> top > docs > PMC:441373 > spans > 10041-13162 > annotations

PMC:441373 / 10041-13162 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T2683 0-5 VBN denotes Based
T2684 82-84 VBZ denotes is
T2685 6-10 IN denotes upon
T2686 11-18 JJ denotes current
T2687 30-38 NN denotes analysis
T2688 19-29 JJ denotes functional
T2689 38-40 , denotes ,
T2690 40-43 DT denotes the
T2691 44-60 NN denotes characterization
T2692 61-63 IN denotes of
T2693 64-69 NN denotes TACC3
T2694 70-81 NNS denotes orthologues
T2695 85-91 JJ denotes likely
T2696 92-94 TO denotes to
T2697 95-97 VB denotes be
T2698 98-105 JJ denotes pivotal
T2699 106-108 IN denotes to
T2700 109-122 VBG denotes understanding
T2701 123-126 DT denotes the
T2702 127-135 NN denotes sequence
T2703 136-139 CC denotes and
T2704 140-150 JJ denotes functional
T2705 151-160 NN denotes evolution
T2706 161-163 IN denotes of
T2707 164-167 DT denotes the
T2708 178-184 NN denotes family
T2709 168-172 NN denotes TACC
T2710 173-177 NN denotes gene
T2711 184-185 . denotes .
T2712 185-314 sentence denotes As indicated below, the chromosomal region containing the TACC gene precursors was duplicated twice during vertebrate evolution.
T2713 186-188 IN denotes As
T2714 189-198 VBN denotes indicated
T2715 269-279 VBN denotes duplicated
T2716 199-204 RB denotes below
T2717 204-206 , denotes ,
T2718 206-209 DT denotes the
T2719 222-228 NN denotes region
T2720 210-221 JJ denotes chromosomal
T2721 229-239 VBG denotes containing
T2722 240-243 DT denotes the
T2723 254-264 NNS denotes precursors
T2724 244-248 NN denotes TACC
T2725 249-253 NN denotes gene
T2726 265-268 VBD denotes was
T2727 280-285 RB denotes twice
T2728 286-292 IN denotes during
T2729 293-303 NN denotes vertebrate
T2730 304-313 NN denotes evolution
T2731 313-314 . denotes .
T2732 314-586 sentence denotes Although the analysis of T. rubripes, rodents and humans so far suggests that the vertebrate TACC3 precursor was not included in the second round of genomic duplication, it could not be excluded that a TACC4 gene may have been lost during the evolution of these lineages.
T2733 315-323 IN denotes Although
T2734 379-387 VBZ denotes suggests
T2735 324-327 DT denotes the
T2736 328-336 NN denotes analysis
T2737 337-339 IN denotes of
T2738 340-342 NNP denotes T.
T2739 343-351 NNP denotes rubripes
T2740 351-353 , denotes ,
T2741 353-360 NNS denotes rodents
T2742 361-364 CC denotes and
T2743 365-371 NNS denotes humans
T2744 372-374 RB denotes so
T2745 375-378 RB denotes far
T2746 501-509 VBN denotes excluded
T2747 388-392 IN denotes that
T2748 432-440 VBN denotes included
T2749 393-396 DT denotes the
T2750 414-423 NN denotes precursor
T2751 397-407 NN denotes vertebrate
T2752 408-413 NN denotes TACC3
T2753 424-427 VBD denotes was
T2754 428-431 RB denotes not
T2755 441-443 IN denotes in
T2756 444-447 DT denotes the
T2757 455-460 NN denotes round
T2758 448-454 JJ denotes second
T2759 461-463 IN denotes of
T2760 464-471 JJ denotes genomic
T2761 472-483 NN denotes duplication
T2762 483-485 , denotes ,
T2763 485-487 PRP denotes it
T2764 488-493 MD denotes could
T2765 494-497 RB denotes not
T2766 498-500 VB denotes be
T2767 510-514 IN denotes that
T2768 542-546 VBN denotes lost
T2769 515-516 DT denotes a
T2770 523-527 NN denotes gene
T2771 517-522 NN denotes TACC4
T2772 528-531 MD denotes may
T2773 532-536 VB denotes have
T2774 537-541 VBN denotes been
T2775 547-553 IN denotes during
T2776 554-557 DT denotes the
T2777 558-567 NN denotes evolution
T2778 568-570 IN denotes of
T2779 571-576 DT denotes these
T2780 577-585 NNS denotes lineages
T2781 585-586 . denotes .
T2782 586-693 sentence denotes The cloning of a new member of the TACC family in Oryctolagus cuniculus has added to this controversy [9].
T2783 587-590 DT denotes The
T2784 591-598 NN denotes cloning
T2785 663-668 VBN denotes added
T2786 599-601 IN denotes of
T2787 602-603 DT denotes a
T2788 608-614 NN denotes member
T2789 604-607 JJ denotes new
T2790 615-617 IN denotes of
T2791 618-621 DT denotes the
T2792 627-633 NN denotes family
T2793 622-626 NN denotes TACC
T2794 634-636 IN denotes in
T2795 637-648 NNP denotes Oryctolagus
T2796 649-658 NNP denotes cuniculus
T2797 659-662 VBZ denotes has
T2798 669-671 IN denotes to
T2799 672-676 DT denotes this
T2800 677-688 NN denotes controversy
T2801 689-690 -LRB- denotes [
T2802 690-691 CD denotes 9
T2803 691-692 -RRB- denotes ]
T2804 692-693 . denotes .
T2805 693-787 sentence denotes Designated TACC4, the 1.5 kb cDNA was highly related, but proposed to be distinct from TACC3.
T2806 694-704 VBN denotes Designated
T2807 728-731 VBD denotes was
T2808 705-710 NN denotes TACC4
T2809 710-712 , denotes ,
T2810 712-715 DT denotes the
T2811 723-727 NN denotes cDNA
T2812 716-719 CD denotes 1.5
T2813 720-722 NN denotes kb
T2814 732-738 RB denotes highly
T2815 739-746 VBN denotes related
T2816 746-748 , denotes ,
T2817 748-751 CC denotes but
T2818 752-760 VBN denotes proposed
T2819 761-763 TO denotes to
T2820 764-766 VB denotes be
T2821 767-775 JJ denotes distinct
T2822 776-780 IN denotes from
T2823 781-786 NN denotes TACC3
T2824 786-787 . denotes .
T2825 787-929 sentence denotes However, Northern blot data suggested that this gene produces a single 2.3 kb transcript [9], indicating that the cloned cDNA was incomplete.
T2826 788-795 RB denotes However
T2827 816-825 VBD denotes suggested
T2828 795-797 , denotes ,
T2829 797-805 NNP denotes Northern
T2830 806-810 NN denotes blot
T2831 811-815 NNS denotes data
T2832 826-830 IN denotes that
T2833 841-849 VBZ denotes produces
T2834 831-835 DT denotes this
T2835 836-840 NN denotes gene
T2836 850-851 DT denotes a
T2837 866-876 NN denotes transcript
T2838 852-858 JJ denotes single
T2839 859-862 CD denotes 2.3
T2840 863-865 NN denotes kb
T2841 877-878 -LRB- denotes [
T2842 878-879 CD denotes 9
T2843 879-880 -RRB- denotes ]
T2844 880-882 , denotes ,
T2845 882-892 VBG denotes indicating
T2846 893-897 IN denotes that
T2847 914-917 VBD denotes was
T2848 898-901 DT denotes the
T2849 909-913 NN denotes cDNA
T2850 902-908 VBN denotes cloned
T2851 918-928 JJ denotes incomplete
T2852 928-929 . denotes .
T2853 929-1081 sentence denotes The degree of similarity to the published sequence of human and mouse TACC3 suggested to us that TACC4 actually represents a partial rabbit TACC3 cDNA.
T2854 930-933 DT denotes The
T2855 934-940 NN denotes degree
T2856 1006-1015 VBD denotes suggested
T2857 941-943 IN denotes of
T2858 944-954 NN denotes similarity
T2859 955-957 IN denotes to
T2860 958-961 DT denotes the
T2861 972-980 NN denotes sequence
T2862 962-971 VBN denotes published
T2863 981-983 IN denotes of
T2864 984-989 JJ denotes human
T2865 1000-1005 NN denotes TACC3
T2866 990-993 CC denotes and
T2867 994-999 NN denotes mouse
T2868 1016-1018 IN denotes to
T2869 1019-1021 PRP denotes us
T2870 1022-1026 IN denotes that
T2871 1042-1052 VBZ denotes represents
T2872 1027-1032 NN denotes TACC4
T2873 1033-1041 RB denotes actually
T2874 1053-1054 DT denotes a
T2875 1076-1080 NN denotes cDNA
T2876 1055-1062 JJ denotes partial
T2877 1063-1069 NN denotes rabbit
T2878 1070-1075 NN denotes TACC3
T2879 1080-1081 . denotes .
