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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T22225 930-931 . denotes .
T22224 914-930 NN denotes microenvironment
T22223 908-913 NN denotes tumor
T22222 904-907 DT denotes the
T22221 901-903 IN denotes in
T22220 895-900 NNS denotes cells
T22219 888-894 JJ denotes immune
T22218 875-887 VBG denotes infiltrating
T22217 872-874 IN denotes of
T22216 862-871 NN denotes phenotype
T22215 849-861 JJ denotes inflammatory
T22214 845-848 DT denotes the
T22213 841-844 IN denotes for
T22212 828-840 NNS denotes implications
T22211 823-827 VB denotes have
T22210 819-822 MD denotes may
T22209 813-818 WDT denotes which
T22208 811-812 , denotes ,
T22207 807-811 NN denotes gene
T22206 798-806 NNP denotes SerpinB2
T22205 794-797 DT denotes the
T22204 791-793 IN denotes of
T22203 777-790 NN denotes transcription
T22202 765-776 JJ denotes LPS-induced
T22201 761-764 CC denotes and
T22200 748-760 JJ denotes constitutive
T22199 743-747 DT denotes both
T22198 733-742 VBG denotes mediating
T22197 730-732 IN denotes in
T22196 725-729 NN denotes role
T22195 715-724 JJ denotes important
T22194 712-714 DT denotes an
T22193 706-711 VBZ denotes plays
T22192 704-705 NN denotes β
T22191 703-704 : denotes -
T22190 698-703 NNP denotes C/EBP
T22189 693-697 IN denotes that
T22188 680-692 VBN denotes demonstrated
T22187 676-679 VBZ denotes has
T22186 670-675 NN denotes study
T22185 666-669 PRP$ denotes Our
T22184 664-665 . denotes .
T22183 663-664 NNP denotes ]
T22182 661-663 CD denotes 81
T22181 660-661 NNP denotes [
T22180 658-659 NNP denotes ]
T22179 656-658 CD denotes 79
T22178 655-656 NNP denotes [
T22177 653-654 : denotes ;
T22176 652-653 NNP denotes ]
T22175 650-652 CD denotes 27
T22174 649-650 NNP denotes [
T22173 639-648 NN denotes phenotype
T22172 633-638 PRP$ denotes their
T22171 623-632 VBG denotes modifying
T22170 615-622 RB denotes thereby
T22169 613-614 , denotes ,
T22168 608-613 NNS denotes cells
T22167 601-607 JJ denotes immune
T22166 596-600 IN denotes from
T22165 586-595 NN denotes secretion
T22164 577-585 JJ denotes cytokine
T22163 568-576 VB denotes modulate
T22162 565-567 TO denotes to
T22161 559-564 VBN denotes shown
T22160 554-558 VBN denotes been
T22159 549-553 RB denotes also
T22158 545-548 VBZ denotes has
T22157 543-544 NN denotes β
T22156 542-543 : denotes -
T22155 537-542 SYM denotes C/EBP
T22154 523-536 RB denotes Interestingly
T22153 521-522 . denotes .
T22152 520-521 NNP denotes ]
T22151 518-520 CD denotes 78
T22150 517-518 NNP denotes [
T22149 515-516 : denotes ;
T22148 514-515 NNP denotes ]
T22147 512-514 CD denotes 77
T22146 511-512 NNP denotes [
T22145 509-510 : denotes ;
T22143 506-508 CD denotes 28
T22142 505-506 NNP denotes [
T22141 503-504 : denotes ;
T22140 502-503 NNP denotes ]
T22139 500-502 CD denotes 27
T22138 499-500 NNP denotes [
T22137 486-498 NN denotes polarization
T22136 481-485 NN denotes cell
T22135 474-480 JJ denotes immune
T22134 467-473 VB denotes affect
T22133 463-466 MD denotes can
T22132 457-462 WDT denotes which
T22131 448-456 NNS denotes profiles
T22130 439-447 JJ denotes cytokine
T22129 430-438 VB denotes modulate
T22128 427-429 TO denotes to
T22127 421-426 VBN denotes shown
T22126 416-420 VBN denotes been
T22125 412-415 VBZ denotes has
T22124 403-411 NNP denotes SerpinB2
T22123 400-402 IN denotes of
T22122 391-399 NN denotes presence
T22121 387-390 DT denotes The
T22120 385-386 . denotes .
