We detected and characterized 2 novel betacoronaviruses—Bat Rp-coronavirus/Shaanxi2011 in R. pusillus bats and Bat Cp-coronavirus/Yunnan2011 in C. plicata bats—in China. The high similarity shown by phylogenetic analysis confirmed the close genetic relationship among the CoVs (SARS-like CoVs and SARS-CoVs) that we analyzed. In contrast, Bat Rp-coronavirus/Shaanxi2011 and Bat Cp-coronavirus/Yunnan2011 showed little genetic similarity with human betacoronaviruses and HCoV-EMC. Although several CoVs are found in horseshoe bats (Rhinolophus spp.), to our knowledge, the SARS-like CoVs in R. pusillus and C. plicata bats in China have not been identified. The description presented here will further the understanding of CoVs distribution in different bat species found in human habitats and provide clues for rapid response to potential public health threats.