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PMC:441373 / 19164-20773 JSONTXT

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Id Subject Object Predicate Lexical cue
T4880 0-9 VBN denotes Conserved
T4881 21-29 NNS denotes clusters
T4882 10-20 JJ denotes paralogous
T4883 34-40 VB denotes result
T4884 30-33 MD denotes may
T4885 41-45 IN denotes from
T4886 46-49 DT denotes the
T4887 58-68 NN denotes clustering
T4888 50-57 JJ denotes initial
T4889 69-71 IN denotes of
T4890 72-75 DT denotes the
T4891 76-81 NNS denotes genes
T4892 82-84 IN denotes in
T4893 85-86 DT denotes a
T4894 122-128 NN denotes contig
T4895 87-97 RB denotes relatively
T4896 98-103 JJ denotes small
T4897 104-113 JJ denotes ancestral
T4898 114-121 JJ denotes genomic
T4899 128-129 . denotes .
T4900 129-335 sentence denotes Some evidence for the existence of "protoclusters" that could correspond to the paralogous chromosomal segments noted in higher vertebrates is present in the genome of the urochordate C. intestinalis [11].
T4901 130-134 DT denotes Some
T4902 135-143 NN denotes evidence
T4903 270-272 VBZ denotes is
T4904 144-147 IN denotes for
T4905 148-151 DT denotes the
T4906 152-161 NN denotes existence
T4907 162-164 IN denotes of
T4908 165-166 `` denotes "
T4909 166-179 NNS denotes protoclusters
T4910 179-180 '' denotes "
T4911 181-185 WDT denotes that
T4912 192-202 VB denotes correspond
T4913 186-191 MD denotes could
T4914 203-205 IN denotes to
T4915 206-209 DT denotes the
T4916 233-241 NNS denotes segments
T4917 210-220 JJ denotes paralogous
T4918 221-232 JJ denotes chromosomal
T4919 242-247 VBN denotes noted
T4920 248-250 IN denotes in
T4921 251-257 JJR denotes higher
T4922 258-269 NNS denotes vertebrates
T4923 273-280 JJ denotes present
T4924 281-283 IN denotes in
T4925 284-287 DT denotes the
T4926 288-294 NN denotes genome
T4927 295-297 IN denotes of
T4928 298-301 DT denotes the
T4929 302-313 NN denotes urochordate
T4930 314-316 NNP denotes C.
T4931 317-329 NNP denotes intestinalis
T4932 330-331 -LRB- denotes [
T4933 331-333 CD denotes 11
T4934 333-334 -RRB- denotes ]
T4935 334-335 . denotes .
T4936 335-603 sentence denotes For instance, the orthologues of FGFR, and WHSC1, carboxypeptidase Z and FLJ25359 cluster within an 85 kb region of the C. intestinalis genome and the human orthologues are still maintained in paralogous segments of 4p16, 8p and 10q (Fig. 3, [see Additional file 1]).
T4937 336-339 IN denotes For
T4938 418-425 VBP denotes cluster
T4939 340-348 NN denotes instance
T4940 348-350 , denotes ,
T4941 350-353 DT denotes the
T4942 354-365 NNS denotes orthologues
T4943 366-368 IN denotes of
T4944 369-373 NN denotes FGFR
T4945 373-375 , denotes ,
T4946 375-378 CC denotes and
T4947 379-384 NN denotes WHSC1
T4948 384-386 , denotes ,
T4949 386-402 NN denotes carboxypeptidase
T4950 403-404 NN denotes Z
T4951 405-408 CC denotes and
T4952 409-417 NN denotes FLJ25359
T4953 426-432 IN denotes within
T4954 433-435 DT denotes an
T4955 442-448 NN denotes region
T4956 436-438 CD denotes 85
T4957 439-441 NN denotes kb
T4958 449-451 IN denotes of
T4959 452-455 DT denotes the
T4960 472-478 NN denotes genome
T4961 456-458 NNP denotes C.