T22119 384-385 NNP denotes ]
T22118 382-384 CD denotes 77
T22117 381-382 NNP denotes [
T22116 376-380 NN denotes type
T22115 369-375 NN denotes cancer
T22114 366-368 IN denotes on
T22113 356-365 VBG denotes depending
T22112 346-355 NN denotes indicator
T22111 335-345 JJ denotes prognostic
T22110 323-334 JJ denotes unfavorable
T22109 320-322 CC denotes or
T22108 310-319 JJ denotes favorable
T22107 308-309 DT denotes a
T22106 305-307 VBZ denotes is
T22105 301-304 CC denotes and
T22104 299-300 , denotes ,
T22103 293-299 NN denotes cancer
T22102 289-292 CC denotes and
T22101 276-288 NN denotes inflammation
T22100 271-275 DT denotes both
T22099 266-270 IN denotes with
T22098 255-265 VBN denotes associated
T22097 250-254 VBN denotes been
T22096 246-249 VBZ denotes has
T22095 235-245 NN denotes expression
T22094 226-234 CD denotes SerpinB2
T22093 224-225 . denotes .
T22092 223-224 NNP denotes ]
T22091 221-223 CD denotes 76
T22090 220-221 NNP denotes [
T22089 218-219 NNP denotes ]
T22088 216-218 CD denotes 74
T22087 215-216 NNP denotes [
T22086 213-214 : denotes ;
T22085 212-213 NNP denotes ]
T22084 211-212 CD denotes 2
T22083 210-211 NNP denotes [
T22082 198-209 NN denotes progression
T22081 191-197 NN denotes cancer
T22080 181-190 VB denotes attenuate
T22079 178-180 CC denotes or
T22078 170-177 VB denotes promote
T22077 163-169 RB denotes either
T22076 159-162 MD denotes can
T22075 147-158 NNS denotes macrophages
T22074 144-146 IN denotes as
T22073 139-143 JJ denotes such
T22072 133-138 NNS denotes cells
T22071 126-132 JJ denotes immune
T22070 122-125 CC denotes and
T22069 120-121 , denotes ,
T22068 114-120 NN denotes cancer
T22067 110-113 CC denotes and
T22066 97-109 NN denotes inflammation
T22065 89-96 JJ denotes chronic
T22064 86-88 TO denotes to
T22063 79-85 VBN denotes linked
T22062 68-78 RB denotes integrally
T22061 65-67 VBZ denotes is
T22060 55-64 NN denotes infection
T22059 44-54 JJ denotes persistent
T22058 39-43 IN denotes that
T22057 30-38 JJ denotes apparent
T22056 23-29 VBN denotes become
T22055 19-22 VBZ denotes has
T22054 16-18 PRP denotes it
T22053 10-15 NNS denotes years
T22052 3-9 JJ denotes recent
T22051 0-2 IN denotes In
T22144 508-509 NNP denotes ]
R15824 T22051 T22056 prep In,become
R15826 T22052 T22053 amod recent,years
R15827 T22053 T22051 pobj years,In
R15828 T22054 T22056 nsubj it,become
R15830 T22055 T22056 aux has,become
R15831 T22056 T22056 ROOT become,become
R15833 T22057 T22056 acomp apparent,become
R15834 T22058 T22063 mark that,linked
R15835 T22059 T22060 amod persistent,infection
R15837 T22060 T22063 nsubjpass infection,linked
R15838 T22061 T22063 auxpass is,linked
R15840 T22062 T22063 advmod integrally,linked
R15842 T22063 T22056 ccomp linked,become
R15843 T22064 T22063 prep to,linked
R15844 T22065 T22066 amod chronic,inflammation
R15846 T22066 T22064 pobj inflammation,to
R15847 T22067 T22066 cc and,inflammation
R15848 T22068 T22066 conj cancer,inflammation
