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PMC:441373 / 42989-44651 JSONTXT

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Id Subject Object Predicate Lexical cue
T10440 8-10 IN denotes of
T10441 11-21 NN denotes vertebrate
T10442 22-26 NN denotes TACC
T10443 27-32 NNS denotes cDNAs
T10444 32-297 sentence denotes The rabbit TACC3 was cloned by rt-PCR using the "TACC4" specific primer T4RACE2 [9] (5'-cccgaactgctccaggtaatcgatctc-3') and a consensus primer, T3con2, designed to the region encompassing the vertebrate TACC3 initiator methionine (5'-tatgagtctgcaggtcttaaacgac-3').
T10445 33-36 DT denotes The
T10446 44-49 NN denotes TACC3
T10447 37-43 NN denotes rabbit
T10448 54-60 VBN denotes cloned
T10449 50-53 VBD denotes was
T10450 61-63 IN denotes by
T10451 64-66 NN denotes rt
T10452 67-70 NN denotes PCR
T10453 66-67 HYPH denotes -
T10454 71-76 VBG denotes using
T10455 77-80 DT denotes the
T10456 98-104 NN denotes primer
T10457 81-82 `` denotes "
T10458 89-97 JJ denotes specific
T10459 82-87 NN denotes TACC4
T10460 87-88 '' denotes "
T10461 105-112 NN denotes T4RACE2
T10462 113-114 -LRB- denotes [
T10463 114-115 CD denotes 9
T10464 115-116 -RRB- denotes ]
T10465 117-118 -LRB- denotes (
T10466 121-148 NN denotes cccgaactgctccaggtaatcgatctc
T10467 118-119 CD denotes 5
T10468 119-120 SYM denotes '
T10469 120-121 HYPH denotes -
T10470 148-149 HYPH denotes -
T10471 149-150 CD denotes 3
T10472 150-151 SYM denotes '
T10473 151-152 -RRB- denotes )
T10474 153-156 CC denotes and
T10475 157-158 DT denotes a
T10476 169-175 NN denotes primer
T10477 159-168 NN denotes consensus
T10478 175-177 , denotes ,
T10479 177-183 NN denotes T3con2
T10480 183-185 , denotes ,
T10481 185-193 VBN denotes designed
T10482 194-196 IN denotes to
T10483 197-200 DT denotes the
T10484 201-207 NN denotes region
T10485 208-220 VBG denotes encompassing
T10486 221-224 DT denotes the
T10487 242-251 NN denotes initiator
T10488 225-235 NN denotes vertebrate
T10489 236-241 NN denotes TACC3
T10490 252-262 NN denotes methionine
T10491 263-264 -LRB- denotes (
T10492 267-292 NN denotes tatgagtctgcaggtcttaaacgac
T10493 264-265 CD denotes 5
T10494 265-266 SYM denotes '
T10495 266-267 HYPH denotes -
T10496 292-293 HYPH denotes -
T10497 293-294 CD denotes 3
T10498 294-295 SYM denotes '
T10499 295-296 -RRB- denotes )
T10500 296-297 . denotes .
T10501 297-683 sentence denotes For cloning the mouse Tacc1X cDNA, the primers used were based upon the genomic sequence reported, and the sequence of the IMAGE cDNA clone 4933429K08: T1XF (5'-ccatgttcagtcattggcaggtc-3'), T1XF2 (5'-ctgcagaaccaacagttcaag-3'), T1XR1 (5'-agatctgtgacatcacagctc-3'), T1XR2 (5'-ctcgagtcagttagtcttatccagctt-3'), BB617F (5'-accaccaacttgagtacctg-3') and BB617R (5'-gtatcttgaactgttggttctg-3').
T10502 298-301 IN denotes For
T10503 355-360 VBN denotes based
T10504 302-309 VBG denotes cloning
T10505 310-313 DT denotes the
T10506 327-331 NN denotes cDNA
T10507 314-319 NN denotes mouse
T10508 320-326 NN denotes Tacc1X
T10509 331-333 , denotes ,
T10510 333-336 DT denotes the
T10511 337-344 NNS denotes primers
T10512 345-349 VBN denotes used
T10513 350-354 VBD denotes were
T10514 361-365 IN denotes upon
T10515 366-369 DT denotes the
T10516 378-386 NN denotes sequence
T10517 370-377 JJ denotes genomic
T10518 387-395 VBN denotes reported
T10519 395-397 , denotes ,
T10520 397-400 CC denotes and
T10521 401-404 DT denotes the
T10522 405-413 NN denotes sequence
T10523 414-416 IN denotes of
T10524 417-420 DT denotes the
T10525 432-437 NN denotes clone
T10526 421-426 NN denotes IMAGE
T10527 427-431 NN denotes cDNA
T10528 438-448 NN denotes 4933429K08
T10529 448-450 : denotes :
T10530 450-454 NN denotes T1XF
T10531 455-456 -LRB- denotes (
T10532 459-482 NN denotes ccatgttcagtcattggcaggtc
T10533 456-457 CD denotes 5
T10534 457-458 SYM denotes '
T10535 458-459 HYPH denotes -
T10536 482-483 HYPH denotes -
T10537 483-484 CD denotes 3
T10538 484-485 SYM denotes '
T10539 485-486 -RRB- denotes )
T10540 486-488 , denotes ,
T10541 488-493 NN denotes T1XF2
T10542 494-495 -LRB- denotes (
T10543 498-519 NN denotes ctgcagaaccaacagttcaag
T10544 495-496 CD denotes 5
T10545 496-497 SYM denotes '
T10546 497-498 HYPH denotes -
T10547 519-520 HYPH denotes -
T10548 520-521 CD denotes 3
T10549 521-522 SYM denotes '
T10550 522-523 -RRB- denotes )
T10551 523-525 , denotes ,
T10552 525-530 NN denotes T1XR1
T10553 531-532 -LRB- denotes (
T10554 535-556 NN denotes agatctgtgacatcacagctc
T10555 532-533 CD denotes 5
T10556 533-534 SYM denotes '
T10557 534-535 HYPH denotes -
T10558 556-557 HYPH denotes -
T10559 557-558 CD denotes 3
T10560 558-559 SYM denotes '
T10561 559-560 -RRB- denotes )
T10562 560-562 , denotes ,
T10563 562-567 NN denotes T1XR2
T10564 568-569 -LRB- denotes (
T10565 572-599 NN denotes ctcgagtcagttagtcttatccagctt
T10566 569-570 CD denotes 5
T10567 570-571 SYM denotes '
T10568 571-572 HYPH denotes -
T10569 599-600 HYPH denotes -
T10570 600-601 CD denotes 3
T10571 601-602 SYM denotes '
T10572 602-603 -RRB- denotes )
T10573 603-605 , denotes ,
T10574 605-611 NN denotes BB617F
T10575 612-613 -LRB- denotes (
T10576 616-636 NN denotes accaccaacttgagtacctg
T10577 613-614 CD denotes 5
T10578 614-615 SYM denotes '
T10579 615-616 HYPH denotes -
T10580 636-637 HYPH denotes -
T10581 637-638 CD denotes 3
T10582 638-639 SYM denotes '
T10583 639-640 -RRB- denotes )
T10584 641-644 CC denotes and
T10585 645-651 NN denotes BB617R
T10586 652-653 -LRB- denotes (
T10587 656-678 NN denotes gtatcttgaactgttggttctg
T10588 653-654 CD denotes 5
T10589 654-655 SYM denotes '
T10590 655-656 HYPH denotes -
T10591 678-679 HYPH denotes -
T10592 679-680 CD denotes 3
T10593 680-681 SYM denotes '
T10594 681-682 -RRB- denotes )
T10595 682-683 . denotes .
