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PMC:3589482 / 560-802 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 57-65 NN denotes promoter
T855 48-56 CD denotes SerpinB2
T854 34-47 JJ denotes LPS-regulated
T853 30-33 DT denotes the
T852 26-29 VB denotes map
T851 23-25 TO denotes To
T850 21-22 . denotes .
T849 10-21 NNS denotes macrophages
T848 3-9 JJ denotes murine
T847 0-2 IN denotes in
T888 234-242 NN denotes addition
T887 231-233 IN denotes In
T886 229-230 . denotes .
T885 218-229 NNS denotes macrophages
T884 211-217 JJ denotes murine
T883 206-210 IN denotes into
T882 198-205 NNS denotes mutants
T881 189-197 NN denotes deletion
T880 181-188 JJ denotes several
T879 177-180 CC denotes and
T878 172-176 NN denotes gene
T877 163-171 NNP denotes SerpinB2
T876 156-162 NN denotes murine
T875 152-155 DT denotes the
T874 149-151 IN denotes of
T873 142-148 NN denotes region
T872 133-141 VBG denotes flanking
T871 132-133 : denotes -
T870 131-132 '' denotes '
T869 130-131 CD denotes 5
T868 127-129 NN denotes kb
T867 125-126 CD denotes 5
T866 124-125 NN denotes ∼
T865 120-123 DT denotes the
T864 117-119 IN denotes by
T863 110-116 VBN denotes driven
T862 99-109 NNS denotes constructs
T861 90-98 NN denotes reporter
T860 78-89 VBD denotes transfected
T859 75-77 PRP denotes we
T858 73-74 , denotes ,
T857 66-73 NNS denotes regions
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected
R448 T861 T862 compound reporter,constructs
R449 T862 T860 dobj constructs,transfected
R450 T863 T862 acl driven,constructs
R451 T864 T863 agent by,driven
R452 T865 T873 det the,region
R453 T866 T868 nmod ∼,kb
R454 T867 T866 nummod 5,∼
R455 T868 T872 meta kb,flanking
R456 T869 T868 nummod 5,kb
R457 T870 T869 punct ',5
R458 T871 T872 punct -,flanking
R459 T872 T873 amod flanking,region
R460 T873 T864 pobj region,by
R461 T874 T873 prep of,region
R462 T875 T878 det the,gene
R463 T876 T878 compound murine,gene
R464 T877 T878 compound SerpinB2,gene
R465 T878 T874 pobj gene,of
R466 T879 T878 cc and,gene
R467 T880 T882 amod several,mutants
R468 T881 T882 compound deletion,mutants
R469 T882 T878 conj mutants,gene
R470 T883 T863 prep into,driven
R471 T884 T885 amod murine,macrophages
R472 T885 T883 pobj macrophages,into
R473 T886 T860 punct .,transfected
R475 T888 T887 pobj addition,In

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T344 234-242 NN denotes addition
T343 231-233 IN denotes In
T342 218-229 NN denotes macrophages
T341 211-217 JJ denotes murine
T340 206-210 IN denotes into
T339 198-205 NN denotes mutants
T338 189-197 NN denotes deletion
T337 181-188 JJ denotes several
T336 177-180 CC denotes and
T335 172-176 NN denotes gene
T334 163-171 NN denotes SerpinB2
T333 156-162 JJ denotes murine
T332 152-155 DT denotes the
T331 149-151 IN denotes of
T330 142-148 NN denotes region
T329 130-141 JJ denotes 5'-flanking
T328 127-129 NN denotes kb
T327 124-126 CD denotes ∼5
T326 120-123 DT denotes the
T325 117-119 IN denotes by
T324 110-116 VB denotes driven
T323 99-109 NN denotes constructs
T322 90-98 NN denotes reporter
T321 78-89 VB denotes transfected
T320 75-77 PRP denotes we
T319 73-74 -COMMA- denotes ,
T318 66-73 NN denotes regions
T317 57-65 NN denotes promoter
T316 48-56 NN denotes SerpinB2
T315 34-47 JJ denotes LPS-regulated
T314 30-33 DT denotes the
T313 26-29 VB denotes map
T312 23-25 TO denotes To
T311 10-21 NN denotes macrophages
T310 3-9 JJ denotes murine
T309 0-2 IN denotes in
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","
R133 T323 T321 arg2Of constructs,transfected
R134 T323 T322 arg1Of constructs,reporter
R135 T323 T324 arg2Of constructs,driven
R136 T330 T324 arg1Of region,driven
R137 T330 T325 arg2Of region,by
R138 T330 T326 arg1Of region,the
R139 T330 T327 arg1Of region,∼5
R140 T330 T328 arg1Of region,kb
R141 T330 T329 arg1Of region,5'-flanking
R142 T330 T331 arg1Of region,of
R143 T330 T340 arg1Of region,into
R144 T335 T332 arg1Of gene,the
R145 T335 T333 arg1Of gene,murine
R146 T335 T334 arg1Of gene,SerpinB2
R147 T335 T336 arg1Of gene,and
R148 T336 T331 arg2Of and,of
R149 T339 T336 arg2Of mutants,and
R150 T339 T337 arg1Of mutants,several
R151 T339 T338 arg1Of mutants,deletion
R152 T342 T340 arg2Of macrophages,into
R153 T342 T341 arg1Of macrophages,murine
R154 T344 T343 arg2Of addition,In

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T165 48-56 Protein denotes SerpinB2
T166 163-171 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T532 48-56 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T533 163-171 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T102 23-230 Sentence denotes To map the LPS-regulated SerpinB2 promoter regions, we transfected reporter constructs driven by the ∼5 kb 5'-flanking region of the murine SerpinB2 gene and several deletion mutants into murine macrophages.
T6 23-230 Sentence denotes To map the LPS-regulated SerpinB2 promoter regions, we transfected reporter constructs driven by the ∼5 kb 5'-flanking region of the murine SerpinB2 gene and several deletion mutants into murine macrophages.

simple1

Id Subject Object Predicate Lexical cue
T218 48-56 Protein denotes SerpinB2
T219 163-171 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T500 48-56 Protein denotes SerpinB2
T499 163-171 Protein denotes SerpinB2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T609 163-171 Protein denotes SerpinB2
T610 48-56 Protein denotes SerpinB2

DLUT931

Id Subject Object Predicate Lexical cue
T575 163-171 Protein denotes SerpinB2
T576 48-56 Protein denotes SerpinB2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T753 163-171 Protein denotes SerpinB2
T720 48-56 Protein denotes SerpinB2
T724 3-21 Entity denotes murine macrophages
T726 211-229 Entity denotes murine macrophages
T729 30-74 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T741 34-47 Entity denotes LPS-regulated
T743 149-176 Protein denotes of the murine SerpinB2 gene

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T649 156-176 Protein denotes murine SerpinB2 gene
T648 48-65 Protein denotes SerpinB2 promoter

testone

Id Subject Object Predicate Lexical cue
T29 163-171 Protein denotes SerpinB2
T28 48-56 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T80 163-171 Protein denotes SerpinB2
T79 48-56 Protein denotes SerpinB2
T58 163-171 Protein denotes SerpinB2
T57 48-56 Protein denotes SerpinB2