R15850 T22069 T22068 punct ",",cancer
R15851 T22070 T22068 cc and,cancer
R15852 T22071 T22072 amod immune,cells
R15854 T22072 T22068 conj cells,cancer
R15855 T22073 T22074 amod such,as
R15857 T22074 T22072 prep as,cells
R15858 T22075 T22074 pobj macrophages,as
R15860 T22076 T22078 aux can,promote
R15861 T22077 T22078 preconj either,promote
R15865 T22078 T22056 conj promote,become
R15867 T22079 T22078 cc or,promote
R15868 T22080 T22078 conj attenuate,promote
R15870 T22081 T22082 compound cancer,progression
R15871 T22082 T22080 dobj progression,attenuate
R15872 T22083 T22085 nmod [,]
R15874 T22084 T22085 nummod 2,]
R15875 T22085 T22080 conj ],attenuate
R15877 T22086 T22085 punct ;,]
R15878 T22087 T22085 conj [,]
R15879 T22088 T22089 nummod 74,]
R15881 T22089 T22085 conj ],]
R15882 T22090 T22085 appos [,]
R15884 T22091 T22092 nummod 76,]
R15885 T22092 T22085 conj ],]
R15887 T22093 T22056 punct .,become
R15888 T22094 T22095 nummod SerpinB2,expression
R15890 T22095 T22098 nsubjpass expression,associated
R15891 T22096 T22098 aux has,associated
R15892 T22097 T22098 auxpass been,associated
R15894 T22098 T22098 ROOT associated,associated
R15895 T22099 T22098 prep with,associated
R15896 T22100 T22101 preconj both,inflammation
R15897 T22101 T22099 pobj inflammation,with
R15900 T22102 T22101 cc and,inflammation
R15902 T22103 T22101 conj cancer,inflammation
R15903 T22104 T22098 punct ",",associated
R15905 T22105 T22098 cc and,associated
R15906 T22106 T22098 conj is,associated
R15907 T22107 T22112 det a,indicator
R15909 T22108 T22112 amod favorable,indicator
R15910 T22109 T22108 cc or,favorable
R15912 T22110 T22108 conj unfavorable,favorable
R15913 T22111 T22112 amod prognostic,indicator
R15914 T22112 T22106 attr indicator,is
R15917 T22113 T22112 acl depending,indicator
R15918 T22114 T22113 prep on,depending
R15920 T22115 T22116 compound cancer,type
R15921 T22116 T22114 pobj type,on
R15922 T22117 T22119 nmod [,]
R15924 T22118 T22119 nummod 77,]
R15925 T22119 T22112 appos ],indicator
R15927 T22120 T22106 punct .,is
R15928 T22121 T22122 det The,presence
R15929 T22122 T22127 nsubjpass presence,shown
R15931 T22123 T22122 prep of,presence
R15932 T22124 T22123 pobj SerpinB2,of
R15933 T22125 T22127 aux has,shown
R15935 T22126 T22127 auxpass been,shown
R15936 T22127 T22127 ROOT shown,shown
R15937 T22128 T22129 aux to,modulate
R15939 T22129 T22127 xcomp modulate,shown
R15940 T22130 T22131 amod cytokine,profiles
R15942 T22131 T22129 dobj profiles,modulate
R15943 T22132 T22134 nsubj which,affect
R15944 T22133 T22134 aux can,affect
R15945 T22134 T22131 relcl affect,profiles
R15946 T22135 T22137 amod immune,polarization
R15947 T22136 T22137 compound cell,polarization
R15949 T22137 T22134 dobj polarization,affect
R15950 T22138 T22140 nmod [,]
R15951 T22139 T22140 nummod 27,]
R15953 T22140 T22137 nmod ],polarization
R15954 T22141 T22140 punct ;,]
R15956 T22142 T22144 compound [,]
R15957 T22143 T22144 compound 28,]
R15961 T22144 T22140 conj ],]