T10596 683-890 sentence denotes For analysis of TACC1 splice variants, the forward primers used were located in exon 1b: EF (5'-gagagatgcgaaatcagcg-3'), Exon 1d: X3F (5'-agtcaaagaaggcatctgcag-3'), Exon 1a: 1DF (5'-ccaagttctgcgccatggg-3').
T10597 684-687 IN denotes For
T10598 753-760 VBN denotes located
T10599 688-696 NN denotes analysis
T10600 697-699 IN denotes of
T10601 700-705 NN denotes TACC1
T10602 713-721 NNS denotes variants
T10603 706-712 NN denotes splice
T10604 721-723 , denotes ,
T10605 723-726 DT denotes the
T10606 735-742 NNS denotes primers
T10607 727-734 JJ denotes forward
T10608 743-747 VBN denotes used
T10609 748-752 VBD denotes were
T10610 761-763 IN denotes in
T10611 764-768 NN denotes exon
T10612 769-771 CD denotes 1b
T10613 771-773 : denotes :
T10614 773-775 NN denotes EF
T10615 780-799 NN denotes gagagatgcgaaatcagcg
T10616 776-777 -LRB- denotes (
T10617 777-778 CD denotes 5
T10618 778-779 SYM denotes '
T10619 779-780 HYPH denotes -
T10620 799-800 HYPH denotes -
T10621 800-801 CD denotes 3
T10622 801-802 SYM denotes '
T10623 802-803 -RRB- denotes )
T10624 803-805 , denotes ,
T10625 805-809 NN denotes Exon
T10626 810-812 CD denotes 1d
T10627 812-814 : denotes :
T10628 814-817 NN denotes X3F
T10629 822-843 NN denotes agtcaaagaaggcatctgcag
T10630 818-819 -LRB- denotes (
T10631 819-820 CD denotes 5
T10632 820-821 SYM denotes '
T10633 821-822 HYPH denotes -
T10634 843-844 HYPH denotes -
T10635 844-845 CD denotes 3
T10636 845-846 SYM denotes '
T10637 846-847 -RRB- denotes )
T10638 847-849 , denotes ,
T10639 849-853 NN denotes Exon
T10640 854-856 CD denotes 1a
T10641 856-858 : denotes :
T10642 858-861 NN denotes 1DF
T10643 866-885 NN denotes ccaagttctgcgccatggg
T10644 862-863 -LRB- denotes (
T10645 863-864 CD denotes 5
T10646 864-865 SYM denotes '
T10647 865-866 HYPH denotes -
T10648 885-886 HYPH denotes -
T10649 886-887 CD denotes 3
T10650 887-888 SYM denotes '
T10651 888-889 -RRB- denotes )
T10652 889-890 . denotes .
T10653 890-1149 sentence denotes The reverse primers used were: Exon 1: X1R (5'-ggatttggtctcggcttgcgaatc-3'), Exon 2: BX647R (5'-cttgtgattcttggcttttgg-3'), Exon 3: 6SPR (5'-gtcatcgcctcgtcctggagggc-3'), Exon 4a: 1DR (5'-aatttcacttgttcagtagtc-3'), Exon 5: 128R (5'-cctgcttctgaggatgaaaacgc-3').