T4962 459-471 NNP denotes intestinalis
T4963 479-482 CC denotes and
T4964 483-486 DT denotes the
T4965 493-504 NNS denotes orthologues
T4966 487-492 JJ denotes human
T4967 515-525 VBN denotes maintained
T4968 505-508 VBP denotes are
T4969 509-514 RB denotes still
T4970 526-528 IN denotes in
T4971 529-539 JJ denotes paralogous
T4972 540-548 NNS denotes segments
T4973 549-551 IN denotes of
T4974 552-556 NN denotes 4p16
T4975 556-558 , denotes ,
T4976 558-560 NN denotes 8p
T4977 561-564 CC denotes and
T4978 565-568 NN denotes 10q
T4979 569-570 -LRB- denotes (
T4980 570-574 NN denotes Fig.
T4981 575-576 CD denotes 3
T4982 576-578 , denotes ,
T4983 578-579 -LRB- denotes [
T4984 579-582 VB denotes see
T4985 583-593 JJ denotes Additional
T4986 594-598 NN denotes file
T4987 599-600 CD denotes 1
T4988 600-601 -RRB- denotes ]
T4989 601-602 -RRB- denotes )
T4990 602-603 . denotes .
T4991 603-971 sentence denotes However, it should be noted that no clusters of genes from the vertebrate paralogous segments are locate close to the TACC or RHAMM genes of C. intestinalis, indicating that the formation of the much larger paralogous segments encompassing the FGFR-TACC genes formed later in evolutionary time, or conversely have been subject to extensive rearrangement in tunicates.
T4992 604-611 RB denotes However
T4993 626-631 VBN denotes noted
T4994 611-613 , denotes ,
T4995 613-615 PRP denotes it
T4996 616-622 MD denotes should
T4997 623-625 VB denotes be
T4998 632-636 IN denotes that
T4999 702-708 VBN denotes locate
T5000 637-639 DT denotes no
T5001 640-648 NNS denotes clusters
T5002 649-651 IN denotes of
T5003 652-657 NNS denotes genes
T5004 658-662 IN denotes from
T5005 663-666 DT denotes the
T5006 689-697 NNS denotes segments
T5007 667-677 NN denotes vertebrate
T5008 678-688 JJ denotes paralogous
T5009 698-701 VBP denotes are
T5010 709-714 RB denotes close
T5011 715-717 IN denotes to
T5012 718-721 DT denotes the
T5013 736-741 NNS denotes genes
T5014 722-726 NN denotes TACC
T5015 727-729 CC denotes or
T5016 730-735 NN denotes RHAMM
T5017 742-744 IN denotes of
T5018 745-747 NNP denotes C.
T5019 748-760 NNP denotes intestinalis
T5020 760-762 , denotes ,
T5021 762-772 VBG denotes indicating
T5022 773-777 IN denotes that
T5023 864-870 VBD denotes formed
T5024 778-781 DT denotes the
T5025 782-791 NN denotes formation
T5026 792-794 IN denotes of
T5027 795-798 DT denotes the
T5028 822-830 NNS denotes segments
T5029 799-803 RB denotes much
T5030 804-810 JJR denotes larger
T5031 811-821 JJ denotes paralogous
T5032 831-843 VBG denotes encompassing
T5033 844-847 DT denotes the
T5034 858-863 NNS denotes genes
T5035 848-852 NN denotes FGFR
T5036 853-857 NN denotes TACC
T5037 852-853 HYPH denotes -
T5038 871-876 RB denotes later
T5039 877-879 IN denotes in
T5040 880-892 JJ denotes evolutionary
T5041 893-897 NN denotes time
T5042 897-899 , denotes ,
T5043 899-901 CC denotes or
T5044 902-912 RB denotes conversely
T5045 918-922 VBN denotes been
T5046 913-917 VBP denotes have
T5047 923-930 JJ denotes subject
T5048 931-933 IN denotes to
T5049 934-943 JJ denotes extensive
T5050 944-957 NN denotes rearrangement
T5051 958-960 IN denotes in
T5052 961-970 NNS denotes tunicates
T5053 970-971 . denotes .
T5054 971-1328 sentence denotes In combination with the examination of the T. rubripes genome, this also provides additional evidence that either the second round of duplication of the chromosomal segment that contained the FGFR3/4 ancestor did not include a TACC gene, or that such a gene was lost very early in vertebrate evolution, prior to the divergence of the Gnanthostome lineages.
T5055 972-974 IN denotes In
T5056 1045-1053 VBZ denotes provides
T5057 975-986 NN denotes combination
T5058 987-991 IN denotes with
T5059 992-995 DT denotes the
T5060 996-1007 NN denotes examination
T5061 1008-1010 IN denotes of
T5062 1011-1014 DT denotes the
T5063 1027-1033 NN denotes genome
T5064 1015-1017 NNP denotes T.