T2880 1081-1218 sentence denotes To test this hypothesis, we set out to clone the complete rabbit TACC3 sequence, based upon the known features of human and mouse TACC3.
T2881 1082-1084 TO denotes To
T2882 1085-1089 VB denotes test
T2883 1110-1113 VBD denotes set
T2884 1090-1094 DT denotes this
T2885 1095-1105 NN denotes hypothesis
T2886 1105-1107 , denotes ,
T2887 1107-1109 PRP denotes we
T2888 1114-1117 RP denotes out
T2889 1118-1120 TO denotes to
T2890 1121-1126 VB denotes clone
T2891 1127-1130 DT denotes the
T2892 1153-1161 NN denotes sequence
T2893 1131-1139 JJ denotes complete
T2894 1140-1146 NN denotes rabbit
T2895 1147-1152 NN denotes TACC3
T2896 1161-1163 , denotes ,
T2897 1163-1168 VBN denotes based
T2898 1169-1173 IN denotes upon
T2899 1174-1177 DT denotes the
T2900 1184-1192 NNS denotes features
T2901 1178-1183 JJ denotes known
T2902 1193-1195 IN denotes of
T2903 1196-1201 JJ denotes human
T2904 1212-1217 NN denotes TACC3
T2905 1202-1205 CC denotes and
T2906 1206-1211 NN denotes mouse
T2907 1217-1218 . denotes .
T2908 1218-1363 sentence denotes We have previously noted that the N-terminal and C-terminal regions of the human and mouse TACC3 proteins are highly conserved ([2], see below).
T2909 1219-1221 PRP denotes We
T2910 1238-1243 VBN denotes noted
T2911 1222-1226 VBP denotes have
T2912 1227-1237 RB denotes previously
T2913 1244-1248 IN denotes that
T2914 1325-1328 VBP denotes are
T2915 1249-1252 DT denotes the
T2916 1279-1286 NNS denotes regions
T2917 1253-1254 NN denotes N
T2918 1255-1263 JJ denotes terminal
T2919 1254-1255 HYPH denotes -
T2920 1264-1267 CC denotes and
T2921 1268-1269 NN denotes C
T2922 1270-1278 JJ denotes terminal
T2923 1269-1270 HYPH denotes -
T2924 1287-1289 IN denotes of
T2925 1290-1293 DT denotes the
T2926 1316-1324 NN denotes proteins
T2927 1294-1299 JJ denotes human
T2928 1300-1303 CC denotes and
T2929 1304-1309 NN denotes mouse
T2930 1310-1315 NN denotes TACC3
T2931 1329-1335 RB denotes highly
T2932 1336-1345 VBN denotes conserved
T2933 1346-1347 -LRB- denotes (
T2934 1348-1349 CD denotes 2
T2935 1347-1348 -LRB- denotes [
T2936 1349-1350 -RRB- denotes ]
T2937 1350-1352 , denotes ,
T2938 1352-1355 VBP denotes see
T2939 1356-1361 RB denotes below
T2940 1361-1362 -RRB- denotes )
T2941 1362-1363 . denotes .
T2942 1363-1626 sentence denotes Therefore, based upon the sequence identity between these genes, we designed a consensus oligonucleotide primer, T3con2, that would be suitable for the identification of the region containing the initiator methionine of the TACC3 cDNAs from primates and rodents.
T2943 1364-1373 RB denotes Therefore
T2944 1432-1440 VBD denotes designed
T2945 1373-1375 , denotes ,
T2946 1375-1380 VBN denotes based
T2947 1381-1385 IN denotes upon
T2948 1386-1389 DT denotes the
T2949 1399-1407 NN denotes identity
T2950 1390-1398 NN denotes sequence
T2951 1408-1415 IN denotes between
T2952 1416-1421 DT denotes these
T2953 1422-1427 NNS denotes genes
T2954 1427-1429 , denotes ,
T2955 1429-1431 PRP denotes we
T2956 1441-1442 DT denotes a
T2957 1469-1475 NN denotes primer
T2958 1443-1452 NN denotes consensus
T2959 1453-1468 NN denotes oligonucleotide
T2960 1475-1477 , denotes ,
T2961 1477-1483 NN denotes T3con2
T2962 1483-1485 , denotes ,
T2963 1485-1489 WDT denotes that
T2964 1496-1498 VB denotes be
T2965 1490-1495 MD denotes would
T2966 1499-1507 JJ denotes suitable
T2967 1508-1511 IN denotes for
T2968 1512-1515 DT denotes the
T2969 1516-1530 NN denotes identification
T2970 1531-1533 IN denotes of
T2971 1534-1537 DT denotes the
T2972 1538-1544 NN denotes region
T2973 1545-1555 VBG denotes containing
T2974 1556-1559 DT denotes the
T2975 1570-1580 NN denotes methionine
T2976 1560-1569 NN denotes initiator
T2977 1581-1583 IN denotes of
T2978 1584-1587 DT denotes the
T2979 1594-1599 NNS denotes cDNAs
T2980 1588-1593 NN denotes TACC3
T2981 1600-1604 IN denotes from
T2982 1605-1613 NNS denotes primates
T2983 1614-1617 CC denotes and
T2984 1618-1625 NNS denotes rodents
T2985 1625-1626 . denotes .
T2986 1626-1810 sentence denotes Using this primer, in combination with the TACC4-specific RACE primer (RACE2), initially used by Steadman et al [9], we isolated a 1.5 kb PCR product from rabbit brain cDNA by rt-PCR.
T2987 1627-1632 VBG denotes Using
T2988 1747-1755 VBN denotes isolated
T2989 1633-1637 DT denotes this
T2990 1638-1644 NN denotes primer
T2991 1644-1646 , denotes ,
T2992 1646-1648 IN denotes in
T2993 1649-1660 NN denotes combination
T2994 1661-1665 IN denotes with
T2995 1666-1669 DT denotes the
T2996 1690-1696 NN denotes primer
T2997 1670-1675 NN denotes TACC4
T2998 1676-1684 JJ denotes specific
T2999 1675-1676 HYPH denotes -
T3000 1685-1689 NN denotes RACE
T3001 1697-1698 -LRB- denotes (
T3002 1698-1703 NN denotes RACE2
T3003 1703-1704 -RRB- denotes )
T3004 1704-1706 , denotes ,
T3005 1706-1715 RB denotes initially
T3006 1716-1720 VBN denotes used
T3007 1721-1723 IN denotes by
T3008 1724-1732 NNP denotes Steadman
T3009 1733-1735 FW denotes et
T3010 1736-1738 FW denotes al
T3011 1739-1740 -LRB- denotes [
T3012 1740-1741 CD denotes 9
T3013 1741-1742 -RRB- denotes ]
T3014 1742-1744 , denotes ,
T3015 1744-1746 PRP denotes we
T3016 1756-1757 DT denotes a
T3017 1769-1776 NN denotes product
T3018 1758-1761 CD denotes 1.5
T3019 1762-1764 NN denotes kb
T3020 1765-1768 NN denotes PCR
T3021 1777-1781 IN denotes from
T3022 1782-1788 NN denotes rabbit
T3023 1795-1799 NN denotes cDNA
T3024 1789-1794 NN denotes brain
T3025 1800-1802 IN denotes by
T3026 1803-1805 NN denotes rt
T3027 1806-1809 NN denotes PCR
T3028 1805-1806 HYPH denotes -
T3029 1809-1810 . denotes .
T3030 1810-2009 sentence denotes In combination with 3'RACE, this generated a consensus cDNA of 2283 bp which corresponds to the transcript size of 2.3 kb detected by the "TACC4" sequence reported in Figure 4 of Steadman et al [9].
T3031 1811-1813 IN denotes In
T3032 1844-1853 VBD denotes generated
T3033 1814-1825 NN denotes combination
T3034 1826-1830 IN denotes with
T3035 1831-1832 CD denotes 3
T3036 1833-1837 NN denotes RACE
T3037 1832-1833 SYM denotes '
T3038 1837-1839 , denotes ,
T3039 1839-1843 DT denotes this
T3040 1854-1855 DT denotes a
T3041 1866-1870 NN denotes cDNA
T3042 1856-1865 NN denotes consensus
T3043 1871-1873 IN denotes of
T3044 1874-1878 CD denotes 2283
T3045 1879-1881 NN denotes bp
T3046 1882-1887 WDT denotes which
T3047 1888-1899 VBZ denotes corresponds
T3048 1900-1902 IN denotes to
T3049 1903-1906 DT denotes the
T3050 1918-1922 NN denotes size
T3051 1907-1917 NN denotes transcript
T3052 1923-1925 IN denotes of
T3053 1926-1929 CD denotes 2.3
T3054 1930-1932 NN denotes kb
T3055 1933-1941 VBN denotes detected
T3056 1942-1944 IN denotes by
T3057 1945-1948 DT denotes the
T3058 1957-1965 NN denotes sequence
T3059 1949-1950 `` denotes "
T3060 1950-1955 NN denotes TACC4
T3061 1955-1956 '' denotes "
T3062 1966-1974 VBN denotes reported
T3063 1975-1977 IN denotes in
T3064 1978-1984 NN denotes Figure
T3065 1985-1986 CD denotes 4
T3066 1987-1989 IN denotes of
T3067 1990-1998 NNP denotes Steadman
T3068 1999-2001 FW denotes et
T3069 2002-2004 FW denotes al
T3070 2005-2006 -LRB- denotes [
T3071 2006-2007 CD denotes 9
T3072 2007-2008 -RRB- denotes ]
T3073 2008-2009 . denotes .