T10654 891-894 DT denotes The
T10655 903-910 NNS denotes primers
T10656 895-902 JJ denotes reverse
T10657 916-920 VBD denotes were
T10658 911-915 VBN denotes used
T10659 920-922 : denotes :
T10660 922-926 NN denotes Exon
T10661 927-928 CD denotes 1
T10662 928-930 : denotes :
T10663 930-933 NN denotes X1R
T10664 938-962 NN denotes ggatttggtctcggcttgcgaatc
T10665 934-935 -LRB- denotes (
T10666 935-936 CD denotes 5
T10667 936-937 SYM denotes '
T10668 937-938 HYPH denotes -
T10669 962-963 HYPH denotes -
T10670 963-964 CD denotes 3
T10671 964-965 SYM denotes '
T10672 965-966 -RRB- denotes )
T10673 966-968 , denotes ,
T10674 968-972 NN denotes Exon
T10675 973-974 CD denotes 2
T10676 974-976 : denotes :
T10677 976-982 NN denotes BX647R
T10678 987-1008 NN denotes cttgtgattcttggcttttgg
T10679 983-984 -LRB- denotes (
T10680 984-985 CD denotes 5
T10681 985-986 SYM denotes '
T10682 986-987 HYPH denotes -
T10683 1008-1009 HYPH denotes -
T10684 1009-1010 CD denotes 3
T10685 1010-1011 SYM denotes '
T10686 1011-1012 -RRB- denotes )
T10687 1012-1014 , denotes ,
T10688 1014-1018 NN denotes Exon
T10689 1019-1020 CD denotes 3
T10690 1020-1022 : denotes :
T10691 1022-1026 NN denotes 6SPR
T10692 1031-1054 NN denotes gtcatcgcctcgtcctggagggc
T10693 1027-1028 -LRB- denotes (
T10694 1028-1029 CD denotes 5
T10695 1029-1030 SYM denotes '
T10696 1030-1031 HYPH denotes -
T10697 1054-1055 HYPH denotes -
T10698 1055-1056 CD denotes 3
T10699 1056-1057 SYM denotes '
T10700 1057-1058 -RRB- denotes )
T10701 1058-1060 , denotes ,
T10702 1060-1064 NN denotes Exon
T10703 1065-1067 NN denotes 4a
T10704 1067-1069 : denotes :
T10705 1069-1072 NN denotes 1DR
T10706 1077-1098 NN denotes aatttcacttgttcagtagtc
T10707 1073-1074 -LRB- denotes (
T10708 1074-1075 CD denotes 5
T10709 1075-1076 SYM denotes '
T10710 1076-1077 HYPH denotes -
T10711 1098-1099 HYPH denotes -
T10712 1099-1100 CD denotes 3
T10713 1100-1101 SYM denotes '
T10714 1101-1102 -RRB- denotes )
T10715 1102-1104 , denotes ,
T10716 1104-1108 NN denotes Exon
T10717 1109-1110 CD denotes 5
T10718 1110-1112 : denotes :
T10719 1112-1116 NN denotes 128R
T10720 1121-1144 NN denotes cctgcttctgaggatgaaaacgc
T10721 1117-1118 -LRB- denotes (
T10722 1118-1119 CD denotes 5
T10723 1119-1120 SYM denotes '
T10724 1120-1121 HYPH denotes -
T10725 1144-1145 HYPH denotes -
T10726 1145-1146 CD denotes 3
T10727 1146-1147 SYM denotes '
T10728 1147-1148 -RRB- denotes )
T10729 1148-1149 . denotes .
T10730 1149-1282 sentence denotes Rabbit brain poly A+ mRNA, mouse testis and human brain total RNA were obtained from BD Bioscience Clontech (Palo Alto, CA, U.S.A.).
T10731 1150-1156 NN denotes Rabbit
T10732 1157-1162 NN denotes brain
T10733 1171-1175 NN denotes mRNA
T10734 1163-1167 NN denotes poly
T10735 1168-1170 NN denotes A+
T10736 1221-1229 VBN denotes obtained
T10737 1175-1177 , denotes ,
T10738 1177-1182 NN denotes mouse
T10739 1183-1189 NN denotes testis
T10740 1190-1193 CC denotes and
T10741 1194-1199 JJ denotes human
T10742 1200-1205 NN denotes brain
T10743 1212-1215 NN denotes RNA
T10744 1206-1211 JJ denotes total
T10745 1216-1220 VBD denotes were
T10746 1230-1234 IN denotes from
T10747 1235-1237 NNP denotes BD
T10748 1249-1257 NNP denotes Clontech
T10749 1238-1248 NNP denotes Bioscience
T10750 1258-1259 -LRB- denotes (
T10751 1259-1263 NNP denotes Palo
T10752 1264-1268 NNP denotes Alto
T10753 1268-1270 , denotes ,
T10754 1270-1272 NNP denotes CA
T10755 1272-1274 , denotes ,
T10756 1274-1280 NNP denotes U.S.A.
T10757 1280-1281 -RRB- denotes )
T10758 1281-1282 . denotes .
T10759 1282-1452 sentence denotes Reverse transcription and PCR was performed as previously described, using either 1 μg of total RNA or 50 ng of poly A+ mRNA as template for first strand cDNA synthesis.
T10760 1283-1290 JJ denotes Reverse
T10761 1291-1304 NN denotes transcription
T10762 1317-1326 VBN denotes performed
T10763 1305-1308 CC denotes and
T10764 1309-1312 NN denotes PCR
T10765 1313-1316 VBD denotes was
T10766 1327-1329 IN denotes as
T10767 1341-1350 VBN denotes described
T10768 1330-1340 RB denotes previously
T10769 1350-1352 , denotes ,
T10770 1352-1357 VBG denotes using
T10771 1358-1364 CC denotes either
T10772 1367-1369 NN denotes μg
T10773 1365-1366 CD denotes 1
T10774 1370-1372 IN denotes of
T10775 1373-1378 JJ denotes total
T10776 1379-1382 NN denotes RNA
T10777 1383-1385 CC denotes or
T10778 1386-1388 CD denotes 50
T10779 1389-1391 NNS denotes ng
T10780 1392-1394 IN denotes of
T10781 1395-1399 NN denotes poly
T10782 1400-1402 NN denotes A+
T10783 1403-1407 NN denotes mRNA
T10784 1408-1410 IN denotes as
T10785 1411-1419 NN denotes template
T10786 1420-1423 IN denotes for
T10787 1424-1429 JJ denotes first
T10788 1430-1436 NN denotes strand
T10789 1437-1441 NN denotes cDNA
T10790 1442-1451 NN denotes synthesis
T10791 1451-1452 . denotes .
T10792 1452-1568 sentence denotes PCR products were cloned into pCR2.1 (Invitrogen, Carlsbad CA, U.S.A.) and transformed into InvαF' competent cells.
T10793 1453-1456 NN denotes PCR
T10794 1457-1465 NNS denotes products
T10795 1471-1477 VBN denotes cloned
T10796 1466-1470 VBD denotes were
T10797 1478-1482 IN denotes into
T10798 1483-1489 NN denotes pCR2.1
T10799 1490-1491 -LRB- denotes (
T10800 1491-1501 NNP denotes Invitrogen
T10801 1501-1503 , denotes ,
T10802 1503-1511 NNP denotes Carlsbad
T10803 1512-1514 NNP denotes CA
T10804 1514-1516 , denotes ,
T10805 1516-1522 NNP denotes U.S.A.
T10806 1522-1523 -RRB- denotes )
T10807 1524-1527 CC denotes and
T10808 1528-1539 VBN denotes transformed
T10809 1540-1544 IN denotes into
T10810 1545-1550 NN denotes InvαF
T10811 1552-1561 JJ denotes competent
T10812 1550-1551 POS denotes '
T10813 1562-1567 NNS denotes cells
T10814 1567-1568 . denotes .