T5065 1018-1026 NNP denotes rubripes
T5066 1033-1035 , denotes ,
T5067 1035-1039 DT denotes this
T5068 1040-1044 RB denotes also
T5069 1054-1064 JJ denotes additional
T5070 1065-1073 NN denotes evidence
T5071 1074-1078 IN denotes that
T5072 1189-1196 VB denotes include
T5073 1079-1085 CC denotes either
T5074 1086-1089 DT denotes the
T5075 1097-1102 NN denotes round
T5076 1090-1096 JJ denotes second
T5077 1103-1105 IN denotes of
T5078 1106-1117 NN denotes duplication
T5079 1118-1120 IN denotes of
T5080 1121-1124 DT denotes the
T5081 1137-1144 NN denotes segment
T5082 1125-1136 JJ denotes chromosomal
T5083 1145-1149 WDT denotes that
T5084 1150-1159 VBD denotes contained
T5085 1160-1163 DT denotes the
T5086 1172-1180 NN denotes ancestor
T5087 1164-1169 NN denotes FGFR3
T5088 1169-1170 HYPH denotes /
T5089 1170-1171 CD denotes 4
T5090 1181-1184 VBD denotes did
T5091 1185-1188 RB denotes not
T5092 1197-1198 DT denotes a
T5093 1204-1208 NN denotes gene
T5094 1199-1203 NN denotes TACC
T5095 1208-1210 , denotes ,
T5096 1210-1212 CC denotes or
T5097 1213-1217 IN denotes that
T5098 1234-1238 VBN denotes lost
T5099 1218-1222 PDT denotes such
T5100 1225-1229 NN denotes gene
T5101 1223-1224 DT denotes a
T5102 1230-1233 VBD denotes was
T5103 1239-1243 RB denotes very
T5104 1244-1249 RB denotes early
T5105 1250-1252 IN denotes in
T5106 1253-1263 NN denotes vertebrate
T5107 1264-1273 NN denotes evolution
T5108 1273-1275 , denotes ,
T5109 1275-1280 RB denotes prior
T5110 1281-1283 IN denotes to
T5111 1284-1287 DT denotes the
T5112 1288-1298 NN denotes divergence
T5113 1299-1301 IN denotes of
T5114 1302-1305 DT denotes the
T5115 1319-1327 NNS denotes lineages
T5116 1306-1318 NNP denotes Gnanthostome
T5117 1327-1328 . denotes .
T5118 1328-1609 sentence denotes However, the final resolution of the initial evolution of these paralogous segment will await the sequencing of the amphioxus and lamprey genomes, which only have one FGFR gene, and therefore should only contain one copy of the other corresponding genes in this conserved segment.
T5119 1329-1336 RB denotes However
T5161 1563-1576 VBG denotes corresponding
T5162 1583-1585 IN denotes in
T5163 1586-1590 DT denotes this
T5164 1601-1608 NN denotes segment
T5165 1591-1600 VBN denotes conserved
T5166 1608-1609 . denotes .