R15963 T22145 T22144 punct ;,]
R15964 T22146 T22144 conj [,]
R15965 T22147 T22148 nummod 77,]
R15967 T22148 T22144 conj ],]
R15968 T22149 T22140 punct ;,]
R15970 T22150 T22152 nmod [,]
R15971 T22151 T22152 nummod 78,]
R15973 T22152 T22140 conj ],]
R15974 T22153 T22127 punct .,shown
R15976 T22154 T22161 advmod Interestingly,shown
R15977 T22155 T22157 compound C/EBP,β
R15978 T22156 T22157 punct -,β
R15980 T22157 T22161 nsubjpass β,shown
R15981 T22158 T22161 aux has,shown
R15983 T22159 T22161 advmod also,shown
R15984 T22160 T22161 auxpass been,shown
R15985 T22161 T22161 ROOT shown,shown
R15986 T22162 T22163 aux to,modulate
R15988 T22163 T22161 xcomp modulate,shown
R15989 T22164 T22165 amod cytokine,secretion
R15991 T22165 T22163 dobj secretion,modulate
R15992 T22166 T22163 prep from,modulate
R15993 T22167 T22168 amod immune,cells
R15995 T22168 T22166 pobj cells,from
R15996 T22169 T22163 punct ",",modulate
R15997 T22170 T22171 advmod thereby,modifying
R15998 T22171 T22161 advcl modifying,shown
R15999 T22172 T22178 ccomp their,[
R16001 T22173 T22178 ccomp phenotype,[
R16002 T22174 T22176 nmod [,]
R16005 T22175 T22176 nummod 27,]
R16007 T22176 T22173 appos ],phenotype
R16008 T22177 T22178 punct ;,[
R16009 T22178 T22181 nmod [,[
R16011 T22179 T22180 nummod 79,]
R16012 T22180 T22181 nmod ],[
R16014 T22181 T22171 dobj [,modifying
R16015 T22182 T22183 nummod 81,]
R16016 T22183 T22181 appos ],[
R16018 T22184 T22161 punct .,shown
R16019 T22185 T22186 poss Our,study
R16021 T22186 T22188 nsubj study,demonstrated
R16022 T22187 T22188 aux has,demonstrated
R16023 T22188 T22188 ROOT demonstrated,demonstrated
R16025 T22189 T22193 mark that,plays
R16026 T22190 T22192 compound C/EBP,β
R16028 T22191 T22192 punct -,β
R16029 T22192 T22193 nsubj β,plays
R16030 T22193 T22188 ccomp plays,demonstrated
R16032 T22194 T22196 det an,role
R16033 T22195 T22196 amod important,role
R16034 T22196 T22193 dobj role,plays
R16036 T22197 T22196 prep in,role
R16037 T22198 T22197 pcomp mediating,in
R16039 T22199 T22200 preconj both,constitutive
R16040 T22200 T22203 nmod constitutive,transcription
R16041 T22201 T22200 cc and,constitutive
R16043 T22202 T22200 conj LPS-induced,constitutive
R16044 T22203 T22198 dobj transcription,mediating
R16045 T22204 T22203 prep of,transcription
R16046 T22205 T22207 det the,gene
R16047 T22206 T22207 compound SerpinB2,gene
R16049 T22207 T22204 pobj gene,of
R16050 T22208 T22207 punct ",",gene
R16051 T22209 T22211 nsubj which,have
R16052 T22210 T22211 aux may,have
R16054 T22211 T22207 relcl have,gene
R16055 T22212 T22211 dobj implications,have
R16057 T22213 T22212 prep for,implications
R16058 T22214 T22216 det the,phenotype
R16059 T22215 T22216 amod inflammatory,phenotype
R16061 T22216 T22213 pobj phenotype,for
R16062 T22217 T22216 prep of,phenotype
R16063 T22218 T22217 pcomp infiltrating,of
R16065 T22219 T22220 amod immune,cells
R16067 T22220 T22218 dobj cells,infiltrating