T10815 1568-1662 sentence denotes Plasmid inserts were sequenced by the Roswell Park Cancer Institute Biopolymer Core Facility.
T10816 1569-1576 NN denotes Plasmid
T10817 1577-1584 NNS denotes inserts
T10818 1590-1599 VBN denotes sequenced
T10819 1585-1589 VBD denotes were
T10820 1600-1602 IN denotes by
T10821 1603-1606 DT denotes the
T10822 1653-1661 NNP denotes Facility
T10823 1607-1614 NNP denotes Roswell
T10824 1615-1619 NNP denotes Park
T10825 1627-1636 NNP denotes Institute
T10826 1620-1626 NNP denotes Cancer
T10827 1637-1647 NNP denotes Biopolymer
T10828 1648-1652 NNP denotes Core
T10829 1661-1662 . denotes .
T10439 0-7 NN denotes Cloning
R6688 T10440 T10439 prep of,Cloning
R6689 T10441 T10442 compound vertebrate,TACC
R6690 T10442 T10443 compound TACC,cDNAs
R6691 T10443 T10440 pobj cDNAs,of
R6692 T10445 T10446 det The,TACC3
R6693 T10446 T10448 nsubjpass TACC3,cloned
R6694 T10447 T10446 compound rabbit,TACC3
R6695 T10449 T10448 auxpass was,cloned
R6696 T10450 T10448 prep by,cloned
R6697 T10451 T10452 compound rt,PCR
R6698 T10452 T10450 pobj PCR,by
R6699 T10453 T10452 punct -,PCR
R6700 T10454 T10448 advcl using,cloned
R6701 T10455 T10456 det the,primer
R6702 T10456 T10454 dobj primer,using
R6703 T10457 T10458 punct """",specific
R6704 T10458 T10456 amod specific,primer
R6705 T10459 T10458 npadvmod TACC4,specific
R6706 T10460 T10458 punct """",specific
R6707 T10461 T10456 appos T4RACE2,primer
R6708 T10462 T10463 punct [,9
R6709 T10463 T10456 parataxis 9,primer
R6710 T10464 T10463 punct ],9
R6711 T10465 T10466 punct (,cccgaactgctccaggtaatcgatctc
R6712 T10466 T10456 parataxis cccgaactgctccaggtaatcgatctc,primer
R6713 T10467 T10466 nummod 5,cccgaactgctccaggtaatcgatctc
R6714 T10468 T10467 punct ',5
R6715 T10469 T10466 punct -,cccgaactgctccaggtaatcgatctc
R6716 T10470 T10466 punct -,cccgaactgctccaggtaatcgatctc
R6717 T10471 T10466 nummod 3,cccgaactgctccaggtaatcgatctc
R6718 T10472 T10466 punct ',cccgaactgctccaggtaatcgatctc
R6719 T10473 T10466 punct ),cccgaactgctccaggtaatcgatctc
R6720 T10474 T10456 cc and,primer
R6721 T10475 T10476 det a,primer
R6722 T10476 T10456 conj primer,primer
R6723 T10477 T10476 compound consensus,primer
R6724 T10478 T10476 punct ", ",primer
R6725 T10479 T10476 appos T3con2,primer
R6726 T10480 T10476 punct ", ",primer
R6727 T10481 T10476 acl designed,primer
R6728 T10482 T10481 prep to,designed
R6729 T10483 T10484 det the,region
R6730 T10484 T10482 pobj region,to
R6731 T10485 T10484 acl encompassing,region
R6732 T10486 T10487 det the,initiator
R6733 T10487 T10485 dobj initiator,encompassing
R6734 T10488 T10487 compound vertebrate,initiator
R6735 T10489 T10487 compound TACC3,initiator
R6736 T10490 T10487 appos methionine,initiator
R6737 T10491 T10492 punct (,tatgagtctgcaggtcttaaacgac
R6738 T10492 T10487 parataxis tatgagtctgcaggtcttaaacgac,initiator
R6739 T10493 T10492 nummod 5,tatgagtctgcaggtcttaaacgac
R6740 T10494 T10493 punct ',5
R6741 T10495 T10492 punct -,tatgagtctgcaggtcttaaacgac
R6742 T10496 T10492 punct -,tatgagtctgcaggtcttaaacgac
R6743 T10497 T10492 nummod 3,tatgagtctgcaggtcttaaacgac
R6744 T10498 T10492 punct ',tatgagtctgcaggtcttaaacgac
R6745 T10499 T10492 punct ),tatgagtctgcaggtcttaaacgac
R6746 T10500 T10448 punct .,cloned
R6747 T10502 T10503 prep For,based
R6748 T10504 T10502 pcomp cloning,For
R6749 T10505 T10506 det the,cDNA
R6750 T10506 T10504 dobj cDNA,cloning
R6751 T10507 T10508 compound mouse,Tacc1X
R6752 T10508 T10506 compound Tacc1X,cDNA
R6753 T10509 T10503 punct ", ",based
R6754 T10510 T10511 det the,primers
R6755 T10511 T10503 nsubjpass primers,based
R6756 T10512 T10511 acl used,primers
R6757 T10513 T10503 auxpass were,based
R6758 T10514 T10503 prep upon,based
R6759 T10515 T10516 det the,sequence
R6760 T10516 T10514 pobj sequence,upon
R6761 T10517 T10516 amod genomic,sequence
R6762 T10518 T10516 acl reported,sequence
R6763 T10519 T10516 punct ", ",sequence
R6764 T10520 T10516 cc and,sequence
R6765 T10521 T10522 det the,sequence
R6766 T10522 T10516 conj sequence,sequence
R6767 T10523 T10522 prep of,sequence
R6768 T10524 T10525 det the,clone
R6769 T10525 T10523 pobj clone,of
R6770 T10526 T10525 compound IMAGE,clone
R6771 T10527 T10525 compound cDNA,clone
R6772 T10528 T10525 appos 4933429K08,clone
R6773 T10529 T10522 punct : ,sequence
R6774 T10530 T10522 appos T1XF,sequence