T5120 1417-1422 VB denotes await
T5121 1336-1338 , denotes ,
T5122 1338-1341 DT denotes the
T5123 1348-1358 NN denotes resolution
T5124 1342-1347 JJ denotes final
T5125 1359-1361 IN denotes of
T5126 1362-1365 DT denotes the
T5127 1374-1383 NN denotes evolution
T5128 1366-1373 JJ denotes initial
T5129 1384-1386 IN denotes of
T5130 1387-1392 DT denotes these
T5131 1404-1411 NN denotes segment
T5132 1393-1403 JJ denotes paralogous
T5133 1412-1416 MD denotes will
T5134 1423-1426 DT denotes the
T5135 1427-1437 NN denotes sequencing
T5136 1438-1440 IN denotes of
T5137 1441-1444 DT denotes the
T5138 1467-1474 NNS denotes genomes
T5139 1445-1454 NN denotes amphioxus
T5140 1455-1458 CC denotes and
T5141 1459-1466 NN denotes lamprey
T5142 1474-1476 , denotes ,
T5143 1476-1481 WDT denotes which
T5144 1487-1491 VBP denotes have
T5145 1482-1486 RB denotes only
T5146 1492-1495 CD denotes one
T5147 1501-1505 NN denotes gene
T5148 1496-1500 NN denotes FGFR
T5149 1505-1507 , denotes ,
T5150 1507-1510 CC denotes and
T5151 1511-1520 RB denotes therefore
T5152 1533-1540 VB denotes contain
T5153 1521-1527 MD denotes should
T5154 1528-1532 RB denotes only
T5155 1541-1544 CD denotes one
T5156 1545-1549 NN denotes copy
T5157 1550-1552 IN denotes of
T5158 1553-1556 DT denotes the
T5159 1577-1582 NNS denotes genes
T5160 1557-1562 JJ denotes other
R3129 T4880 T4881 amod Conserved,clusters
R3130 T4881 T4883 nsubj clusters,result
R3131 T4882 T4881 amod paralogous,clusters
R3132 T4884 T4883 aux may,result
R3133 T4885 T4883 prep from,result
R3134 T4886 T4887 det the,clustering
R3135 T4887 T4885 pobj clustering,from
R3136 T4888 T4887 amod initial,clustering
R3137 T4889 T4887 prep of,clustering
R3138 T4890 T4891 det the,genes
R3139 T4891 T4889 pobj genes,of
R3140 T4892 T4887 prep in,clustering
R3141 T4893 T4894 det a,contig
R3142 T4894 T4892 pobj contig,in
R3143 T4895 T4896 advmod relatively,small
R3144 T4896 T4894 amod small,contig
R3145 T4897 T4894 amod ancestral,contig
R3146 T4898 T4894 amod genomic,contig
R3147 T4899 T4883 punct .,result
R3148 T4901 T4902 det Some,evidence
R3149 T4902 T4903 nsubj evidence,is
R3150 T4904 T4902 prep for,evidence
R3151 T4905 T4906 det the,existence
R3152 T4906 T4904 pobj existence,for
R3153 T4907 T4906 prep of,existence
R3154 T4908 T4909 punct """",protoclusters
R3155 T4909 T4907 pobj protoclusters,of
R3156 T4910 T4909 punct """",protoclusters
R3157 T4911 T4912 dep that,correspond
R3158 T4912 T4909 relcl correspond,protoclusters
R3159 T4913 T4912 aux could,correspond
R3160 T4914 T4912 prep to,correspond
R3161 T4915 T4916 det the,segments
R3162 T4916 T4914 pobj segments,to
R3163 T4917 T4916 amod paralogous,segments
R3164 T4918 T4916 amod chromosomal,segments
R3165 T4919 T4916 acl noted,segments
R3166 T4920 T4919 prep in,noted
R3167 T4921 T4922 amod higher,vertebrates
R3168 T4922 T4920 pobj vertebrates,in
R3169 T4923 T4903 acomp present,is
R3170 T4924 T4903 prep in,is
R3171 T4925 T4926 det the,genome
R3172 T4926 T4924 pobj genome,in
R3173 T4927 T4926 prep of,genome
R3174 T4928 T4929 det the,urochordate
R3175 T4929 T4927 pobj urochordate,of
R3176 T4930 T4931 compound C.,intestinalis
R3177 T4931 T4929 appos intestinalis,urochordate
R3178 T4932 T4933 punct [,11
R3179 T4933 T4903 parataxis 11,is
R3180 T4934 T4933 punct ],11
