-cell
T14440 207-211 CL_GO_EXT:cell denotes cell
T14441 245-254 SO_EXT:gene_trap_or_trap_construct denotes gene-trap
T14442 258-264 SO_EXT:0000188 denotes intron
T14443 276-281 SO_EXT:0000147 denotes exons
T14444 298-303 PR_EXT:000009218 denotes Ptdsr
T14445 304-308 SO_EXT:0000704 denotes gene
T14446 319-323 NCBITaxon:10088 denotes mice
T14447 367-378 UBERON:0000358 denotes blastocysts
T14448 383-391 GO_EXT:biological_movement_or_translocation_process denotes transfer
T14449 435-440 PATO_UBERON_EXT:male_or_bearer_of_maleness denotes males
T14450 446-451 GO:0007618 denotes mated
T14451 470-477 PATO_UBERON_EXT:female_or_bearer_of_femaleness denotes females
T14452 509-515 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T14453 516-525 SO_EXT:gene_trap_or_trap_construct denotes gene-trap
T14454 526-532 SO_EXT:0001023 denotes allele
T14455 549-559 GO:0010467 denotes expression
T14456 575-590 GO_EXT:0004565 denotes β-galactosidase
T14457 604-606 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T14345 3-10 CL:0002322 denotes ES-cell
T14346 33-37 SO:0000704 denotes gene
T14347 43-49 SO:0000440 denotes vector
T14348 57-62 PR:000009218 denotes Ptdsr
T14349 183-188 PR:000009218 denotes Ptdsr
T14350 204-211 CL:0002322 denotes ES-cell
T14351 245-249 SO:0000704 denotes gene
T14352 258-264 SO:0000188 denotes intron
T14353 276-281 SO:0000147 denotes exons
T14354 298-303 PR:000009218 denotes Ptdsr
T14355 304-308 SO:0000704 denotes gene
T14356 319-323 NCBITaxon:10088 denotes mice
T14357 367-378 UBERON:0000358 denotes blastocysts
T14358 446-451 GO:0007618 denotes mated
T14359 516-520 SO:0000704 denotes gene
T14360 526-532 SO:0001023 denotes allele
T14361 549-559 GO:0010467 denotes expression

2_test

Id Subject Object Predicate Lexical cue
15345036-12520002-55938561 157-159 12520002 denotes 48