T3074 2009-2341 sentence denotes Thus, while it remains possible that the "TACC4" sequence is an alternative splice product, or is the product of reduplication of the TACC3 gene (events that would be specific to the rabbit), the only transcript detected in rabbit RNA corresponds to the predicted transcript size of the TACC3 sequence that we have identified here.
T3075 2010-2014 RB denotes Thus
T3076 2245-2256 VBZ denotes corresponds
T3077 2014-2016 , denotes ,
T3078 2016-2021 IN denotes while
T3079 2025-2032 VBZ denotes remains
T3080 2022-2024 PRP denotes it
T3081 2033-2041 JJ denotes possible
T3082 2042-2046 IN denotes that
T3083 2068-2070 VBZ denotes is
T3084 2047-2050 DT denotes the
T3085 2059-2067 NN denotes sequence
T3086 2051-2052 `` denotes "
T3087 2052-2057 NN denotes TACC4
T3088 2057-2058 '' denotes "
T3089 2071-2073 DT denotes an
T3090 2093-2100 NN denotes product
T3091 2074-2085 JJ denotes alternative
T3092 2086-2092 NN denotes splice
T3093 2100-2102 , denotes ,
T3094 2102-2104 CC denotes or
T3095 2105-2107 VBZ denotes is
T3096 2108-2111 DT denotes the
T3097 2112-2119 NN denotes product
T3098 2120-2122 IN denotes of
T3099 2123-2136 NN denotes reduplication
T3100 2137-2139 IN denotes of
T3101 2140-2143 DT denotes the
T3102 2150-2154 NN denotes gene
T3103 2144-2149 NN denotes TACC3
T3104 2155-2156 -LRB- denotes (
T3105 2156-2162 NNS denotes events
T3106 2163-2167 WDT denotes that
T3107 2174-2176 VB denotes be
T3108 2168-2173 MD denotes would
T3109 2177-2185 JJ denotes specific
T3110 2186-2188 IN denotes to
T3111 2189-2192 DT denotes the
T3112 2193-2199 NN denotes rabbit
T3113 2199-2200 -RRB- denotes )
T3114 2200-2202 , denotes ,
T3115 2202-2205 DT denotes the
T3116 2211-2221 NN denotes transcript
T3117 2206-2210 JJ denotes only
T3118 2222-2230 VBN denotes detected
T3119 2231-2233 IN denotes in
T3120 2234-2240 NN denotes rabbit
T3121 2241-2244 NN denotes RNA
T3122 2257-2259 IN denotes to
T3123 2260-2263 DT denotes the
T3124 2285-2289 NN denotes size
T3125 2264-2273 VBN denotes predicted
T3126 2274-2284 NN denotes transcript
T3127 2290-2292 IN denotes of
T3128 2293-2296 DT denotes the
T3129 2303-2311 NN denotes sequence
T3130 2297-2302 NN denotes TACC3
T3131 2312-2316 WDT denotes that
T3132 2325-2335 VBN denotes identified
T3133 2317-2319 PRP denotes we
T3134 2320-2324 VBP denotes have
T3135 2336-2340 RB denotes here
T3136 2340-2341 . denotes .
T3137 2341-2644 sentence denotes Furthermore, the string of nucleotides found at the 5' end of the "TACC4" sequence is also found at the 5' ends of a number of cDNA sequences (e.g. U82468, NM_023500), that were isolated by 5'RACE, suggesting that they may correspond to an artefact of the 5'RACE methodology used in their construction.
T3138 2342-2353 RB denotes Furthermore
T3139 2433-2438 VBN denotes found
T3140 2353-2355 , denotes ,
T3141 2355-2358 DT denotes the
T3142 2359-2365 NN denotes string
T3143 2366-2368 IN denotes of
T3144 2369-2380 NNS denotes nucleotides
T3145 2381-2386 VBN denotes found
T3146 2387-2389 IN denotes at
T3147 2390-2393 DT denotes the
T3148 2397-2400 NN denotes end
T3149 2394-2395 CD denotes 5
T3150 2395-2396 SYM denotes '
T3151 2401-2403 IN denotes of
T3152 2404-2407 DT denotes the
T3153 2416-2424 NN denotes sequence
T3154 2408-2409 `` denotes "
T3155 2409-2414 NN denotes TACC4
T3156 2414-2415 '' denotes "
T3157 2425-2427 VBZ denotes is
T3158 2428-2432 RB denotes also
T3159 2439-2441 IN denotes at
T3160 2442-2445 DT denotes the
T3161 2449-2453 NNS denotes ends
T3162 2446-2447 CD denotes 5
T3163 2447-2448 SYM denotes '
T3164 2454-2456 IN denotes of
T3165 2457-2458 DT denotes a
T3166 2459-2465 NN denotes number
T3167 2466-2468 IN denotes of
T3168 2469-2473 NN denotes cDNA
T3169 2474-2483 NNS denotes sequences
T3170 2484-2485 -LRB- denotes (
T3171 2485-2489 FW denotes e.g.
T3172 2498-2507 NN denotes NM_023500
T3173 2490-2496 NN denotes U82468
T3174 2496-2498 , denotes ,
T3175 2507-2508 -RRB- denotes )
T3176 2508-2510 , denotes ,
T3177 2510-2514 WDT denotes that
T3178 2520-2528 VBN denotes isolated
T3179 2515-2519 VBD denotes were
T3180 2529-2531 IN denotes by
T3181 2532-2533 CD denotes 5
T3182 2534-2538 NN denotes RACE
T3183 2533-2534 SYM denotes '
T3184 2538-2540 , denotes ,
T3185 2540-2550 VBG denotes suggesting
T3186 2551-2555 IN denotes that
T3187 2565-2575 VB denotes correspond
T3188 2556-2560 PRP denotes they
T3189 2561-2564 MD denotes may
T3190 2576-2578 IN denotes to
T3191 2579-2581 DT denotes an
T3192 2582-2590 NN denotes artefact
T3193 2591-2593 IN denotes of
T3194 2594-2597 DT denotes the
T3195 2605-2616 NN denotes methodology
T3196 2598-2599 CD denotes 5
T3197 2599-2600 SYM denotes '
T3198 2600-2604 NN denotes RACE
T3199 2617-2621 VBN denotes used
T3200 2622-2624 IN denotes in
T3201 2625-2630 PRP$ denotes their
T3202 2631-2643 NN denotes construction
T3203 2643-2644 . denotes .
T3204 2644-3012 sentence denotes The rabbit "TACC4" and the rabbit TACC3 sequence that we have isolated are also found on the same branch of the TACC phylogenetic tree with the other TACC3 orthologues, including maskin (Xenopus laevis), and the newly identified TACC3 sequences in Rattus norvegus, Gallus gallus, Silurana tropicalis, Danio rerio and T. rubripes, reported in this manuscript (Fig. 1).
T3205 2645-2648 DT denotes The
T3206 2657-2662 NN denotes TACC4
T3207 2649-2655 NN denotes rabbit
T3208 2656-2657 `` denotes "
T3209 2725-2730 VBN denotes found
T3210 2662-2663 '' denotes "
T3211 2664-2667 CC denotes and
T3212 2668-2671 DT denotes the
T3213 2679-2684 NN denotes TACC3
T3214 2672-2678 NN denotes rabbit
T3215 2685-2693 NN denotes sequence
T3216 2694-2698 WDT denotes that
T3217 2707-2715 VBN denotes isolated
T3218 2699-2701 PRP denotes we
T3219 2702-2706 VBP denotes have
T3220 2716-2719 VBP denotes are
T3221 2720-2724 RB denotes also
T3222 2731-2733 IN denotes on
T3223 2734-2737 DT denotes the
T3224 2743-2749 NN denotes branch
T3225 2738-2742 JJ denotes same
T3226 2750-2752 IN denotes of
T3227 2753-2756 DT denotes the
T3228 2775-2779 NN denotes tree
T3229 2757-2761 NN denotes TACC
T3230 2762-2774 JJ denotes phylogenetic
T3231 2780-2784 IN denotes with
T3232 2785-2788 DT denotes the
T3233 2801-2812 NNS denotes orthologues
T3234 2789-2794 JJ denotes other
T3235 2795-2800 NN denotes TACC3
T3236 2812-2814 , denotes ,
T3237 2814-2823 VBG denotes including
T3238 2824-2830 NN denotes maskin
T3239 2831-2832 -LRB- denotes (
T3240 2832-2839 NNP denotes Xenopus
T3241 2840-2846 NNP denotes laevis
T3242 2846-2847 -RRB- denotes )
T3243 2847-2849 , denotes ,
T3244 2849-2852 CC denotes and
T3245 2853-2856 DT denotes the
T3246 2880-2889 NNS denotes sequences
T3247 2857-2862 RB denotes newly
T3248 2863-2873 VBN denotes identified
T3249 2874-2879 NN denotes TACC3
T3250 2890-2892 IN denotes in
T3251 2893-2899 NNP denotes Rattus
T3252 2900-2908 NNP denotes norvegus
T3253 2908-2910 , denotes ,
T3254 2910-2916 NNP denotes Gallus
T3255 2917-2923 NN denotes gallus
T3256 2923-2925 , denotes ,
T3257 2925-2933 NNP denotes Silurana
T3258 2934-2944 NNP denotes tropicalis
T3259 2944-2946 , denotes ,
T3260 2946-2951 NNP denotes Danio
T3261 2952-2957 NNP denotes rerio
T3262 2958-2961 CC denotes and
T3263 2962-2964 NNP denotes T.