R3181 T4935 T4903 punct .,is
R3182 T4937 T4938 prep For,cluster
R3183 T4939 T4937 pobj instance,For
R3184 T4940 T4938 punct ", ",cluster
R3185 T4941 T4942 det the,orthologues
R3186 T4942 T4938 nsubj orthologues,cluster
R3187 T4943 T4942 prep of,orthologues
R3188 T4944 T4943 pobj FGFR,of
R3189 T4945 T4944 punct ", ",FGFR
R3190 T4946 T4944 cc and,FGFR
R3191 T4947 T4944 conj WHSC1,FGFR
R3192 T4948 T4942 punct ", ",orthologues
R3193 T4949 T4950 compound carboxypeptidase,Z
R3194 T4950 T4942 appos Z,orthologues
R3195 T4951 T4950 cc and,Z
R3196 T4952 T4950 conj FLJ25359,Z
R3197 T4953 T4938 prep within,cluster
R3198 T4954 T4955 det an,region
R3199 T4955 T4953 pobj region,within
R3200 T4956 T4957 nummod 85,kb
R3201 T4957 T4955 compound kb,region
R3202 T4958 T4955 prep of,region
R3203 T4959 T4960 det the,genome
R3204 T4960 T4958 pobj genome,of
R3205 T4961 T4962 compound C.,intestinalis
R3206 T4962 T4960 compound intestinalis,genome
R3207 T4963 T4938 cc and,cluster
R3208 T4964 T4965 det the,orthologues
R3209 T4965 T4967 nsubjpass orthologues,maintained
R3210 T4966 T4965 amod human,orthologues
R3211 T4967 T4938 conj maintained,cluster
R3212 T4968 T4967 auxpass are,maintained
R3213 T4969 T4967 advmod still,maintained
R3214 T4970 T4967 prep in,maintained
R3215 T4971 T4972 amod paralogous,segments
R3216 T4972 T4970 pobj segments,in
R3217 T4973 T4972 prep of,segments
R3218 T4974 T4973 pobj 4p16,of
R3219 T4975 T4974 punct ", ",4p16
R3220 T4976 T4974 conj 8p,4p16
R3221 T4977 T4976 cc and,8p
R3222 T4978 T4976 conj 10q,8p
R3223 T4979 T4980 punct (,Fig.
R3224 T4980 T4967 parataxis Fig.,maintained
R3225 T4981 T4980 nummod 3,Fig.
R3226 T4982 T4980 punct ", ",Fig.
R3227 T4983 T4980 punct [,Fig.
R3228 T4984 T4980 advcl see,Fig.
R3229 T4985 T4986 amod Additional,file
R3230 T4986 T4984 dobj file,see
R3231 T4987 T4986 nummod 1,file
R3232 T4988 T4980 punct ],Fig.
R3233 T4989 T4980 punct ),Fig.
R3234 T4990 T4938 punct .,cluster
R3235 T4992 T4993 advmod However,noted
R3236 T4994 T4993 punct ", ",noted
R3237 T4995 T4993 nsubjpass it,noted
R3238 T4996 T4993 aux should,noted
R3239 T4997 T4993 auxpass be,noted
R3240 T4998 T4999 mark that,locate
R3241 T4999 T4993 ccomp locate,noted
R3242 T5000 T5001 det no,clusters
R3243 T5001 T4999 nsubjpass clusters,locate
R3244 T5002 T5001 prep of,clusters
R3245 T5003 T5002 pobj genes,of
R3246 T5004 T5003 prep from,genes
R3247 T5005 T5006 det the,segments
R3248 T5006 T5004 pobj segments,from
R3249 T5007 T5006 nmod vertebrate,segments
R3250 T5008 T5006 amod paralogous,segments
R3251 T5009 T4999 auxpass are,locate
R3252 T5010 T4999 advmod close,locate
R3253 T5011 T5010 prep to,close
R3254 T5012 T5013 det the,genes
R3255 T5013 T5011 pobj genes,to
R3256 T5014 T5013 nmod TACC,genes
R3257 T5015 T5014 cc or,TACC
R3258 T5016 T5014 conj RHAMM,TACC
R3259 T5017 T5013 prep of,genes
R3260 T5018 T5019 compound C.,intestinalis
R3261 T5019 T5017 pobj intestinalis,of
R3262 T5020 T4999 punct ", ",locate
R3263 T5021 T4999 advcl indicating,locate
R3264 T5022 T5023 mark that,formed
R3265 T5023 T5021 ccomp formed,indicating
R3266 T5024 T5025 det the,formation
R3267 T5025 T5023 nsubj formation,formed
R3268 T5026 T5025 prep of,formation
R3269 T5027 T5028 det the,segments
R3270 T5028 T5026 pobj segments,of