R6775 T10531 T10532 punct (,ccatgttcagtcattggcaggtc
R6776 T10532 T10530 parataxis ccatgttcagtcattggcaggtc,T1XF
R6777 T10533 T10532 nummod 5,ccatgttcagtcattggcaggtc
R6778 T10534 T10533 punct ',5
R6779 T10535 T10532 punct -,ccatgttcagtcattggcaggtc
R6780 T10536 T10532 punct -,ccatgttcagtcattggcaggtc
R6781 T10537 T10532 nummod 3,ccatgttcagtcattggcaggtc
R6782 T10538 T10532 punct ',ccatgttcagtcattggcaggtc
R6783 T10539 T10532 punct ),ccatgttcagtcattggcaggtc
R6784 T10540 T10530 punct ", ",T1XF
R6785 T10541 T10530 conj T1XF2,T1XF
R6786 T10542 T10543 punct (,ctgcagaaccaacagttcaag
R6787 T10543 T10541 parataxis ctgcagaaccaacagttcaag,T1XF2
R6788 T10544 T10543 nummod 5,ctgcagaaccaacagttcaag
R6789 T10545 T10544 punct ',5
R6790 T10546 T10543 punct -,ctgcagaaccaacagttcaag
R6791 T10547 T10543 punct -,ctgcagaaccaacagttcaag
R6792 T10548 T10543 nummod 3,ctgcagaaccaacagttcaag
R6793 T10549 T10543 punct ',ctgcagaaccaacagttcaag
R6794 T10550 T10543 punct ),ctgcagaaccaacagttcaag
R6795 T10551 T10541 punct ", ",T1XF2
R6796 T10552 T10541 conj T1XR1,T1XF2
R6797 T10553 T10554 punct (,agatctgtgacatcacagctc
R6798 T10554 T10552 parataxis agatctgtgacatcacagctc,T1XR1
R6799 T10555 T10554 nummod 5,agatctgtgacatcacagctc
R6800 T10556 T10555 punct ',5
R6801 T10557 T10554 punct -,agatctgtgacatcacagctc
R6802 T10558 T10554 punct -,agatctgtgacatcacagctc
R6803 T10559 T10554 nummod 3,agatctgtgacatcacagctc
R6804 T10560 T10554 punct ',agatctgtgacatcacagctc
R6805 T10561 T10554 punct ),agatctgtgacatcacagctc
R6806 T10562 T10552 punct ", ",T1XR1
R6807 T10563 T10552 conj T1XR2,T1XR1
R6808 T10564 T10565 punct (,ctcgagtcagttagtcttatccagctt
R6809 T10565 T10563 parataxis ctcgagtcagttagtcttatccagctt,T1XR2
R6810 T10566 T10565 nummod 5,ctcgagtcagttagtcttatccagctt
R6811 T10567 T10566 punct ',5
R6812 T10568 T10565 punct -,ctcgagtcagttagtcttatccagctt
R6813 T10569 T10565 punct -,ctcgagtcagttagtcttatccagctt
R6814 T10570 T10565 nummod 3,ctcgagtcagttagtcttatccagctt
R6815 T10571 T10565 punct ',ctcgagtcagttagtcttatccagctt
R6816 T10572 T10565 punct ),ctcgagtcagttagtcttatccagctt
R6817 T10573 T10563 punct ", ",T1XR2
R6818 T10574 T10563 conj BB617F,T1XR2
R6819 T10575 T10576 punct (,accaccaacttgagtacctg
R6820 T10576 T10574 parataxis accaccaacttgagtacctg,BB617F
R6821 T10577 T10576 nummod 5,accaccaacttgagtacctg
R6822 T10578 T10577 punct ',5
R6823 T10579 T10576 punct -,accaccaacttgagtacctg
R6824 T10580 T10576 punct -,accaccaacttgagtacctg
R6825 T10581 T10576 nummod 3,accaccaacttgagtacctg
R6826 T10582 T10576 punct ',accaccaacttgagtacctg
R6827 T10583 T10576 punct ),accaccaacttgagtacctg
R6828 T10584 T10574 cc and,BB617F
R6829 T10585 T10574 conj BB617R,BB617F
R6830 T10586 T10587 punct (,gtatcttgaactgttggttctg
R6831 T10587 T10585 parataxis gtatcttgaactgttggttctg,BB617R
R6832 T10588 T10587 nummod 5,gtatcttgaactgttggttctg
R6833 T10589 T10588 punct ',5
R6834 T10590 T10587 punct -,gtatcttgaactgttggttctg
R6835 T10591 T10587 punct -,gtatcttgaactgttggttctg
R6836 T10592 T10587 nummod 3,gtatcttgaactgttggttctg
R6837 T10593 T10587 punct ',gtatcttgaactgttggttctg
R6838 T10594 T10587 punct ),gtatcttgaactgttggttctg
R6839 T10595 T10503 punct .,based
R6840 T10597 T10598 prep For,located
R6841 T10599 T10597 pobj analysis,For
R6842 T10600 T10599 prep of,analysis
R6843 T10601 T10602 compound TACC1,variants
R6844 T10602 T10600 pobj variants,of
R6845 T10603 T10602 compound splice,variants
R6846 T10604 T10598 punct ", ",located
R6847 T10605 T10606 det the,primers
R6848 T10606 T10598 nsubjpass primers,located
R6849 T10607 T10606 amod forward,primers
R6850 T10608 T10606 acl used,primers
R6851 T10609 T10598 auxpass were,located
R6852 T10610 T10598 prep in,located
R6853 T10611 T10610 pobj exon,in
R6854 T10612 T10611 nummod 1b,exon
R6855 T10613 T10611 punct : ,exon
R6856 T10614 T10615 dep EF,gagagatgcgaaatcagcg
R6857 T10615 T10611 parataxis gagagatgcgaaatcagcg,exon
R6858 T10616 T10615 punct (,gagagatgcgaaatcagcg
R6859 T10617 T10615 nummod 5,gagagatgcgaaatcagcg
R6860 T10618 T10617 punct ',5
R6861 T10619 T10615 punct -,gagagatgcgaaatcagcg
R6862 T10620 T10615 punct -,gagagatgcgaaatcagcg
R6863 T10621 T10615 nummod 3,gagagatgcgaaatcagcg
R6864 T10622 T10615 punct ',gagagatgcgaaatcagcg
R6865 T10623 T10615 punct ),gagagatgcgaaatcagcg
R6866 T10624 T10611 punct ", ",exon
R6867 T10625 T10611 appos Exon,exon
R6868 T10626 T10625 nummod 1d,Exon
R6869 T10627 T10625 punct : ,Exon