T3264 2965-2973 NNP denotes rubripes
T3265 2973-2975 , denotes ,
T3266 2975-2983 VBN denotes reported
T3267 2984-2986 IN denotes in
T3268 2987-2991 DT denotes this
T3269 2992-3002 NN denotes manuscript
T3270 3003-3004 -LRB- denotes (
T3271 3004-3008 NN denotes Fig.
T3272 3009-3010 CD denotes 1
T3273 3010-3011 -RRB- denotes )
T3274 3011-3012 . denotes .
T3275 3012-3121 sentence denotes Thus, it is not in a separate branch that may be expected if the sequence was a distinct TACC family member.
T3276 3013-3017 RB denotes Thus
T3277 3022-3024 VBZ denotes is
T3278 3017-3019 , denotes ,
T3279 3019-3021 PRP denotes it
T3280 3025-3028 RB denotes not
T3281 3029-3031 IN denotes in
T3282 3032-3033 DT denotes a
T3283 3043-3049 NN denotes branch
T3284 3034-3042 JJ denotes separate
T3285 3050-3054 WDT denotes that
T3286 3062-3070 VBN denotes expected
T3287 3055-3058 MD denotes may
T3288 3059-3061 VB denotes be
T3289 3071-3073 IN denotes if
T3290 3087-3090 VBD denotes was
T3291 3074-3077 DT denotes the
T3292 3078-3086 NN denotes sequence
T3293 3091-3092 DT denotes a
T3294 3114-3120 NN denotes member
T3295 3093-3101 JJ denotes distinct
T3296 3102-3106 NN denotes TACC
T3297 3107-3113 NN denotes family
T3298 3120-3121 . denotes .
R1591 T2683 T2684 prep Based,is
R1592 T2685 T2683 prep upon,Based
R1593 T2686 T2687 amod current,analysis
R1594 T2687 T2685 pobj analysis,upon
R1595 T2688 T2687 amod functional,analysis
R1596 T2689 T2684 punct ", ",is
R1597 T2690 T2691 det the,characterization
R1598 T2691 T2684 nsubj characterization,is
R1599 T2692 T2691 prep of,characterization
R1600 T2693 T2694 compound TACC3,orthologues
R1601 T2694 T2692 pobj orthologues,of
R1602 T2695 T2684 acomp likely,is
R1603 T2696 T2697 aux to,be
R1604 T2697 T2695 xcomp be,likely
R1605 T2698 T2697 acomp pivotal,be
R1606 T2699 T2698 prep to,pivotal
R1607 T2700 T2699 pcomp understanding,to
R1608 T2701 T2702 det the,sequence
R1609 T2702 T2700 dobj sequence,understanding
R1610 T2703 T2702 cc and,sequence
R1611 T2704 T2705 amod functional,evolution
R1612 T2705 T2702 conj evolution,sequence
R1613 T2706 T2702 prep of,sequence
R1614 T2707 T2708 det the,family
R1615 T2708 T2706 pobj family,of
R1616 T2709 T2708 compound TACC,family
R1617 T2710 T2708 compound gene,family
R1618 T2711 T2684 punct .,is
R1619 T2713 T2714 mark As,indicated
R1620 T2714 T2715 advcl indicated,duplicated
R1621 T2716 T2714 advmod below,indicated
R1622 T2717 T2715 punct ", ",duplicated
R1623 T2718 T2719 det the,region
R1624 T2719 T2715 nsubjpass region,duplicated
R1625 T2720 T2719 amod chromosomal,region
R1626 T2721 T2719 acl containing,region
R1627 T2722 T2723 det the,precursors
R1628 T2723 T2721 dobj precursors,containing
R1629 T2724 T2725 compound TACC,gene
R1630 T2725 T2723 compound gene,precursors
R1631 T2726 T2715 auxpass was,duplicated
R1632 T2727 T2715 advmod twice,duplicated
R1633 T2728 T2715 prep during,duplicated
R1634 T2729 T2730 compound vertebrate,evolution
R1635 T2730 T2728 pobj evolution,during
R1636 T2731 T2715 punct .,duplicated
R1637 T2733 T2734 mark Although,suggests
R1638 T2734 T2746 advcl suggests,excluded
R1639 T2735 T2736 det the,analysis
R1640 T2736 T2734 nsubj analysis,suggests
R1641 T2737 T2736 prep of,analysis
R1642 T2738 T2739 compound T.,rubripes
R1643 T2739 T2737 pobj rubripes,of
R1644 T2740 T2739 punct ", ",rubripes
R1645 T2741 T2739 conj rodents,rubripes
R1646 T2742 T2741 cc and,rodents
R1647 T2743 T2741 conj humans,rodents
R1648 T2744 T2745 advmod so,far
R1649 T2745 T2734 advmod far,suggests
R1650 T2747 T2748 mark that,included
R1651 T2748 T2734 ccomp included,suggests
R1652 T2749 T2750 det the,precursor
R1653 T2750 T2748 nsubjpass precursor,included
R1654 T2751 T2750 compound vertebrate,precursor
R1655 T2752 T2750 compound TACC3,precursor
R1656 T2753 T2748 auxpass was,included
R1657 T2754 T2748 neg not,included
R1658 T2755 T2748 prep in,included
R1659 T2756 T2757 det the,round
R1660 T2757 T2755 pobj round,in
R1661 T2758 T2757 amod second,round
R1662 T2759 T2757 prep of,round
R1663 T2760 T2761 amod genomic,duplication
R1664 T2761 T2759 pobj duplication,of
R1665 T2762 T2746 punct ", ",excluded
R1666 T2763 T2746 nsubjpass it,excluded
R1667 T2764 T2746 aux could,excluded
R1668 T2765 T2746 neg not,excluded
R1669 T2766 T2746 auxpass be,excluded
R1670 T2767 T2768 mark that,lost
R1671 T2768 T2746 ccomp lost,excluded
R1672 T2769 T2770 det a,gene
R1673 T2770 T2768 nsubjpass gene,lost
R1674 T2771 T2770 compound TACC4,gene
R1675 T2772 T2768 aux may,lost
R1676 T2773 T2768 aux have,lost
R1677 T2774 T2768 auxpass been,lost
R1678 T2775 T2768 prep during,lost
R1679 T2776 T2777 det the,evolution
R1680 T2777 T2775 pobj evolution,during
R1681 T2778 T2777 prep of,evolution
R1682 T2779 T2780 det these,lineages
R1683 T2780 T2778 pobj lineages,of
R1684 T2781 T2746 punct .,excluded
R1685 T2783 T2784 det The,cloning
R1686 T2784 T2785 nsubj cloning,added
R1687 T2786 T2784 prep of,cloning
R1688 T2787 T2788 det a,member
R1689 T2788 T2786 pobj member,of
R1690 T2789 T2788 amod new,member
R1691 T2790 T2788 prep of,member
R1692 T2791 T2792 det the,family
R1693 T2792 T2790 pobj family,of
R1694 T2793 T2792 compound TACC,family
R1695 T2794 T2784 prep in,cloning
R1696 T2795 T2796 compound Oryctolagus,cuniculus
R1697 T2796 T2794 pobj cuniculus,in
R1698 T2797 T2785 aux has,added
R1699 T2798 T2785 prep to,added
R1700 T2799 T2800 det this,controversy
R1701 T2800 T2798 pobj controversy,to
R1702 T2801 T2802 punct [,9
R1703 T2802 T2785 parataxis 9,added
R1704 T2803 T2802 punct ],9
R1705 T2804 T2785 punct .,added
R1706 T2806 T2807 advcl Designated,was
R1707 T2808 T2806 oprd TACC4,Designated
R1708 T2809 T2807 punct ", ",was
R1709 T2810 T2811 det the,cDNA
R1710 T2811 T2807 nsubj cDNA,was
R1711 T2812 T2813 nummod 1.5,kb
R1712 T2813 T2811 compound kb,cDNA
R1713 T2814 T2815 advmod highly,related
R1714 T2815 T2807 acomp related,was
R1715 T2816 T2815 punct ", ",related
R1716 T2817 T2815 cc but,related
R1717 T2818 T2815 conj proposed,related
R1718 T2819 T2820 aux to,be
R1719 T2820 T2818 xcomp be,proposed
R1720 T2821 T2820 acomp distinct,be
R1721 T2822 T2821 prep from,distinct
R1722 T2823 T2822 pobj TACC3,from
R1723 T2824 T2807 punct .,was
R1724 T2826 T2827 advmod However,suggested