R16069 T22221 T22218 prep in,infiltrating
R16071 T22222 T22224 det the,microenvironment
R16072 T22223 T22224 compound tumor,microenvironment
R16074 T22224 T22221 pobj microenvironment,in
R16075 T22225 T22188 punct .,demonstrated

2_test

Id Subject Object Predicate Lexical cue
23472114-20303878-87899194 211-212 20303878 denotes 2
23472114-16497591-87899195 216-218 16497591 denotes 74
23472114-18548086-87899196 382-384 18548086 denotes 77
23472114-18548086-87899197 512-514 18548086 denotes 77
23472114-17803913-87899198 656-658 17803913 denotes 79
T96736 211-212 20303878 denotes 2
T95677 216-218 16497591 denotes 74
T55278 382-384 18548086 denotes 77
T40452 512-514 18548086 denotes 77
T35828 656-658 17803913 denotes 79

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19926 914-930 NN denotes microenvironment
T19925 908-913 NN denotes tumor
T19924 904-907 DT denotes the
T19923 901-903 IN denotes in
T19922 895-900 NN denotes cells
T19921 888-894 JJ denotes immune
T19920 875-887 VB denotes infiltrating
T19919 872-874 IN denotes of
T19918 862-871 NN denotes phenotype
T19917 849-861 JJ denotes inflammatory
T19916 845-848 DT denotes the
T19915 841-844 IN denotes for
T19914 828-840 NN denotes implications
T19913 823-827 VB denotes have
T19912 819-822 MD denotes may
T19911 813-818 WDT denotes which
T19910 811-812 -COMMA- denotes ,
T19909 807-811 NN denotes gene
T19908 798-806 NN denotes SerpinB2
T19907 794-797 DT denotes the
T19906 791-793 IN denotes of
T19905 777-790 NN denotes transcription
T19904 765-776 JJ denotes LPS-induced
T19903 761-764 CC denotes and
T19902 748-760 JJ denotes constitutive
T19901 743-747 CC denotes both
T19900 733-742 VB denotes mediating
T19899 730-732 IN denotes in
T19898 725-729 NN denotes role
T19897 715-724 JJ denotes important
T19896 712-714 DT denotes an
T19895 706-711 VB denotes plays
T19894 698-705 NN denotes C/EBP-β
T19893 693-697 IN denotes that
T19892 680-692 VB denotes demonstrated
T19891 676-679 VB denotes has
T19890 670-675 NN denotes study
T19889 666-669 PRP-DOLLAR- denotes Our
T19888 663-664 -RRB- denotes ]
T19887 661-663 CD denotes 81
T19886 660-661 -LRB- denotes [
T19885 659-660 CD denotes –
T19884 658-659 -RRB- denotes ]
T19883 656-658 CD denotes 79
T19882 655-656 -LRB- denotes [
T19881 653-654 -COLON- denotes ;
T19880 652-653 -RRB- denotes ]
T19879 650-652 CD denotes 27
T19878 649-650 -LRB- denotes [
T19877 639-648 NN denotes phenotype
T19876 633-638 PRP-DOLLAR- denotes their
T19875 623-632 VB denotes modifying
T19874 615-622 RB denotes thereby
T19770 68-78 RB denotes integrally
T19769 65-67 VB denotes is
T19768 55-64 NN denotes infection
T19767 44-54 JJ denotes persistent
T19766 39-43 IN denotes that
T19765 30-38 JJ denotes apparent
T19764 23-29 VB denotes become
T19763 19-22 VB denotes has
T19762 16-18 PRP denotes it
T19761 10-15 NN denotes years
T19760 3-9 JJ denotes recent
T19759 0-2 IN denotes In
T19873 613-614 -COMMA- denotes ,
T19872 608-613 NN denotes cells