R6870 T10628 T10629 dep X3F,agtcaaagaaggcatctgcag
R6871 T10629 T10625 parataxis agtcaaagaaggcatctgcag,Exon
R6872 T10630 T10629 punct (,agtcaaagaaggcatctgcag
R6873 T10631 T10629 nummod 5,agtcaaagaaggcatctgcag
R6874 T10632 T10631 punct ',5
R6875 T10633 T10629 punct -,agtcaaagaaggcatctgcag
R6876 T10634 T10629 punct -,agtcaaagaaggcatctgcag
R6877 T10635 T10629 nummod 3,agtcaaagaaggcatctgcag
R6878 T10636 T10629 punct ',agtcaaagaaggcatctgcag
R6879 T10637 T10629 punct ),agtcaaagaaggcatctgcag
R6880 T10638 T10611 punct ", ",exon
R6881 T10639 T10611 appos Exon,exon
R6882 T10640 T10639 nummod 1a,Exon
R6883 T10641 T10639 punct : ,Exon
R6884 T10642 T10643 dep 1DF,ccaagttctgcgccatggg
R6885 T10643 T10639 parataxis ccaagttctgcgccatggg,Exon
R6886 T10644 T10643 punct (,ccaagttctgcgccatggg
R6887 T10645 T10643 nummod 5,ccaagttctgcgccatggg
R6888 T10646 T10645 punct ',5
R6889 T10647 T10643 punct -,ccaagttctgcgccatggg
R6890 T10648 T10643 punct -,ccaagttctgcgccatggg
R6891 T10649 T10643 nummod 3,ccaagttctgcgccatggg
R6892 T10650 T10643 punct ',ccaagttctgcgccatggg
R6893 T10651 T10643 punct ),ccaagttctgcgccatggg
R6894 T10652 T10598 punct .,located
R6895 T10654 T10655 det The,primers
R6896 T10655 T10657 nsubj primers,were
R6897 T10656 T10655 amod reverse,primers
R6898 T10658 T10655 acl used,primers
R6899 T10659 T10657 punct : ,were
R6900 T10660 T10657 attr Exon,were
R6901 T10661 T10660 nummod 1,Exon
R6902 T10662 T10660 punct : ,Exon
R6903 T10663 T10664 dep X1R,ggatttggtctcggcttgcgaatc
R6904 T10664 T10660 parataxis ggatttggtctcggcttgcgaatc,Exon
R6905 T10665 T10664 punct (,ggatttggtctcggcttgcgaatc
R6906 T10666 T10664 nummod 5,ggatttggtctcggcttgcgaatc
R6907 T10667 T10666 punct ',5
R6908 T10668 T10664 punct -,ggatttggtctcggcttgcgaatc
R6909 T10669 T10664 punct -,ggatttggtctcggcttgcgaatc
R6910 T10670 T10664 nummod 3,ggatttggtctcggcttgcgaatc
R6911 T10671 T10664 punct ',ggatttggtctcggcttgcgaatc
R6912 T10672 T10664 punct ),ggatttggtctcggcttgcgaatc
R6913 T10673 T10660 punct ", ",Exon
R6914 T10674 T10660 appos Exon,Exon
R6915 T10675 T10674 nummod 2,Exon
R6916 T10676 T10674 punct : ,Exon
R6917 T10677 T10678 dep BX647R,cttgtgattcttggcttttgg
R6918 T10678 T10674 parataxis cttgtgattcttggcttttgg,Exon
R6919 T10679 T10678 punct (,cttgtgattcttggcttttgg
R6920 T10680 T10678 nummod 5,cttgtgattcttggcttttgg
R6921 T10681 T10680 punct ',5
R6922 T10682 T10678 punct -,cttgtgattcttggcttttgg
R6923 T10683 T10678 punct -,cttgtgattcttggcttttgg
R6924 T10684 T10678 nummod 3,cttgtgattcttggcttttgg
R6925 T10685 T10678 punct ',cttgtgattcttggcttttgg
R6926 T10686 T10678 punct ),cttgtgattcttggcttttgg
R6927 T10687 T10660 punct ", ",Exon
R6928 T10688 T10660 appos Exon,Exon
R6929 T10689 T10688 nummod 3,Exon
R6930 T10690 T10688 punct : ,Exon
R6931 T10691 T10692 dep 6SPR,gtcatcgcctcgtcctggagggc
R6932 T10692 T10688 parataxis gtcatcgcctcgtcctggagggc,Exon
R6933 T10693 T10692 punct (,gtcatcgcctcgtcctggagggc
R6934 T10694 T10692 nummod 5,gtcatcgcctcgtcctggagggc
R6935 T10695 T10694 punct ',5
R6936 T10696 T10692 punct -,gtcatcgcctcgtcctggagggc
R6937 T10697 T10692 punct -,gtcatcgcctcgtcctggagggc
R6938 T10698 T10692 nummod 3,gtcatcgcctcgtcctggagggc
R6939 T10699 T10692 punct ',gtcatcgcctcgtcctggagggc
R6940 T10700 T10692 punct ),gtcatcgcctcgtcctggagggc
R6941 T10701 T10660 punct ", ",Exon
R6942 T10702 T10703 compound Exon,4a
R6943 T10703 T10660 appos 4a,Exon
R6944 T10704 T10703 punct : ,4a
R6945 T10705 T10706 dep 1DR,aatttcacttgttcagtagtc
R6946 T10706 T10703 parataxis aatttcacttgttcagtagtc,4a
R6947 T10707 T10706 punct (,aatttcacttgttcagtagtc
R6948 T10708 T10706 nummod 5,aatttcacttgttcagtagtc
R6949 T10709 T10708 punct ',5
R6950 T10710 T10706 punct -,aatttcacttgttcagtagtc
R6951 T10711 T10706 punct -,aatttcacttgttcagtagtc
R6952 T10712 T10706 nummod 3,aatttcacttgttcagtagtc
R6953 T10713 T10706 punct ',aatttcacttgttcagtagtc
R6954 T10714 T10706 punct ),aatttcacttgttcagtagtc
R6955 T10715 T10660 punct ", ",Exon
R6956 T10716 T10660 appos Exon,Exon
R6957 T10717 T10716 nummod 5,Exon
R6958 T10718 T10716 punct : ,Exon
R6959 T10719 T10720 dep 128R,cctgcttctgaggatgaaaacgc
R6960 T10720 T10716 parataxis cctgcttctgaggatgaaaacgc,Exon
R6961 T10721 T10720 punct (,cctgcttctgaggatgaaaacgc
R6962 T10722 T10720 nummod 5,cctgcttctgaggatgaaaacgc
R6963 T10723 T10722 punct ',5
R6964 T10724 T10720 punct -,cctgcttctgaggatgaaaacgc
