PMC:3589482 / 46110-46270 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T22120","span":{"begin":159,"end":160},"obj":"."},{"id":"T22119","span":{"begin":158,"end":159},"obj":"NNP"},{"id":"T22118","span":{"begin":156,"end":158},"obj":"CD"},{"id":"T22117","span":{"begin":155,"end":156},"obj":"NNP"},{"id":"T22116","span":{"begin":150,"end":154},"obj":"NN"},{"id":"T22115","span":{"begin":143,"end":149},"obj":"NN"},{"id":"T22114","span":{"begin":140,"end":142},"obj":"IN"},{"id":"T22113","span":{"begin":130,"end":139},"obj":"VBG"},{"id":"T22112","span":{"begin":120,"end":129},"obj":"NN"},{"id":"T22111","span":{"begin":109,"end":119},"obj":"JJ"},{"id":"T22110","span":{"begin":97,"end":108},"obj":"JJ"},{"id":"T22109","span":{"begin":94,"end":96},"obj":"CC"},{"id":"T22108","span":{"begin":84,"end":93},"obj":"JJ"},{"id":"T22107","span":{"begin":82,"end":83},"obj":"DT"},{"id":"T22106","span":{"begin":79,"end":81},"obj":"VBZ"},{"id":"T22105","span":{"begin":75,"end":78},"obj":"CC"},{"id":"T22104","span":{"begin":73,"end":74},"obj":","},{"id":"T22103","span":{"begin":67,"end":73},"obj":"NN"},{"id":"T22102","span":{"begin":63,"end":66},"obj":"CC"},{"id":"T22101","span":{"begin":50,"end":62},"obj":"NN"},{"id":"T22100","span":{"begin":45,"end":49},"obj":"DT"},{"id":"T22099","span":{"begin":40,"end":44},"obj":"IN"},{"id":"T22098","span":{"begin":29,"end":39},"obj":"VBN"},{"id":"T22097","span":{"begin":24,"end":28},"obj":"VBN"},{"id":"T22096","span":{"begin":20,"end":23},"obj":"VBZ"},{"id":"T22095","span":{"begin":9,"end":19},"obj":"NN"},{"id":"T22094","span":{"begin":0,"end":8},"obj":"CD"}],"relations":[{"id":"R15888","pred":"nummod","subj":"T22094","obj":"T22095"},{"id":"R15890","pred":"nsubjpass","subj":"T22095","obj":"T22098"},{"id":"R15891","pred":"aux","subj":"T22096","obj":"T22098"},{"id":"R15892","pred":"auxpass","subj":"T22097","obj":"T22098"},{"id":"R15894","pred":"ROOT","subj":"T22098","obj":"T22098"},{"id":"R15895","pred":"prep","subj":"T22099","obj":"T22098"},{"id":"R15896","pred":"preconj","subj":"T22100","obj":"T22101"},{"id":"R15897","pred":"pobj","subj":"T22101","obj":"T22099"},{"id":"R15900","pred":"cc","subj":"T22102","obj":"T22101"},{"id":"R15902","pred":"conj","subj":"T22103","obj":"T22101"},{"id":"R15903","pred":"punct","subj":"T22104","obj":"T22098"},{"id":"R15905","pred":"cc","subj":"T22105","obj":"T22098"},{"id":"R15906","pred":"conj","subj":"T22106","obj":"T22098"},{"id":"R15907","pred":"det","subj":"T22107","obj":"T22112"},{"id":"R15909","pred":"amod","subj":"T22108","obj":"T22112"},{"id":"R15910","pred":"cc","subj":"T22109","obj":"T22108"},{"id":"R15912","pred":"conj","subj":"T22110","obj":"T22108"},{"id":"R15913","pred":"amod","subj":"T22111","obj":"T22112"},{"id":"R15914","pred":"attr","subj":"T22112","obj":"T22106"},{"id":"R15917","pred":"acl","subj":"T22113","obj":"T22112"},{"id":"R15918","pred":"prep","subj":"T22114","obj":"T22113"},{"id":"R15920","pred":"compound","subj":"T22115","obj":"T22116"},{"id":"R15921","pred":"pobj","subj":"T22116","obj":"T22114"},{"id":"R15922","pred":"nmod","subj":"T22117","obj":"T22119"},{"id":"R15924","pred":"nummod","subj":"T22118","obj":"T22119"},{"id":"R15925","pred":"appos","subj":"T22119","obj":"T22112"},{"id":"R15927","pred":"punct","subj":"T22120","obj":"T22106"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    2_test