T19871 601-607 JJ denotes immune
T19870 596-600 IN denotes from
T19869 586-595 NN denotes secretion
T19868 577-585 NN denotes cytokine
T19867 568-576 VB denotes modulate
T19866 565-567 TO denotes to
T19865 559-564 VB denotes shown
T19864 554-558 VB denotes been
T19863 549-553 RB denotes also
T19862 545-548 VB denotes has
T19861 537-544 NN denotes C/EBP-β
T19860 523-536 RB denotes Interestingly
T19859 520-521 -RRB- denotes ]
T19858 518-520 CD denotes 78
T19857 517-518 -LRB- denotes [
T19856 515-516 -COLON- denotes ;
T19855 514-515 -RRB- denotes ]
T19854 512-514 CD denotes 77
T19853 511-512 -LRB- denotes [
T19852 509-510 -COLON- denotes ;
T19851 508-509 -RRB- denotes ]
T19850 506-508 CD denotes 28
T19849 505-506 -LRB- denotes [
T19848 503-504 -COLON- denotes ;
T19847 502-503 -RRB- denotes ]
T19846 500-502 CD denotes 27
T19845 499-500 -LRB- denotes [
T19844 486-498 NN denotes polarization
T19843 481-485 NN denotes cell
T19842 474-480 JJ denotes immune
T19841 467-473 VB denotes affect
T19840 463-466 MD denotes can
T19839 457-462 WDT denotes which
T19838 448-456 NN denotes profiles
T19837 439-447 NN denotes cytokine
T19836 430-438 VB denotes modulate
T19835 427-429 TO denotes to
T19834 421-426 VB denotes shown
T19833 416-420 VB denotes been
T19832 412-415 VB denotes has
T19831 403-411 NN denotes SerpinB2
T19830 400-402 IN denotes of
T19829 391-399 NN denotes presence
T19828 387-390 DT denotes The
T19827 384-385 -RRB- denotes ]
T19826 382-384 CD denotes 77
T19825 381-382 -LRB- denotes [
T19824 376-380 NN denotes type
T19823 369-375 NN denotes cancer
T19822 366-368 IN denotes on
T19821 356-365 VB denotes depending
T19820 346-355 NN denotes indicator
T19819 335-345 JJ denotes prognostic
T19818 323-334 JJ denotes unfavorable
T19817 320-322 CC denotes or
T19816 310-319 JJ denotes favorable
T19815 308-309 DT denotes a
T19814 305-307 VB denotes is
T19813 301-304 CC denotes and
T19812 299-300 -COMMA- denotes ,
T19811 293-299 NN denotes cancer
T19810 289-292 CC denotes and
T19809 276-288 NN denotes inflammation
T19808 271-275 CC denotes both
T19807 266-270 IN denotes with
T19806 255-265 VB denotes associated
T19805 250-254 VB denotes been
T19804 246-249 VB denotes has
T19803 235-245 NN denotes expression
T19802 226-234 NN denotes SerpinB2
T19801 223-224 -RRB- denotes ]
T19800 221-223 CD denotes 76
T19799 220-221 -LRB- denotes [
T19798 219-220 CD denotes –
T19797 218-219 -RRB- denotes ]
T19796 216-218 CD denotes 74
T19795 215-216 -LRB- denotes [
T19794 213-214 -COLON- denotes ;
T19793 212-213 -RRB- denotes ]
T19792 211-212 CD denotes 2
T19791 210-211 -LRB- denotes [
T19790 198-209 NN denotes progression
T19789 191-197 NN denotes cancer
T19788 181-190 VB denotes attenuate
T19787 178-180 CC denotes or
T19786 170-177 VB denotes promote
T19785 163-169 CC denotes either
T19784 159-162 MD denotes can
T19783 147-158 NN denotes macrophages
T19782 144-146 IN denotes as
T19781 139-143 JJ denotes such
T19780 133-138 NN denotes cells