R3271 T5029 T5030 advmod much,larger
R3272 T5030 T5028 amod larger,segments
R3273 T5031 T5028 amod paralogous,segments
R3274 T5032 T5028 acl encompassing,segments
R3275 T5033 T5034 det the,genes
R3276 T5034 T5032 dobj genes,encompassing
R3277 T5035 T5036 compound FGFR,TACC
R3278 T5036 T5034 compound TACC,genes
R3279 T5037 T5036 punct -,TACC
R3280 T5038 T5023 advmod later,formed
R3281 T5039 T5038 prep in,later
R3282 T5040 T5041 amod evolutionary,time
R3283 T5041 T5039 pobj time,in
R3284 T5042 T5023 punct ", ",formed
R3285 T5043 T5023 cc or,formed
R3286 T5044 T5045 advmod conversely,been
R3287 T5045 T5023 conj been,formed
R3288 T5046 T5045 aux have,been
R3289 T5047 T5045 acomp subject,been
R3290 T5048 T5047 prep to,subject
R3291 T5049 T5050 amod extensive,rearrangement
R3292 T5050 T5048 pobj rearrangement,to
R3293 T5051 T5045 prep in,been
R3294 T5052 T5051 pobj tunicates,in
R3295 T5053 T4993 punct .,noted
R3296 T5055 T5056 prep In,provides
R3297 T5057 T5055 pobj combination,In
R3298 T5058 T5057 prep with,combination
R3299 T5059 T5060 det the,examination
R3300 T5060 T5058 pobj examination,with
R3301 T5061 T5060 prep of,examination
R3302 T5062 T5063 det the,genome
R3303 T5063 T5061 pobj genome,of
R3304 T5064 T5065 compound T.,rubripes
R3305 T5065 T5063 compound rubripes,genome
R3306 T5066 T5056 punct ", ",provides
R3307 T5067 T5056 nsubj this,provides
R3308 T5068 T5056 advmod also,provides
R3309 T5069 T5070 amod additional,evidence
R3310 T5070 T5056 dobj evidence,provides
R3311 T5071 T5072 mark that,include
R3312 T5072 T5070 advcl include,evidence
R3313 T5073 T5072 preconj either,include
R3314 T5074 T5075 det the,round
R3315 T5075 T5072 nsubj round,include
R3316 T5076 T5075 amod second,round
R3317 T5077 T5075 prep of,round
R3318 T5078 T5077 pobj duplication,of
R3319 T5079 T5078 prep of,duplication
R3320 T5080 T5081 det the,segment
R3321 T5081 T5079 pobj segment,of
R3322 T5082 T5081 amod chromosomal,segment
R3323 T5083 T5084 dep that,contained
R3324 T5084 T5081 relcl contained,segment
R3325 T5085 T5086 det the,ancestor
R3326 T5086 T5084 dobj ancestor,contained
R3327 T5087 T5086 nmod FGFR3,ancestor
R3328 T5088 T5087 punct /,FGFR3
R3329 T5089 T5087 nummod 4,FGFR3
R3330 T5090 T5072 aux did,include
R3331 T5091 T5072 neg not,include
R3332 T5092 T5093 det a,gene
R3333 T5093 T5072 dobj gene,include
R3334 T5094 T5093 compound TACC,gene
R3335 T5095 T5072 punct ", ",include
R3336 T5096 T5072 cc or,include
R3337 T5097 T5098 mark that,lost
R3338 T5098 T5072 conj lost,include
R3339 T5099 T5100 predet such,gene
R3340 T5100 T5098 nsubjpass gene,lost
R3341 T5101 T5100 det a,gene
R3342 T5102 T5098 auxpass was,lost
R3343 T5103 T5104 advmod very,early
R3344 T5104 T5098 advmod early,lost
R3345 T5105 T5104 prep in,early
R3346 T5106 T5107 compound vertebrate,evolution
R3347 T5107 T5105 pobj evolution,in
R3348 T5108 T5098 punct ", ",lost
R3349 T5109 T5098 advmod prior,lost
R3350 T5110 T5109 prep to,prior
R3351 T5111 T5112 det the,divergence
R3352 T5112 T5110 pobj divergence,to
R3353 T5113 T5112 prep of,divergence
R3354 T5114 T5115 det the,lineages
R3355 T5115 T5113 pobj lineages,of
R3356 T5116 T5115 compound Gnanthostome,lineages
R3357 T5117 T5056 punct .,provides
R3358 T5119 T5120 advmod However,await
R3359 T5121 T5120 punct ", ",await