R6965 T10725 T10720 punct -,cctgcttctgaggatgaaaacgc
R6966 T10726 T10720 nummod 3,cctgcttctgaggatgaaaacgc
R6967 T10727 T10720 punct ',cctgcttctgaggatgaaaacgc
R6968 T10728 T10720 punct ),cctgcttctgaggatgaaaacgc
R6969 T10729 T10657 punct .,were
R6970 T10731 T10732 compound Rabbit,brain
R6971 T10732 T10733 compound brain,mRNA
R6972 T10733 T10736 nsubjpass mRNA,obtained
R6973 T10734 T10733 compound poly,mRNA
R6974 T10735 T10733 compound A+,mRNA
R6975 T10737 T10733 punct ", ",mRNA
R6976 T10738 T10739 compound mouse,testis
R6977 T10739 T10733 conj testis,mRNA
R6978 T10740 T10739 cc and,testis
R6979 T10741 T10742 amod human,brain
R6980 T10742 T10743 nmod brain,RNA
R6981 T10743 T10739 conj RNA,testis
R6982 T10744 T10743 amod total,RNA
R6983 T10745 T10736 auxpass were,obtained
R6984 T10746 T10736 prep from,obtained
R6985 T10747 T10748 compound BD,Clontech
R6986 T10748 T10746 pobj Clontech,from
R6987 T10749 T10748 compound Bioscience,Clontech
R6988 T10750 T10748 punct (,Clontech
R6989 T10751 T10752 compound Palo,Alto
R6990 T10752 T10748 appos Alto,Clontech
R6991 T10753 T10752 punct ", ",Alto
R6992 T10754 T10752 npadvmod CA,Alto
R6993 T10755 T10752 punct ", ",Alto
R6994 T10756 T10752 npadvmod U.S.A.,Alto
R6995 T10757 T10748 punct ),Clontech
R6996 T10758 T10736 punct .,obtained
R6997 T10760 T10761 amod Reverse,transcription
R6998 T10761 T10762 nsubjpass transcription,performed
R6999 T10763 T10761 cc and,transcription
R7000 T10764 T10761 conj PCR,transcription
R7001 T10765 T10762 auxpass was,performed
R7002 T10766 T10767 mark as,described
R7003 T10767 T10762 advcl described,performed
R7004 T10768 T10767 advmod previously,described
R7005 T10769 T10762 punct ", ",performed
R7006 T10770 T10762 advcl using,performed
R7007 T10771 T10772 preconj either,μg
R7008 T10772 T10770 dobj μg,using
R7009 T10773 T10772 nummod 1,μg
R7010 T10774 T10772 prep of,μg
R7011 T10775 T10776 amod total,RNA
R7012 T10776 T10774 pobj RNA,of
R7013 T10777 T10772 cc or,μg
R7014 T10778 T10779 nummod 50,ng
R7015 T10779 T10772 conj ng,μg
R7016 T10780 T10779 prep of,ng
R7017 T10781 T10782 compound poly,A+
R7018 T10782 T10783 compound A+,mRNA
R7019 T10783 T10780 pobj mRNA,of
R7020 T10784 T10770 prep as,using
R7021 T10785 T10784 pobj template,as
R7022 T10786 T10785 prep for,template
R7023 T10787 T10788 amod first,strand
R7024 T10788 T10789 compound strand,cDNA
R7025 T10789 T10790 compound cDNA,synthesis
R7026 T10790 T10786 pobj synthesis,for
R7027 T10791 T10762 punct .,performed
R7028 T10793 T10794 compound PCR,products
R7029 T10794 T10795 nsubjpass products,cloned
R7030 T10796 T10795 auxpass were,cloned
R7031 T10797 T10795 prep into,cloned
R7032 T10798 T10797 pobj pCR2.1,into
R7033 T10799 T10800 punct (,Invitrogen
R7034 T10800 T10798 parataxis Invitrogen,pCR2.1
R7035 T10801 T10800 punct ", ",Invitrogen
R7036 T10802 T10800 npadvmod Carlsbad,Invitrogen
R7037 T10803 T10800 npadvmod CA,Invitrogen
R7038 T10804 T10800 punct ", ",Invitrogen
R7039 T10805 T10800 npadvmod U.S.A.,Invitrogen
R7040 T10806 T10800 punct ),Invitrogen
R7041 T10807 T10795 cc and,cloned
R7042 T10808 T10795 conj transformed,cloned
R7043 T10809 T10808 prep into,transformed
R7044 T10810 T10811 poss InvαF,competent
R7045 T10811 T10813 amod competent,cells
R7046 T10812 T10810 case ',InvαF
R7047 T10813 T10809 pobj cells,into
R7048 T10814 T10795 punct .,cloned
R7049 T10816 T10817 compound Plasmid,inserts
R7050 T10817 T10818 nsubjpass inserts,sequenced
R7051 T10819 T10818 auxpass were,sequenced
R7052 T10820 T10818 agent by,sequenced
R7053 T10821 T10822 det the,Facility
R7054 T10822 T10820 pobj Facility,by
R7055 T10823 T10824 compound Roswell,Park
R7056 T10824 T10825 compound Park,Institute
R7057 T10825 T10822 compound Institute,Facility
R7058 T10826 T10825 compound Cancer,Institute
R7059 T10827 T10828 compound Biopolymer,Core
R7060 T10828 T10822 compound Core,Facility
R7061 T10829 T10818 punct .,sequenced

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10382 0-7 SO_EXT:sequence_cloning_process denotes Cloning
T10383 11-21 NCBITaxon:7742 denotes vertebrate
T10384 27-32 SO_EXT:cDNA denotes cDNAs
T10385 37-43 NCBITaxon:9986 denotes rabbit
T10386 44-49 PR_EXT:000016008 denotes TACC3
T10387 54-60 SO_EXT:sequence_cloning_process denotes cloned
T10388 64-66 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes rt
T10389 98-104 SO_EXT:0000112 denotes primer
