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PMC:3589482 / 46550-46815 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T22225 264-265 . denotes .
T22224 248-264 NN denotes microenvironment
T22223 242-247 NN denotes tumor
T22222 238-241 DT denotes the
T22221 235-237 IN denotes in
T22220 229-234 NNS denotes cells
T22219 222-228 JJ denotes immune
T22218 209-221 VBG denotes infiltrating
T22217 206-208 IN denotes of
T22216 196-205 NN denotes phenotype
T22215 183-195 JJ denotes inflammatory
T22214 179-182 DT denotes the
T22213 175-178 IN denotes for
T22212 162-174 NNS denotes implications
T22211 157-161 VB denotes have
T22210 153-156 MD denotes may
T22209 147-152 WDT denotes which
T22208 145-146 , denotes ,
T22207 141-145 NN denotes gene
T22206 132-140 NNP denotes SerpinB2
T22205 128-131 DT denotes the
T22204 125-127 IN denotes of
T22203 111-124 NN denotes transcription
T22202 99-110 JJ denotes LPS-induced
T22201 95-98 CC denotes and
T22200 82-94 JJ denotes constitutive
T22199 77-81 DT denotes both
T22198 67-76 VBG denotes mediating
T22197 64-66 IN denotes in
T22196 59-63 NN denotes role
T22195 49-58 JJ denotes important
T22194 46-48 DT denotes an
T22193 40-45 VBZ denotes plays
T22192 38-39 NN denotes β
T22191 37-38 : denotes -
T22190 32-37 NNP denotes C/EBP
T22189 27-31 IN denotes that
T22188 14-26 VBN denotes demonstrated
T22187 10-13 VBZ denotes has
T22186 4-9 NN denotes study
T22185 0-3 PRP$ denotes Our
R16019 T22185 T22186 poss Our,study
R16021 T22186 T22188 nsubj study,demonstrated
R16022 T22187 T22188 aux has,demonstrated
R16023 T22188 T22188 ROOT demonstrated,demonstrated
R16025 T22189 T22193 mark that,plays
R16026 T22190 T22192 compound C/EBP,β
R16028 T22191 T22192 punct -,β
R16029 T22192 T22193 nsubj β,plays
R16030 T22193 T22188 ccomp plays,demonstrated
R16032 T22194 T22196 det an,role
R16033 T22195 T22196 amod important,role
R16034 T22196 T22193 dobj role,plays
R16036 T22197 T22196 prep in,role
R16037 T22198 T22197 pcomp mediating,in
R16039 T22199 T22200 preconj both,constitutive
R16040 T22200 T22203 nmod constitutive,transcription
R16041 T22201 T22200 cc and,constitutive
R16043 T22202 T22200 conj LPS-induced,constitutive
R16044 T22203 T22198 dobj transcription,mediating
R16045 T22204 T22203 prep of,transcription
R16046 T22205 T22207 det the,gene
R16047 T22206 T22207 compound SerpinB2,gene
R16049 T22207 T22204 pobj gene,of
R16050 T22208 T22207 punct ",",gene
R16051 T22209 T22211 nsubj which,have
R16052 T22210 T22211 aux may,have
R16054 T22211 T22207 relcl have,gene
R16055 T22212 T22211 dobj implications,have
R16057 T22213 T22212 prep for,implications
R16058 T22214 T22216 det the,phenotype
R16059 T22215 T22216 amod inflammatory,phenotype
R16061 T22216 T22213 pobj phenotype,for
R16062 T22217 T22216 prep of,phenotype
R16063 T22218 T22217 pcomp infiltrating,of
R16065 T22219 T22220 amod immune,cells
R16067 T22220 T22218 dobj cells,infiltrating
R16069 T22221 T22218 prep in,infiltrating
R16071 T22222 T22224 det the,microenvironment
R16072 T22223 T22224 compound tumor,microenvironment