R3360 T5122 T5123 det the,resolution
R3361 T5123 T5120 nsubj resolution,await
R3362 T5124 T5123 amod final,resolution
R3398 T5160 T5159 amod other,genes
R3399 T5161 T5159 amod corresponding,genes
R3400 T5162 T5152 prep in,contain
R3401 T5163 T5164 det this,segment
R3402 T5164 T5162 pobj segment,in
R3403 T5165 T5164 amod conserved,segment
R3404 T5166 T5120 punct .,await
R3363 T5125 T5123 prep of,resolution
R3364 T5126 T5127 det the,evolution
R3365 T5127 T5125 pobj evolution,of
R3366 T5128 T5127 amod initial,evolution
R3367 T5129 T5127 prep of,evolution
R3368 T5130 T5131 det these,segment
R3369 T5131 T5129 pobj segment,of
R3370 T5132 T5131 amod paralogous,segment
R3371 T5133 T5120 aux will,await
R3372 T5134 T5135 det the,sequencing
R3373 T5135 T5120 dobj sequencing,await
R3374 T5136 T5135 prep of,sequencing
R3375 T5137 T5138 det the,genomes
R3376 T5138 T5136 pobj genomes,of
R3377 T5139 T5138 nmod amphioxus,genomes
R3378 T5140 T5139 cc and,amphioxus
R3379 T5141 T5139 conj lamprey,amphioxus
R3380 T5142 T5138 punct ", ",genomes
R3381 T5143 T5144 dep which,have
R3382 T5144 T5138 relcl have,genomes
R3383 T5145 T5144 advmod only,have
R3384 T5146 T5147 nummod one,gene
R3385 T5147 T5144 dobj gene,have
R3386 T5148 T5147 compound FGFR,gene
R3387 T5149 T5144 punct ", ",have
R3388 T5150 T5144 cc and,have
R3389 T5151 T5152 advmod therefore,contain
R3390 T5152 T5144 conj contain,have
R3391 T5153 T5152 aux should,contain
R3392 T5154 T5152 advmod only,contain
R3393 T5155 T5156 nummod one,copy
R3394 T5156 T5152 dobj copy,contain
R3395 T5157 T5156 prep of,copy
R3396 T5158 T5159 det the,genes
R3397 T5159 T5157 pobj genes,of

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4119 730-735 PR_EXT:000001856 denotes RHAMM
T4120 736-741 SO_EXT:0000704 denotes genes
T4121 745-760 NCBITaxon:7719 denotes C. intestinalis
T4122 811-830 SO_EXT:0000854 denotes paralogous segments
T4123 848-852 GO_PR_EXT:fibroblast_growth_factor_receptor denotes FGFR
T4124 858-863 SO_EXT:0000704 denotes genes
T4125 944-957 GO_SO_EXT:sequence_rearrangement_entity_or_process denotes rearrangement
T4126 961-970 NCBITaxon:7712 denotes tunicates
T4127 1015-1026 NCBITaxon:31033 denotes T. rubripes
T4128 1027-1033 SO_EXT:0001026 denotes genome
T4129 1106-1117 SO_EXT:sequence_duplication_entity_or_process denotes duplication
T4130 1125-1144 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal segment
T4131 1164-1169 PR_EXT:000001450 denotes FGFR3
T4132 1204-1208 SO_EXT:0000704 denotes gene
T4133 1225-1229 SO_EXT:0000704 denotes gene
T4134 1253-1263 NCBITaxon:7742 denotes vertebrate
T4135 1306-1318 NCBITaxon:61463 denotes Gnanthostome
T4136 1393-1411 SO_EXT:0000854 denotes paralogous segment
T4137 1445-1454 NCBITaxon:7737 denotes amphioxus
T4138 1459-1466 NCBITaxon:7745 denotes lamprey
T4139 1467-1474 SO_EXT:0001026 denotes genomes
T4140 1496-1500 GO_PR_EXT:fibroblast_growth_factor_receptor denotes FGFR
T4141 1501-1505 SO_EXT:0000704 denotes gene
T4142 1545-1549 SO_EXT:sequence_copy_entity denotes copy
T4143 1577-1582 SO_EXT:0000704 denotes genes
T4144 1591-1600 SO_EXT:biological_conservation_process_or_quality denotes conserved
T4093 0-9 SO_EXT:biological_conservation_process_or_quality denotes Conserved
T4094 10-20 SO:0000859 denotes paralogous
T4095 76-81 SO_EXT:0000704 denotes genes