R1725 T2828 T2827 punct ", ",suggested
R1726 T2829 T2830 compound Northern,blot
R1727 T2830 T2831 compound blot,data
R1728 T2831 T2827 nsubj data,suggested
R1729 T2832 T2833 mark that,produces
R1730 T2833 T2827 ccomp produces,suggested
R1731 T2834 T2835 det this,gene
R1732 T2835 T2833 nsubj gene,produces
R1733 T2836 T2837 det a,transcript
R1734 T2837 T2833 dobj transcript,produces
R1735 T2838 T2837 amod single,transcript
R1736 T2839 T2840 nummod 2.3,kb
R1737 T2840 T2837 compound kb,transcript
R1738 T2841 T2842 punct [,9
R1739 T2842 T2833 parataxis 9,produces
R1740 T2843 T2842 punct ],9
R1741 T2844 T2833 punct ", ",produces
R1742 T2845 T2833 advcl indicating,produces
R1743 T2846 T2847 mark that,was
R1744 T2847 T2845 ccomp was,indicating
R1745 T2848 T2849 det the,cDNA
R1746 T2849 T2847 nsubj cDNA,was
R1747 T2850 T2849 amod cloned,cDNA
R1748 T2851 T2847 acomp incomplete,was
R1749 T2852 T2827 punct .,suggested
R1750 T2854 T2855 det The,degree
R1751 T2855 T2856 nsubj degree,suggested
R1752 T2857 T2855 prep of,degree
R1753 T2858 T2857 pobj similarity,of
R1754 T2859 T2858 prep to,similarity
R1755 T2860 T2861 det the,sequence
R1756 T2861 T2859 pobj sequence,to
R1757 T2862 T2861 amod published,sequence
R1758 T2863 T2861 prep of,sequence
R1759 T2864 T2865 amod human,TACC3
R1760 T2865 T2863 pobj TACC3,of
R1761 T2866 T2864 cc and,human
R1762 T2867 T2864 conj mouse,human
R1763 T2868 T2856 prep to,suggested
R1764 T2869 T2868 pobj us,to
R1765 T2870 T2871 mark that,represents
R1766 T2871 T2856 ccomp represents,suggested
R1767 T2872 T2871 nsubj TACC4,represents
R1768 T2873 T2871 advmod actually,represents
R1769 T2874 T2875 det a,cDNA
R1770 T2875 T2871 dobj cDNA,represents
R1771 T2876 T2875 amod partial,cDNA
R1772 T2877 T2875 compound rabbit,cDNA
R1773 T2878 T2875 compound TACC3,cDNA
R1774 T2879 T2856 punct .,suggested
R1775 T2881 T2882 aux To,test
R1776 T2882 T2883 advcl test,set
R1777 T2884 T2885 det this,hypothesis
R1778 T2885 T2882 dobj hypothesis,test
R1779 T2886 T2883 punct ", ",set
R1780 T2887 T2883 nsubj we,set
R1781 T2888 T2883 prt out,set
R1782 T2889 T2890 aux to,clone
R1783 T2890 T2883 xcomp clone,set
R1784 T2891 T2892 det the,sequence
R1785 T2892 T2890 dobj sequence,clone
R1786 T2893 T2892 amod complete,sequence
R1787 T2894 T2892 compound rabbit,sequence
R1788 T2895 T2892 compound TACC3,sequence
R1789 T2896 T2890 punct ", ",clone
R1790 T2897 T2890 prep based,clone
R1791 T2898 T2897 prep upon,based
R1792 T2899 T2900 det the,features
R1793 T2900 T2898 pobj features,upon
R1794 T2901 T2900 amod known,features
R1795 T2902 T2900 prep of,features
R1796 T2903 T2904 amod human,TACC3
R1797 T2904 T2902 pobj TACC3,of
R1798 T2905 T2903 cc and,human
R1799 T2906 T2903 conj mouse,human
R1800 T2907 T2883 punct .,set
R1801 T2909 T2910 nsubj We,noted
R1802 T2911 T2910 aux have,noted
R1803 T2912 T2910 advmod previously,noted
R1804 T2913 T2914 mark that,are
R1805 T2914 T2910 ccomp are,noted
R1806 T2915 T2916 det the,regions
R1807 T2916 T2914 nsubj regions,are
R1808 T2917 T2918 npadvmod N,terminal
R1809 T2918 T2916 amod terminal,regions
R1810 T2919 T2918 punct -,terminal
R1811 T2920 T2918 cc and,terminal
R1812 T2921 T2922 npadvmod C,terminal
R1813 T2922 T2918 conj terminal,terminal
R1814 T2923 T2922 punct -,terminal
R1815 T2924 T2916 prep of,regions
R1816 T2925 T2926 det the,proteins
R1817 T2926 T2924 pobj proteins,of
R1818 T2927 T2926 amod human,proteins
R1819 T2928 T2927 cc and,human
R1820 T2929 T2927 conj mouse,human
R1821 T2930 T2926 compound TACC3,proteins
R1822 T2931 T2932 advmod highly,conserved
R1823 T2932 T2914 acomp conserved,are
R1824 T2933 T2934 punct (,2
R1825 T2934 T2910 parataxis 2,noted
R1826 T2935 T2934 punct [,2
R1827 T2936 T2934 punct ],2
R1828 T2937 T2934 punct ", ",2
R1829 T2938 T2934 advcl see,2
R1830 T2939 T2938 advmod below,see
R1831 T2940 T2934 punct ),2
R1832 T2941 T2910 punct .,noted
R1833 T2943 T2944 advmod Therefore,designed
R1834 T2945 T2944 punct ", ",designed
R1835 T2946 T2944 prep based,designed
R1836 T2947 T2946 prep upon,based
R1837 T2948 T2949 det the,identity
R1838 T2949 T2947 pobj identity,upon
R1839 T2950 T2949 compound sequence,identity
R1840 T2951 T2949 prep between,identity
R1841 T2952 T2953 det these,genes
R1842 T2953 T2951 pobj genes,between
R1843 T2954 T2944 punct ", ",designed
R1844 T2955 T2944 nsubj we,designed
R1845 T2956 T2957 det a,primer
R1846 T2957 T2944 dobj primer,designed
R1847 T2958 T2957 compound consensus,primer
R1848 T2959 T2957 compound oligonucleotide,primer
R1849 T2960 T2957 punct ", ",primer
R1850 T2961 T2957 appos T3con2,primer
R1851 T2962 T2957 punct ", ",primer
R1852 T2963 T2964 dep that,be
R1853 T2964 T2957 relcl be,primer
R1854 T2965 T2964 aux would,be
R1855 T2966 T2964 acomp suitable,be
R1856 T2967 T2966 prep for,suitable
R1857 T2968 T2969 det the,identification
R1858 T2969 T2967 pobj identification,for
R1859 T2970 T2969 prep of,identification
R1860 T2971 T2972 det the,region
R1861 T2972 T2970 pobj region,of
R1862 T2973 T2972 acl containing,region
R1863 T2974 T2975 det the,methionine
R1864 T2975 T2973 dobj methionine,containing
R1865 T2976 T2975 compound initiator,methionine
R1866 T2977 T2975 prep of,methionine
R1867 T2978 T2979 det the,cDNAs
R1868 T2979 T2977 pobj cDNAs,of
R1869 T2980 T2979 compound TACC3,cDNAs
R1870 T2981 T2979 prep from,cDNAs
R1871 T2982 T2981 pobj primates,from
R1872 T2983 T2982 cc and,primates
R1873 T2984 T2982 conj rodents,primates
R1874 T2985 T2944 punct .,designed
R1875 T2987 T2988 advcl Using,isolated
R1876 T2989 T2990 det this,primer
R1877 T2990 T2987 dobj primer,Using
R1878 T2991 T2987 punct ", ",Using
R1879 T2992 T2987 prep in,Using
R1880 T2993 T2992 pobj combination,in
R1881 T2994 T2993 prep with,combination
R1882 T2995 T2996 det the,primer
R1883 T2996 T2994 pobj primer,with
R1884 T2997 T2998 npadvmod TACC4,specific
R1885 T2998 T2996 amod specific,primer
R1886 T2999 T2998 punct -,specific
R1887 T3000 T2996 compound RACE,primer
R1888 T3001 T2996 punct (,primer
R1889 T3002 T2996 appos RACE2,primer
R1890 T3003 T2996 punct ),primer
R1891 T3004 T2996 punct ", ",primer
R1892 T3005 T3006 advmod initially,used
R1893 T3006 T2996 acl used,primer
R1894 T3007 T3006 agent by,used
R1895 T3008 T3007 pobj Steadman,by
R1896 T3009 T3010 advmod et,al