R16074 T22224 T22221 pobj microenvironment,in
R16075 T22225 T22188 punct .,demonstrated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19926 248-264 NN denotes microenvironment
T19925 242-247 NN denotes tumor
T19924 238-241 DT denotes the
T19923 235-237 IN denotes in
T19922 229-234 NN denotes cells
T19921 222-228 JJ denotes immune
T19920 209-221 VB denotes infiltrating
T19919 206-208 IN denotes of
T19918 196-205 NN denotes phenotype
T19917 183-195 JJ denotes inflammatory
T19916 179-182 DT denotes the
T19915 175-178 IN denotes for
T19914 162-174 NN denotes implications
T19913 157-161 VB denotes have
T19912 153-156 MD denotes may
T19911 147-152 WDT denotes which
T19910 145-146 -COMMA- denotes ,
T19909 141-145 NN denotes gene
T19908 132-140 NN denotes SerpinB2
T19907 128-131 DT denotes the
T19906 125-127 IN denotes of
T19905 111-124 NN denotes transcription
T19904 99-110 JJ denotes LPS-induced
T19903 95-98 CC denotes and
T19902 82-94 JJ denotes constitutive
T19901 77-81 CC denotes both
T19900 67-76 VB denotes mediating
T19899 64-66 IN denotes in
T19898 59-63 NN denotes role
T19897 49-58 JJ denotes important
T19896 46-48 DT denotes an
T19895 40-45 VB denotes plays
T19894 32-39 NN denotes C/EBP-β
T19893 27-31 IN denotes that
T19892 14-26 VB denotes demonstrated
T19891 10-13 VB denotes has
T19890 4-9 NN denotes study
T19889 0-3 PRP-DOLLAR- denotes Our
R14397 T19890 T19889 arg1Of study,Our
R14398 T19890 T19891 arg1Of study,has
R14399 T19890 T19892 arg1Of study,demonstrated
R14400 T19892 T19891 arg2Of demonstrated,has
R14401 T19894 T19895 arg1Of C/EBP-β,plays
R14402 T19895 T19892 arg2Of plays,demonstrated
R14403 T19895 T19893 arg1Of plays,that
R14404 T19898 T19895 arg2Of role,plays
R14405 T19898 T19896 arg1Of role,an
R14406 T19898 T19897 arg1Of role,important
R14407 T19898 T19899 arg1Of role,in
R14408 T19898 T19910 arg1Of role,","
R14409 T19898 T19911 arg1Of role,which
R14410 T19898 T19912 arg1Of role,may
R14411 T19898 T19913 arg1Of role,have
R14412 T19900 T19899 arg2Of mediating,in
R14413 T19902 T19903 arg1Of constitutive,and
R14414 T19903 T19901 arg1Of and,both
R14415 T19904 T19903 arg2Of LPS-induced,and
R14416 T19905 T19900 arg2Of transcription,mediating
R14417 T19905 T19902 arg1Of transcription,constitutive
R14418 T19905 T19904 arg1Of transcription,LPS-induced
R14419 T19905 T19906 arg1Of transcription,of
R14420 T19909 T19906 arg2Of gene,of
R14421 T19909 T19907 arg1Of gene,the
R14422 T19909 T19908 arg1Of gene,SerpinB2
R14423 T19913 T19912 arg2Of have,may
R14424 T19914 T19913 arg2Of implications,have
R14425 T19914 T19915 arg1Of implications,for
R14426 T19918 T19915 arg2Of phenotype,for
R14427 T19918 T19916 arg1Of phenotype,the
R14428 T19918 T19917 arg1Of phenotype,inflammatory
R14429 T19918 T19919 arg1Of phenotype,of
R14430 T19920 T19919 arg2Of infiltrating,of
R14431 T19920 T19923 arg1Of infiltrating,in
R14432 T19922 T19920 arg2Of cells,infiltrating
R14433 T19922 T19921 arg1Of cells,immune
R14434 T19926 T19923 arg2Of microenvironment,in
R14435 T19926 T19924 arg1Of microenvironment,the
R14436 T19926 T19925 arg1Of microenvironment,tumor

