Table 1  Number of Genes Tested and asQTLs Discovered at FDR = 1% in Each Population and by Each Method
Population   Number of Genes: Altrans   asQTLs Altrans   Number of Genes: Cufflinks   asQTLs Cufflinks   Overlap   Overlap p Value
EUR  7,443  1,427  7,148  1,737  780  1.3 × 10−4
YRI  7,720  166  7,391  304  76  1.2 × 10−4
The overlap column lists the common genes between the methods and the p value refers to this overlap arising by chance.