R1897 T3010 T3008 advmod al,Steadman
R1898 T3011 T3012 punct [,9
R1899 T3012 T3006 parataxis 9,used
R1900 T3013 T3012 punct ],9
R1901 T3014 T2988 punct ", ",isolated
R1902 T3015 T2988 nsubj we,isolated
R1903 T3016 T3017 det a,product
R1904 T3017 T2988 dobj product,isolated
R1905 T3018 T3019 nummod 1.5,kb
R1906 T3019 T3020 compound kb,PCR
R1907 T3020 T3017 compound PCR,product
R1908 T3021 T2988 prep from,isolated
R1909 T3022 T3023 compound rabbit,cDNA
R1910 T3023 T3021 pobj cDNA,from
R1911 T3024 T3023 compound brain,cDNA
R1912 T3025 T2988 prep by,isolated
R1913 T3026 T3027 compound rt,PCR
R1914 T3027 T3025 pobj PCR,by
R1915 T3028 T3027 punct -,PCR
R1916 T3029 T2988 punct .,isolated
R1917 T3031 T3032 prep In,generated
R1918 T3033 T3031 pobj combination,In
R1919 T3034 T3033 prep with,combination
R1920 T3035 T3036 nummod 3,RACE
R1921 T3036 T3034 pobj RACE,with
R1922 T3037 T3035 punct ',3
R1923 T3038 T3032 punct ", ",generated
R1924 T3039 T3032 nsubj this,generated
R1925 T3040 T3041 det a,cDNA
R1926 T3041 T3032 dobj cDNA,generated
R1927 T3042 T3041 compound consensus,cDNA
R1928 T3043 T3041 prep of,cDNA
R1929 T3044 T3045 nummod 2283,bp
R1930 T3045 T3043 pobj bp,of
R1931 T3046 T3047 dep which,corresponds
R1932 T3047 T3041 relcl corresponds,cDNA
R1933 T3048 T3047 prep to,corresponds
R1934 T3049 T3050 det the,size
R1935 T3050 T3048 pobj size,to
R1936 T3051 T3050 compound transcript,size
R1937 T3052 T3050 prep of,size
R1938 T3053 T3054 nummod 2.3,kb
R1939 T3054 T3052 pobj kb,of
R1940 T3055 T3050 acl detected,size
R1941 T3056 T3055 prep by,detected
R1942 T3057 T3058 det the,sequence
R1943 T3058 T3056 pobj sequence,by
R1944 T3059 T3058 punct """",sequence
R1945 T3060 T3058 nmod TACC4,sequence
R1946 T3061 T3058 punct """",sequence
R1947 T3062 T3058 acl reported,sequence
R1948 T3063 T3062 prep in,reported
R1949 T3064 T3063 pobj Figure,in
R1950 T3065 T3064 nummod 4,Figure
R1951 T3066 T3064 prep of,Figure
R1952 T3067 T3066 pobj Steadman,of
R1953 T3068 T3069 advmod et,al
R1954 T3069 T3067 advmod al,Steadman
R1955 T3070 T3071 punct [,9
R1956 T3071 T3062 parataxis 9,reported
R1957 T3072 T3071 punct ],9
R1958 T3073 T3032 punct .,generated
R1959 T3075 T3076 advmod Thus,corresponds
R1960 T3077 T3076 punct ", ",corresponds
R1961 T3078 T3079 mark while,remains
R1962 T3079 T3076 advcl remains,corresponds
R1963 T3080 T3079 nsubj it,remains
R1964 T3081 T3079 oprd possible,remains
R1965 T3082 T3083 mark that,is
R1966 T3083 T3079 ccomp is,remains
R1967 T3084 T3085 det the,sequence
R1968 T3085 T3083 nsubj sequence,is
R1969 T3086 T3085 punct """",sequence
R1970 T3087 T3085 nmod TACC4,sequence
R1971 T3088 T3085 punct """",sequence
R1972 T3089 T3090 det an,product
R1973 T3090 T3083 attr product,is
R1974 T3091 T3090 amod alternative,product
R1975 T3092 T3090 compound splice,product
R1976 T3093 T3083 punct ", ",is
R1977 T3094 T3083 cc or,is
R1978 T3095 T3083 conj is,is
R1979 T3096 T3097 det the,product
R1980 T3097 T3095 attr product,is
R1981 T3098 T3097 prep of,product
R1982 T3099 T3098 pobj reduplication,of
R1983 T3100 T3099 prep of,reduplication
R1984 T3101 T3102 det the,gene
R1985 T3102 T3100 pobj gene,of
R1986 T3103 T3102 compound TACC3,gene
R1987 T3104 T3105 punct (,events
R1988 T3105 T3095 parataxis events,is
R1989 T3106 T3107 dep that,be
R1990 T3107 T3105 relcl be,events
R1991 T3108 T3107 aux would,be
R1992 T3109 T3107 acomp specific,be
R1993 T3110 T3109 prep to,specific
R1994 T3111 T3112 det the,rabbit
R1995 T3112 T3110 pobj rabbit,to
R1996 T3113 T3105 punct ),events
R1997 T3114 T3076 punct ", ",corresponds
R1998 T3115 T3116 det the,transcript
R1999 T3116 T3076 nsubj transcript,corresponds
R2000 T3117 T3116 amod only,transcript
R2001 T3118 T3116 acl detected,transcript
R2002 T3119 T3118 prep in,detected
R2003 T3120 T3121 compound rabbit,RNA
R2004 T3121 T3119 pobj RNA,in
R2005 T3122 T3076 prep to,corresponds
R2006 T3123 T3124 det the,size
R2007 T3124 T3122 pobj size,to
R2008 T3125 T3124 amod predicted,size
R2009 T3126 T3124 compound transcript,size
R2010 T3127 T3124 prep of,size
R2011 T3128 T3129 det the,sequence
R2012 T3129 T3127 pobj sequence,of
R2013 T3130 T3129 compound TACC3,sequence
R2014 T3131 T3132 dep that,identified
R2015 T3132 T3124 relcl identified,size
R2016 T3133 T3132 nsubj we,identified
R2017 T3134 T3132 aux have,identified
R2018 T3135 T3132 advmod here,identified
R2019 T3136 T3076 punct .,corresponds
R2020 T3138 T3139 advmod Furthermore,found
R2021 T3140 T3139 punct ", ",found
R2022 T3141 T3142 det the,string
R2023 T3142 T3139 nsubjpass string,found
R2024 T3143 T3142 prep of,string
R2025 T3144 T3143 pobj nucleotides,of
R2026 T3145 T3144 acl found,nucleotides
R2027 T3146 T3145 prep at,found
R2028 T3147 T3148 det the,end
R2029 T3148 T3146 pobj end,at
R2030 T3149 T3148 nummod 5,end
R2031 T3150 T3149 punct ',5
R2032 T3151 T3148 prep of,end
R2033 T3152 T3153 det the,sequence
R2034 T3153 T3151 pobj sequence,of
R2035 T3154 T3153 punct """",sequence
R2036 T3155 T3153 nmod TACC4,sequence
R2037 T3156 T3153 punct """",sequence
R2038 T3157 T3139 auxpass is,found
R2039 T3158 T3139 advmod also,found
R2040 T3159 T3139 prep at,found
R2041 T3160 T3161 det the,ends
R2042 T3161 T3159 pobj ends,at
R2043 T3162 T3161 nummod 5,ends
R2044 T3163 T3162 punct ',5
R2045 T3164 T3161 prep of,ends
R2046 T3165 T3166 det a,number
R2047 T3166 T3164 pobj number,of
R2048 T3167 T3166 prep of,number
R2049 T3168 T3169 compound cDNA,sequences
R2050 T3169 T3167 pobj sequences,of
R2051 T3170 T3169 punct (,sequences
R2052 T3171 T3172 advmod e.g.,NM_023500
R2053 T3172 T3169 appos NM_023500,sequences
R2054 T3173 T3172 nmod U82468,NM_023500
R2055 T3174 T3172 punct ", ",NM_023500
R2056 T3175 T3169 punct ),sequences
R2057 T3176 T3169 punct ", ",sequences
R2058 T3177 T3178 dep that,isolated
R2059 T3178 T3169 relcl isolated,sequences
R2060 T3179 T3178 auxpass were,isolated
R2061 T3180 T3178 agent by,isolated
R2062 T3181 T3182 nummod 5,RACE
R2063 T3182 T3180 pobj RACE,by
R2064 T3183 T3181 punct ',5
R2065 T3184 T3139 punct ", ",found
R2066 T3185 T3139 advcl suggesting,found
R2067 T3186 T3187 mark that,correspond
R2068 T3187 T3185 ccomp correspond,suggesting
R2069 T3188 T3187 nsubj they,correspond
R2070 T3189 T3187 aux may,correspond
R2071 T3190 T3187 prep to,correspond