    {"project":"2_test","denotations":[{"id":"23472114-18548086-87899196","span":{"begin":156,"end":158},"obj":"18548086"},{"id":"T55278","span":{"begin":156,"end":158},"obj":"18548086"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T19827","span":{"begin":158,"end":159},"obj":"-RRB-"},{"id":"T19826","span":{"begin":156,"end":158},"obj":"CD"},{"id":"T19825","span":{"begin":155,"end":156},"obj":"-LRB-"},{"id":"T19824","span":{"begin":150,"end":154},"obj":"NN"},{"id":"T19823","span":{"begin":143,"end":149},"obj":"NN"},{"id":"T19822","span":{"begin":140,"end":142},"obj":"IN"},{"id":"T19821","span":{"begin":130,"end":139},"obj":"VB"},{"id":"T19820","span":{"begin":120,"end":129},"obj":"NN"},{"id":"T19819","span":{"begin":109,"end":119},"obj":"JJ"},{"id":"T19818","span":{"begin":97,"end":108},"obj":"JJ"},{"id":"T19817","span":{"begin":94,"end":96},"obj":"CC"},{"id":"T19816","span":{"begin":84,"end":93},"obj":"JJ"},{"id":"T19815","span":{"begin":82,"end":83},"obj":"DT"},{"id":"T19814","span":{"begin":79,"end":81},"obj":"VB"},{"id":"T19813","span":{"begin":75,"end":78},"obj":"CC"},{"id":"T19812","span":{"begin":73,"end":74},"obj":"-COMMA-"},{"id":"T19811","span":{"begin":67,"end":73},"obj":"NN"},{"id":"T19810","span":{"begin":63,"end":66},"obj":"CC"},{"id":"T19809","span":{"begin":50,"end":62},"obj":"NN"},{"id":"T19808","span":{"begin":45,"end":49},"obj":"CC"},{"id":"T19807","span":{"begin":40,"end":44},"obj":"IN"},{"id":"T19806","span":{"begin":29,"end":39},"obj":"VB"},{"id":"T19805","span":{"begin":24,"end":28},"obj":"VB"},{"id":"T19804","span":{"begin":20,"end":23},"obj":"VB"},{"id":"T19803","span":{"begin":9,"end":19},"obj":"NN"},{"id":"T19802","span":{"begin":0,"end":8},"obj":"NN"}],"relations":[{"id":"R14301","pred":"arg1Of","subj":"T19803","obj":"T19802"},{"id":"R14302","pred":"arg1Of","subj":"T19803","obj":"T19804"},{"id":"R14303","pred":"arg1Of","subj":"T19803","obj":"T19805"},{"id":"R14304","pred":"arg2Of","subj":"T19803","obj":"T19806"},{"id":"R14305","pred":"arg1Of","subj":"T19803","obj":"T19814"},{"id":"R14306","pred":"arg2Of","subj":"T19806","obj":"T19804"},{"id":"R14307","pred":"arg2Of","subj":"T19806","obj":"T19805"},{"id":"R14308","pred":"arg1Of","subj":"T19806","obj":"T19807"},{"id":"R14309","pred":"arg1Of","subj":"T19806","obj":"T19813"},{"id":"R14310","pred":"arg1Of","subj":"T19809","obj":"T19810"},{"id":"R14311","pred":"arg2Of","subj":"T19810","obj":"T19807"},{"id":"R14312","pred":"arg1Of","subj":"T19810","obj":"T19808"},{"id":"R14313","pred":"arg2Of","subj":"T19811","obj":"T19810"},{"id":"R14314","pred":"arg1Of","subj":"T19813","obj":"T19812"},{"id":"R14315","pred":"arg1Of","subj":"T19813","obj":"T19825"},{"id":"R14316","pred":"arg2Of","subj":"T19814","obj":"T19813"},{"id":"R14317","pred":"arg1Of","subj":"T19814","obj":"T19821"},{"id":"R14318","pred":"arg1Of","subj":"T19816","obj":"T19817"},{"id":"R14319","pred":"arg2Of","subj":"T19818","obj":"T19817"},{"id":"R14320","pred":"arg2Of","subj":"T19820","obj":"T19814"},{"id":"R14321","pred":"arg1Of","subj":"T19820","obj":"T19815"},{"id":"R14322","pred":"arg1Of","subj":"T19820","obj":"T19816"},{"id":"R14323","pred":"arg1Of","subj":"T19820","obj":"T19818"},{"id":"R14324","pred":"arg1Of","subj":"T19820","obj":"T19819"},{"id":"R14325","pred":"arg2Of","subj":"T19822","obj":"T19821"},{"id":"R14326","pred":"arg2Of","subj":"T19824","obj":"T19822"},{"id":"R14327","pred":"arg1Of","subj":"T19824","obj":"T19823"},{"id":"R14328","pred":"arg2Of","subj":"T19826","obj":"T19825"},{"id":"R14329","pred":"arg3Of","subj":"T19827","obj":"T19825"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T18779","span":{"begin":0,"end":8},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T20236","span":{"begin":0,"end":8},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T18823","span":{"begin":50,"end":62},"obj":"http://purl.obolibrary.org/obo/GO_0006954"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    sentences