T4096 114-121 SO_EXT:0001026 denotes genomic
T4097 122-128 SO_EXT:0000149 denotes contig
T4098 210-220 _FRAGMENT denotes paralogous
T4099 233-241 SO_EXT:0000854 denotes segments
T4100 221-241 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal segments
T4101 258-269 NCBITaxon:7742 denotes vertebrates
T4102 288-294 SO_EXT:0001026 denotes genome
T4103 302-313 NCBITaxon:7712 denotes urochordate
T4104 314-329 NCBITaxon:7719 denotes C. intestinalis
T4105 354-365 SO_EXT:0000855 denotes orthologues
T4106 369-373 GO_PR_EXT:fibroblast_growth_factor_receptor denotes FGFR
T4107 379-384 PR_EXT:000030426 denotes WHSC1
T4108 386-402 GO_EXT:0004180 denotes carboxypeptidase
T4109 386-404 PR_EXT:000005841 denotes carboxypeptidase Z
T4110 440-441 CHEBI_SO_EXT:base denotes b
T4111 456-471 NCBITaxon:7719 denotes C. intestinalis
T4112 472-478 SO_EXT:0001026 denotes genome
T4113 487-492 NCBITaxon:9606 denotes human
T4114 493-504 SO_EXT:0000855 denotes orthologues
T4115 529-548 SO_EXT:0000854 denotes paralogous segments
T4116 652-657 SO_EXT:0000704 denotes genes
T4117 667-677 NCBITaxon:7742 denotes vertebrate
T4118 678-697 SO_EXT:0000854 denotes paralogous segments
R2442 T4099 T4098 _lexicallyChainedTo segments,paralogous

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3909 10-20 SO:0000859 denotes paralogous
T3910 76-81 SO:0000704 denotes genes
T3911 114-121 SO:0001026 denotes genomic
T3912 122-128 SO:0000149 denotes contig
T3913 210-220 _FRAGMENT denotes paralogous
T3914 233-241 SO:0000854 denotes segments
T3915 258-269 NCBITaxon:7742 denotes vertebrates
T3916 288-294 SO:0001026 denotes genome
T3917 302-313 NCBITaxon:7712 denotes urochordate
T3918 314-329 NCBITaxon:7719 denotes C. intestinalis
T3919 354-365 SO:0000855 denotes orthologues
T3920 379-384 PR:000030426 denotes WHSC1
T3921 386-404 PR:000005841 denotes carboxypeptidase Z
T3922 456-471 NCBITaxon:7719 denotes C. intestinalis
T3923 472-478 SO:0001026 denotes genome
T3924 487-492 NCBITaxon:9606 denotes human
T3925 493-504 SO:0000855 denotes orthologues
T3926 529-548 SO:0000854 denotes paralogous segments
T3927 652-657 SO:0000704 denotes genes
T3928 667-677 NCBITaxon:7742 denotes vertebrate
T3929 678-697 SO:0000854 denotes paralogous segments
T3930 730-735 PR:000001856 denotes RHAMM
T3931 736-741 SO:0000704 denotes genes
T3932 745-760 NCBITaxon:7719 denotes C. intestinalis
T3933 811-830 SO:0000854 denotes paralogous segments
T3934 858-863 SO:0000704 denotes genes
T3935 961-970 NCBITaxon:7712 denotes tunicates
T3936 1015-1026 NCBITaxon:31033 denotes T. rubripes
T3937 1027-1033 SO:0001026 denotes genome
T3938 1164-1169 PR:000001450 denotes FGFR3
T3939 1204-1208 SO:0000704 denotes gene
T3940 1225-1229 SO:0000704 denotes gene
T3941 1253-1263 NCBITaxon:7742 denotes vertebrate
T3942 1306-1318 NCBITaxon:61463 denotes Gnanthostome
T3943 1393-1411 SO:0000854 denotes paralogous segment
T3944 1445-1454 NCBITaxon:7737 denotes amphioxus
T3945 1459-1466 NCBITaxon:7745 denotes lamprey
T3946 1467-1474 SO:0001026 denotes genomes
T3947 1501-1505 SO:0000704 denotes gene
T3948 1577-1582 SO:0000704 denotes genes
R2437 T3914 T3913 _lexicallyChainedTo segments,paralogous

2_test

Id Subject Object Predicate Lexical cue
15207008-12481130-9666004 331-333 12481130 denotes 11