R2072 T3191 T3192 det an,artefact
R2073 T3192 T3190 pobj artefact,to
R2074 T3193 T3192 prep of,artefact
R2075 T3194 T3195 det the,methodology
R2076 T3195 T3193 pobj methodology,of
R2077 T3196 T3195 nummod 5,methodology
R2078 T3197 T3196 punct ',5
R2079 T3198 T3195 compound RACE,methodology
R2080 T3199 T3195 acl used,methodology
R2081 T3200 T3199 prep in,used
R2082 T3201 T3202 poss their,construction
R2083 T3202 T3200 pobj construction,in
R2084 T3203 T3139 punct .,found
R2085 T3205 T3206 det The,TACC4
R2086 T3206 T3209 nsubjpass TACC4,found
R2087 T3207 T3206 nmod rabbit,TACC4
R2088 T3208 T3206 punct """",TACC4
R2089 T3210 T3206 punct """",TACC4
R2090 T3211 T3206 cc and,TACC4
R2091 T3212 T3213 det the,TACC3
R2092 T3213 T3215 compound TACC3,sequence
R2093 T3214 T3213 compound rabbit,TACC3
R2094 T3215 T3206 conj sequence,TACC4
R2095 T3216 T3217 dep that,isolated
R2096 T3217 T3206 relcl isolated,TACC4
R2097 T3218 T3217 nsubj we,isolated
R2098 T3219 T3217 aux have,isolated
R2099 T3220 T3209 auxpass are,found
R2100 T3221 T3209 advmod also,found
R2101 T3222 T3209 prep on,found
R2102 T3223 T3224 det the,branch
R2103 T3224 T3222 pobj branch,on
R2104 T3225 T3224 amod same,branch
R2105 T3226 T3224 prep of,branch
R2106 T3227 T3228 det the,tree
R2107 T3228 T3226 pobj tree,of
R2108 T3229 T3228 nmod TACC,tree
R2109 T3230 T3228 amod phylogenetic,tree
R2110 T3231 T3209 prep with,found
R2111 T3232 T3233 det the,orthologues
R2112 T3233 T3231 pobj orthologues,with
R2113 T3234 T3233 amod other,orthologues
R2114 T3235 T3233 compound TACC3,orthologues
R2115 T3236 T3233 punct ", ",orthologues
R2116 T3237 T3233 prep including,orthologues
R2117 T3238 T3237 pobj maskin,including
R2118 T3239 T3238 punct (,maskin
R2119 T3240 T3241 compound Xenopus,laevis
R2120 T3241 T3238 appos laevis,maskin
R2121 T3242 T3238 punct ),maskin
R2122 T3243 T3238 punct ", ",maskin
R2123 T3244 T3238 cc and,maskin
R2124 T3245 T3246 det the,sequences
R2125 T3246 T3238 conj sequences,maskin
R2126 T3247 T3248 advmod newly,identified
R2127 T3248 T3246 amod identified,sequences
R2128 T3249 T3246 compound TACC3,sequences
R2129 T3250 T3246 prep in,sequences
R2130 T3251 T3252 compound Rattus,norvegus
R2131 T3252 T3250 pobj norvegus,in
R2132 T3253 T3252 punct ", ",norvegus
R2133 T3254 T3255 compound Gallus,gallus
R2134 T3255 T3252 conj gallus,norvegus
R2135 T3256 T3255 punct ", ",gallus
R2136 T3257 T3258 compound Silurana,tropicalis
R2137 T3258 T3255 conj tropicalis,gallus
R2138 T3259 T3258 punct ", ",tropicalis
R2139 T3260 T3261 compound Danio,rerio
R2140 T3261 T3258 conj rerio,tropicalis
R2141 T3262 T3261 cc and,rerio
R2142 T3263 T3264 compound T.,rubripes
R2143 T3264 T3261 conj rubripes,rerio
R2144 T3265 T3246 punct ", ",sequences
R2145 T3266 T3246 acl reported,sequences
R2146 T3267 T3266 prep in,reported
R2147 T3268 T3269 det this,manuscript
R2148 T3269 T3267 pobj manuscript,in
R2149 T3270 T3271 punct (,Fig.
R2150 T3271 T3209 parataxis Fig.,found
R2151 T3272 T3271 nummod 1,Fig.
R2152 T3273 T3271 punct ),Fig.
R2153 T3274 T3209 punct .,found
R2154 T3276 T3277 advmod Thus,is
R2155 T3278 T3277 punct ", ",is
R2156 T3279 T3277 nsubj it,is
R2157 T3280 T3277 neg not,is
R2158 T3281 T3277 prep in,is
R2159 T3282 T3283 det a,branch
R2160 T3283 T3281 pobj branch,in
R2161 T3284 T3283 amod separate,branch
R2162 T3285 T3286 dep that,expected
R2163 T3286 T3283 relcl expected,branch
R2164 T3287 T3286 aux may,expected
R2165 T3288 T3286 auxpass be,expected
R2166 T3289 T3290 mark if,was
R2167 T3290 T3277 advcl was,is
R2168 T3291 T3292 det the,sequence
R2169 T3292 T3290 nsubj sequence,was
R2170 T3293 T3294 det a,member
R2171 T3294 T3290 attr member,was
R2172 T3295 T3294 amod distinct,member
R2173 T3296 T3294 compound TACC,member
R2174 T3297 T3294 compound family,member
R2175 T3298 T3277 punct .,is

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2574 64-69 PR_EXT:000016008 denotes TACC3
T2575 70-81 SO_EXT:0000855 denotes orthologues
T2576 127-135 SO_EXT:biological_sequence denotes sequence
T2577 173-177 SO_EXT:0000704 denotes gene
T2578 210-228 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomal region
T2579 249-253 SO_EXT:0000704 denotes gene
T2580 269-279 SO_EXT:sequence_duplication_process denotes duplicated
T2581 293-303 NCBITaxon:7742 denotes vertebrate
T2582 340-351 NCBITaxon:31033 denotes T. rubripes
T2583 353-360 NCBITaxon:9989 denotes rodents
T2584 365-371 NCBITaxon:9606 denotes humans
T2585 397-407 NCBITaxon:7742 denotes vertebrate
T2586 408-413 PR_EXT:000016008 denotes TACC3
T2587 464-471 SO_EXT:0001026 denotes genomic
T2588 472-483 SO_EXT:sequence_duplication_entity_or_process denotes duplication
T2589 523-527 SO_EXT:0000704 denotes gene
T2590 591-598 SO_EXT:sequence_cloning_process denotes cloning
T2591 637-658 NCBITaxon:9986 denotes Oryctolagus cuniculus
T2592 721-722 CHEBI_SO_EXT:base denotes b
T2593 723-727 SO_EXT:cDNA denotes cDNA
T2594 781-786 PR_EXT:000016008 denotes TACC3
T2595 836-840 SO_EXT:0000704 denotes gene
T2596 864-865 CHEBI_SO_EXT:base denotes b
T2597 866-876 SO_EXT:0000673 denotes transcript
T2598 902-908 SO_EXT:sequence_cloning_process denotes cloned
T2599 909-913 SO_EXT:cDNA denotes cDNA
T2600 972-980 SO_EXT:biological_sequence denotes sequence
T2601 984-989 NCBITaxon:9606 denotes human
T2602 994-999 NCBITaxon:10088 denotes mouse
T2603 1000-1005 PR_EXT:000016008 denotes TACC3
T2604 1063-1069 NCBITaxon:9986 denotes rabbit
T2605 1070-1075 PR_EXT:000016008 denotes TACC3
T2606 1076-1080 SO_EXT:cDNA denotes cDNA
T2607 1121-1126 SO_EXT:sequence_cloning_process denotes clone
T2608 1140-1146 NCBITaxon:9986 denotes rabbit
T2609 1147-1152 PR_EXT:000016008 denotes TACC3
T2610 1153-1161 SO_EXT:biological_sequence denotes sequence
T2611 1196-1201 NCBITaxon:9606 denotes human
T2612 1206-1211 NCBITaxon:10088 denotes mouse
T2613 1212-1217 PR_EXT:000016008 denotes TACC3
T2614 1253-1263 CHEBI_SO_EXT:N_terminus_or_N_terminal_region denotes N-terminal
T2615 1268-1278 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminal
T2616 1294-1299 NCBITaxon:9606 denotes human
T2617 1304-1309 NCBITaxon:10088 denotes mouse
T2618 1310-1315 PR_EXT:000016008 denotes TACC3
T2619 1316-1324 CHEBI_PR_EXT:protein denotes proteins