    {"project":"sentences","denotations":[{"id":"T18509","span":{"begin":0,"end":160},"obj":"Sentence"},{"id":"T274","span":{"begin":0,"end":160},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    simple1

    {"project":"simple1","denotations":[{"id":"T18916","span":{"begin":0,"end":8},"obj":"Protein"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T20197","span":{"begin":9,"end":19},"obj":"Gene_expression"},{"id":"T20124","span":{"begin":0,"end":8},"obj":"Protein"}],"relations":[{"id":"R14567","pred":"themeOf","subj":"T20124","obj":"T20197"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T20636","span":{"begin":9,"end":19},"obj":"Gene_expression"},{"id":"T20574","span":{"begin":0,"end":8},"obj":"Protein"}],"relations":[{"id":"R14776","pred":"themeOf","subj":"T20574","obj":"T20636"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T20416","span":{"begin":29,"end":39},"obj":"Binding"},{"id":"T20415","span":{"begin":9,"end":19},"obj":"Gene_expression"},{"id":"T20348","span":{"begin":0,"end":8},"obj":"Protein"}],"relations":[{"id":"R14661","pred":"themeOf","subj":"T20348","obj":"T20415"},{"id":"R14662","pred":"themeOf","subj":"T20348","obj":"T20416"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T20913","span":{"begin":0,"end":8},"obj":"Protein"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T20759","span":{"begin":9,"end":19},"obj":"Gene_expression"},{"id":"T20758","span":{"begin":0,"end":8},"obj":"Protein"}],"relations":[{"id":"R14862","pred":"themeOf","subj":"T20758","obj":"T20759"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    testone

    {"project":"testone","denotations":[{"id":"T18227","span":{"begin":0,"end":8},"obj":"Protein"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}

    test3

    {"project":"test3","denotations":[{"id":"T18466","span":{"begin":9,"end":19},"obj":"Gene_expression"},{"id":"T18465","span":{"begin":0,"end":8},"obj":"Protein"},{"id":"T18344","span":{"begin":0,"end":8},"obj":"Protein"}],"relations":[{"id":"R13218","pred":"themeOf","subj":"T18465","obj":"T18466"}],"text":"SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77]."}