T10390 159-168 SO:0000993 denotes consensus
T10391 169-175 SO_EXT:0000112 denotes primer
T10392 225-235 NCBITaxon:7742 denotes vertebrate
T10393 236-241 PR_EXT:000016008 denotes TACC3
T10394 252-262 CHEBI_SO_EXT:methionine denotes methionine
T10395 302-309 SO_EXT:sequence_cloning_process denotes cloning
T10396 314-319 NCBITaxon:10088 denotes mouse
T10397 327-331 SO_EXT:cDNA denotes cDNA
T10398 337-344 SO_EXT:0000112 denotes primers
T10399 370-377 SO_EXT:0001026 denotes genomic
T10400 378-386 SO_EXT:biological_sequence denotes sequence
T10401 405-413 SO_EXT:biological_sequence denotes sequence
T10402 427-437 SO_EXT:0000317 denotes cDNA clone
T10403 700-705 PR_EXT:000016006 denotes TACC1
T10404 706-712 GO:0000380 denotes splice
T10405 706-721 SO_EXT:alternative_splice_variant denotes splice variants
T10406 727-742 SO_EXT:0000121 denotes forward primers
T10407 764-768 SO_EXT:0000147 denotes exon
T10408 805-809 SO_EXT:0000147 denotes Exon
T10409 849-853 SO_EXT:0000147 denotes Exon
T10410 895-910 SO_EXT:0000132 denotes reverse primers
T10411 922-926 SO_EXT:0000147 denotes Exon
T10412 968-972 SO_EXT:0000147 denotes Exon
T10413 1014-1018 SO_EXT:0000147 denotes Exon
T10414 1060-1064 SO_EXT:0000147 denotes Exon
T10415 1104-1108 SO_EXT:0000147 denotes Exon
T10416 1150-1156 NCBITaxon:9986 denotes Rabbit
T10417 1157-1162 UBERON:0000955 denotes brain
T10418 1163-1170 SO_EXT:0000610 denotes poly A+
T10419 1168-1169 CHEBI_EXT:adenine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes A
T10420 1171-1175 CHEBI_SO_EXT:mRNA denotes mRNA
T10421 1177-1182 NCBITaxon:10088 denotes mouse
T10422 1183-1189 UBERON:0000473 denotes testis
T10423 1194-1199 NCBITaxon:9606 denotes human
T10424 1200-1205 UBERON:0000955 denotes brain
T10425 1212-1215 CHEBI_SO_EXT:RNA denotes RNA
T10426 1283-1304 GO:0001171 denotes Reverse transcription
T10427 1379-1382 CHEBI_SO_EXT:RNA denotes RNA
T10428 1395-1402 SO_EXT:0000610 denotes poly A+
T10429 1400-1401 CHEBI_EXT:adenine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes A
T10430 1403-1407 CHEBI_SO_EXT:mRNA denotes mRNA
T10431 1437-1441 SO_EXT:cDNA denotes cDNA
T10432 1453-1465 SO_EXT:0000006 denotes PCR products
T10433 1471-1477 SO_EXT:sequence_cloning_process denotes cloned
T10434 1528-1539 GO:0009294 denotes transformed
T10435 1562-1567 CL_GO_EXT:cell denotes cells
T10436 1569-1576 SO_EXT:0000155 denotes Plasmid
T10437 1577-1584 SO_EXT:0000667 denotes inserts
T10438 1637-1647 CHEBI:33694 denotes Biopolymer

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10344 11-21 NCBITaxon:7742 denotes vertebrate
T10345 37-43 NCBITaxon:9986 denotes rabbit
T10346 44-49 PR:000016008 denotes TACC3
T10347 98-104 SO:0000112 denotes primer
T10348 159-168 SO:0000993 denotes consensus
T10349 169-175 SO:0000112 denotes primer
T10350 225-235 NCBITaxon:7742 denotes vertebrate
T10351 236-241 PR:000016008 denotes TACC3
T10352 314-319 NCBITaxon:10088 denotes mouse
T10353 337-344 SO:0000112 denotes primers
T10354 370-377 SO:0001026 denotes genomic
T10355 427-437 SO:0000317 denotes cDNA clone
T10356 700-705 PR:000016006 denotes TACC1
T10357 706-712 GO:0000380 denotes splice
T10358 727-742 SO:0000121 denotes forward primers
T10359 764-768 SO:0000147 denotes exon
T10360 805-809 SO:0000147 denotes Exon
T10361 849-853 SO:0000147 denotes Exon
T10362 895-910 SO:0000132 denotes reverse primers
T10363 922-926 SO:0000147 denotes Exon
T10364 968-972 SO:0000147 denotes Exon
T10365 1014-1018 SO:0000147 denotes Exon
T10366 1060-1064 SO:0000147 denotes Exon
T10367 1104-1108 SO:0000147 denotes Exon
T10368 1150-1156 NCBITaxon:9986 denotes Rabbit
T10369 1157-1162 UBERON:0000955 denotes brain
T10370 1163-1170 SO:0000610 denotes poly A+
T10371 1177-1182 NCBITaxon:10088 denotes mouse
T10372 1183-1189 UBERON:0000473 denotes testis
T10373 1194-1199 NCBITaxon:9606 denotes human
T10374 1200-1205 UBERON:0000955 denotes brain
T10375 1283-1304 GO:0001171 denotes Reverse transcription
T10376 1395-1402 SO:0000610 denotes poly A+
T10377 1453-1465 SO:0000006 denotes PCR products
T10378 1528-1539 GO:0009294 denotes transformed
T10379 1569-1576 SO:0000155 denotes Plasmid
T10380 1577-1584 SO:0000667 denotes inserts
T10381 1637-1647 CHEBI:33694 denotes Biopolymer

2_test

Id Subject Object Predicate Lexical cue
15207008-12015314-9666076 114-115 12015314 denotes 9