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18783 132-140 Protein denotes SerpinB2
T18782 32-39 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20238 132-140 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T18843 222-247 http://purl.obolibrary.org/obo/GO_0002418 denotes immune cells in the tumor
T18806 111-124 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T18853 229-234 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T18512 0-265 Sentence denotes Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment.
T277 0-265 Sentence denotes Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment.

simple1

Id Subject Object Predicate Lexical cue
T18920 132-140 Protein denotes SerpinB2
T18919 32-39 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20199 99-110 Positive_regulation denotes LPS-induced
T20198 111-124 Transcription denotes transcription
T20128 132-140 Protein denotes SerpinB2
T20127 32-39 Protein denotes C/EBP-β
R14568 T20128 T20198 themeOf SerpinB2,transcription
R14610 T20198 T20199 themeOf transcription,LPS-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20638 111-124 Transcription denotes transcription
T20637 99-110 Positive_regulation denotes LPS-induced
T20578 132-140 Protein denotes SerpinB2
T20577 32-39 Protein denotes C/EBP-β
R14777 T20578 T20638 themeOf SerpinB2,transcription
R14800 T20638 T20637 themeOf transcription,LPS-induced

DLUT931

Id Subject Object Predicate Lexical cue
T20418 99-110 Positive_regulation denotes LPS-induced
T20417 111-124 Transcription denotes transcription
T20352 132-140 Protein denotes SerpinB2
T20351 32-39 Protein denotes C/EBP-β
R14663 T20352 T20417 themeOf SerpinB2,transcription
R14698 T20417 T20418 themeOf transcription,LPS-induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21111 82-145 Transcription denotes constitutive and LPS-induced transcription of the SerpinB2 gene
T21087 67-145 Regulation denotes mediating both constitutive and LPS-induced transcription of the SerpinB2 gene
T21018 132-140 Protein denotes SerpinB2
T20929 32-39 Protein denotes C/EBP-β
T20916 99-110 Entity denotes LPS-induced
T20954 125-145 Protein denotes of the SerpinB2 gene
R14945 T20954 T21111 themeOf of the SerpinB2 gene,constitutive and LPS-induced transcription of the SerpinB2 gene
R14979 T21111 T21087 themeOf constitutive and LPS-induced transcription of the SerpinB2 gene,mediating both constitutive and LPS-induced transcription of the SerpinB2 gene

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20765 67-76 Positive_regulation denotes mediating
T20764 111-124 Transcription denotes transcription
T20763 132-145 Protein denotes SerpinB2 gene
T20762 32-39 Protein denotes C/EBP-β
R14863 T20762 T20765 causeOf C/EBP-β,mediating
R14864 T20763 T20764 themeOf SerpinB2 gene,transcription
R14865 T20764 T20765 themeOf transcription,mediating

testone

Id Subject Object Predicate Lexical cue
T18278 111-124 Transcription denotes transcription
T18277 103-110 Positive_regulation denotes induced
T18231 132-140 Protein denotes SerpinB2
T18230 32-39 Protein denotes C/EBP-β
R13142 T18231 T18278 themeOf SerpinB2,transcription
R13156 T18278 T18277 themeOf transcription,induced

test3

Id Subject Object Predicate Lexical cue
T18472 132-140 Protein denotes SerpinB2
T18471 111-124 Transcription denotes transcription
T18470 103-110 Positive_regulation denotes induced
T18469 32-39 Protein denotes C/EBP-β
T18348 132-140 Protein denotes SerpinB2
T18347 32-39 Protein denotes C/EBP-β
R13219 T18471 T18470 themeOf transcription,induced
R13220 T18472 T18471 themeOf SerpinB2,transcription