T2620 1336-1345 SO_EXT:biological_conservation_process_or_quality denotes conserved
T2621 1390-1398 SO_EXT:biological_sequence denotes sequence
T2622 1422-1427 SO_EXT:0000704 denotes genes
T2623 1443-1452 SO:0000993 denotes consensus
T2624 1453-1468 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotide
T2625 1469-1475 SO_EXT:0000112 denotes primer
T2626 1570-1580 CHEBI_SO_EXT:methionine denotes methionine
T2627 1588-1593 PR_EXT:000016008 denotes TACC3
T2628 1594-1599 SO_EXT:cDNA denotes cDNAs
T2629 1605-1613 NCBITaxon:9443 denotes primates
T2630 1618-1625 NCBITaxon:9989 denotes rodents
T2631 1638-1644 SO_EXT:0000112 denotes primer
T2632 1690-1696 SO_EXT:0000112 denotes primer
T2633 1763-1764 CHEBI_SO_EXT:base denotes b
T2634 1765-1776 SO_EXT:0000006 denotes PCR product
T2635 1782-1788 NCBITaxon:9986 denotes rabbit
T2636 1789-1794 UBERON:0000955 denotes brain
T2637 1795-1799 SO_EXT:cDNA denotes cDNA
T2638 1803-1805 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes rt
T2639 1856-1865 SO:0000993 denotes consensus
T2640 1866-1870 SO_EXT:cDNA denotes cDNA
T2641 1879-1881 SO_EXT:0000028 denotes bp
T2642 1907-1917 SO_EXT:0000673 denotes transcript
T2643 1931-1932 CHEBI_SO_EXT:base denotes b
T2644 1957-1965 SO_EXT:biological_sequence denotes sequence
T2645 2059-2067 SO_EXT:biological_sequence denotes sequence
T2646 2074-2092 GO:0000380 denotes alternative splice
T2647 2074-2100 SO_EXT:alternative_splice_variant denotes alternative splice product
T2648 2125-2136 SO_EXT:sequence_duplication_entity_or_process denotes duplication
T2649 2144-2149 PR_EXT:000016008 denotes TACC3
T2650 2150-2154 SO_EXT:0000704 denotes gene
T2651 2193-2199 NCBITaxon:9986 denotes rabbit
T2652 2211-2221 SO_EXT:0000673 denotes transcript
T2653 2234-2240 NCBITaxon:9986 denotes rabbit
T2654 2241-2244 CHEBI_SO_EXT:RNA denotes RNA
T2655 2264-2284 SO_EXT:0002138 denotes predicted transcript
T2656 2297-2302 PR_EXT:000016008 denotes TACC3
T2657 2303-2311 SO_EXT:biological_sequence denotes sequence
T2658 2369-2380 CHEBI_SO_EXT:nucleotide denotes nucleotides
T2659 2416-2424 SO_EXT:biological_sequence denotes sequence
T2660 2469-2473 SO_EXT:cDNA denotes cDNA
T2661 2474-2483 SO_EXT:biological_sequence denotes sequences
T2662 2649-2655 NCBITaxon:9986 denotes rabbit
T2663 2672-2678 NCBITaxon:9986 denotes rabbit
T2664 2679-2684 PR_EXT:000016008 denotes TACC3
T2665 2685-2693 SO_EXT:biological_sequence denotes sequence
T2666 2795-2800 PR_EXT:000016008 denotes TACC3
T2667 2801-2812 SO_EXT:0000855 denotes orthologues
T2668 2832-2846 NCBITaxon:8355 denotes Xenopus laevis
T2669 2874-2879 PR_EXT:000016008 denotes TACC3
T2670 2880-2889 SO_EXT:biological_sequence denotes sequences
T2671 2893-2908 NCBITaxon:10116 denotes Rattus norvegus
T2672 2910-2923 NCBITaxon:9031 denotes Gallus gallus
T2673 2925-2944 NCBITaxon:8364 denotes Silurana tropicalis
T2674 2946-2957 NCBITaxon:7955 denotes Danio rerio
T2675 2962-2973 NCBITaxon:31033 denotes T. rubripes
T2676 3078-3086 SO_EXT:biological_sequence denotes sequence

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2546 1782-1788 NCBITaxon:9986 denotes rabbit
T2508 64-69 PR:000016008 denotes TACC3
T2509 70-81 SO:0000855 denotes orthologues
T2510 173-177 SO:0000704 denotes gene
T2511 249-253 SO:0000704 denotes gene
T2512 293-303 NCBITaxon:7742 denotes vertebrate
T2513 340-351 NCBITaxon:31033 denotes T. rubripes
T2514 353-360 NCBITaxon:9989 denotes rodents
T2515 365-371 NCBITaxon:9606 denotes humans
T2516 397-407 NCBITaxon:7742 denotes vertebrate
T2517 408-413 PR:000016008 denotes TACC3
T2518 464-471 SO:0001026 denotes genomic
T2519 523-527 SO:0000704 denotes gene
T2520 637-658 NCBITaxon:9986 denotes Oryctolagus cuniculus
T2521 781-786 PR:000016008 denotes TACC3
T2522 836-840 SO:0000704 denotes gene
T2523 866-876 SO:0000673 denotes transcript
T2524 984-989 NCBITaxon:9606 denotes human
T2525 994-999 NCBITaxon:10088 denotes mouse
T2526 1000-1005 PR:000016008 denotes TACC3
T2527 1063-1069 NCBITaxon:9986 denotes rabbit
T2528 1070-1075 PR:000016008 denotes TACC3
T2529 1140-1146 NCBITaxon:9986 denotes rabbit
T2530 1147-1152 PR:000016008 denotes TACC3
T2531 1196-1201 NCBITaxon:9606 denotes human
T2532 1206-1211 NCBITaxon:10088 denotes mouse
T2533 1212-1217 PR:000016008 denotes TACC3
T2534 1294-1299 NCBITaxon:9606 denotes human
T2535 1304-1309 NCBITaxon:10088 denotes mouse
T2536 1310-1315 PR:000016008 denotes TACC3
T2537 1422-1427 SO:0000704 denotes genes
T2538 1443-1452 SO:0000993 denotes consensus
T2539 1469-1475 SO:0000112 denotes primer
T2540 1588-1593 PR:000016008 denotes TACC3
T2541 1605-1613 NCBITaxon:9443 denotes primates
T2542 1618-1625 NCBITaxon:9989 denotes rodents
T2543 1638-1644 SO:0000112 denotes primer
T2544 1690-1696 SO:0000112 denotes primer
T2545 1765-1776 SO:0000006 denotes PCR product
T2547 1789-1794 UBERON:0000955 denotes brain
T2548 1856-1865 SO:0000993 denotes consensus
T2549 1879-1881 SO:0000028 denotes bp
T2550 1907-1917 SO:0000673 denotes transcript
T2551 2074-2092 GO:0000380 denotes alternative splice
T2552 2144-2149 PR:000016008 denotes TACC3
T2553 2150-2154 SO:0000704 denotes gene
T2554 2193-2199 NCBITaxon:9986 denotes rabbit
T2555 2211-2221 SO:0000673 denotes transcript
T2556 2234-2240 NCBITaxon:9986 denotes rabbit
T2557 2264-2284 SO:0002138 denotes predicted transcript
T2558 2297-2302 PR:000016008 denotes TACC3
T2559 2649-2655 NCBITaxon:9986 denotes rabbit
T2560 2672-2678 NCBITaxon:9986 denotes rabbit
T2561 2679-2684 PR:000016008 denotes TACC3
T2562 2795-2800 PR:000016008 denotes TACC3
T2563 2801-2812 SO:0000855 denotes orthologues
T2564 2832-2846 NCBITaxon:8355 denotes Xenopus laevis
T2565 2874-2879 PR:000016008 denotes TACC3
T2566 2893-2908 NCBITaxon:10116 denotes Rattus norvegus
T2567 2910-2923 NCBITaxon:9031 denotes Gallus gallus
T2568 2925-2944 NCBITaxon:8364 denotes Silurana tropicalis
T2569 2946-2957 NCBITaxon:7955 denotes Danio rerio
T2570 2962-2973 NCBITaxon:31033 denotes T. rubripes

2_test

Id Subject Object Predicate Lexical cue
15207008-12015314-9665994 690-691 12015314 denotes 9
15207008-12015314-9665995 878-879 12015314 denotes 9
15207008-10366448-9665996 1348-1349 10366448 denotes 2
15207008-12015314-9665997 1740-1741 12015314 denotes 9
15207008-12015314-9665998 2006-2007 12015314 denotes 9