T19779 126-132 JJ denotes immune
T19778 122-125 CC denotes and
T19777 120-121 -COMMA- denotes ,
T19776 114-120 NN denotes cancer
T19775 110-113 CC denotes and
T19774 97-109 NN denotes inflammation
T19773 89-96 JJ denotes chronic
T19772 86-88 TO denotes to
T19771 79-85 VB denotes linked
R14253 T19761 T19759 arg2Of years,In
R14254 T19761 T19760 arg1Of years,recent
R14255 T19764 T19759 arg1Of become,In
R14256 T19764 T19763 arg2Of become,has
R14257 T19765 T19764 arg2Of apparent,become
R14258 T19768 T19767 arg1Of infection,persistent
R14259 T19768 T19769 arg1Of infection,is
R14260 T19768 T19771 arg2Of infection,linked
R14261 T19771 T19769 arg2Of linked,is
R14262 T19771 T19770 arg1Of linked,integrally
R14263 T19771 T19772 arg1Of linked,to
R14264 T19771 T19778 arg1Of linked,and
R14265 T19774 T19775 arg1Of inflammation,and
R14266 T19775 T19772 arg2Of and,to
R14267 T19775 T19773 arg1Of and,chronic
R14268 T19776 T19775 arg2Of cancer,and
R14269 T19778 T19762 arg1Of and,it
R14270 T19778 T19763 arg1Of and,has
R14271 T19778 T19764 arg1Of and,become
R14272 T19778 T19765 arg1Of and,apparent
R14273 T19778 T19766 arg1Of and,that
R14274 T19778 T19777 arg1Of and,","
R14275 T19780 T19779 arg1Of cells,immune
R14276 T19780 T19782 arg1Of cells,as
R14277 T19780 T19784 arg1Of cells,can
R14278 T19780 T19786 arg1Of cells,promote
R14279 T19780 T19788 arg1Of cells,attenuate
R14280 T19782 T19781 arg1Of as,such
R14281 T19783 T19782 arg2Of macrophages,as
R14282 T19786 T19787 arg1Of promote,or
R14283 T19787 T19778 arg2Of or,and
R14284 T19787 T19784 arg2Of or,can
R14285 T19787 T19785 arg1Of or,either
R14286 T19788 T19787 arg2Of attenuate,or
R14287 T19790 T19789 arg1Of progression,cancer
R14288 T19790 T19791 arg1Of progression,[
R14289 T19790 T19794 arg1Of progression,;
R14290 T19792 T19791 arg2Of 2,[
R14291 T19793 T19791 arg3Of ],[
R14292 T19794 T19786 arg2Of ;,promote
R14293 T19794 T19788 arg2Of ;,attenuate
R14294 T19796 T19795 arg2Of 74,[
R14295 T19797 T19795 arg3Of ],[
R14296 T19798 T19794 arg2Of –,;
R14297 T19798 T19795 arg1Of –,[
R14298 T19798 T19799 arg1Of –,[
R14299 T19800 T19799 arg2Of 76,[
R14300 T19801 T19799 arg3Of ],[
R14301 T19803 T19802 arg1Of expression,SerpinB2
R14302 T19803 T19804 arg1Of expression,has
R14303 T19803 T19805 arg1Of expression,been
R14304 T19803 T19806 arg2Of expression,associated
R14305 T19803 T19814 arg1Of expression,is
R14306 T19806 T19804 arg2Of associated,has
R14307 T19806 T19805 arg2Of associated,been
R14308 T19806 T19807 arg1Of associated,with
R14309 T19806 T19813 arg1Of associated,and
R14310 T19809 T19810 arg1Of inflammation,and
R14311 T19810 T19807 arg2Of and,with
R14312 T19810 T19808 arg1Of and,both
R14313 T19811 T19810 arg2Of cancer,and
R14314 T19813 T19812 arg1Of and,","
R14315 T19813 T19825 arg1Of and,[
R14316 T19814 T19813 arg2Of is,and
R14317 T19814 T19821 arg1Of is,depending
R14318 T19816 T19817 arg1Of favorable,or
R14319 T19818 T19817 arg2Of unfavorable,or
R14320 T19820 T19814 arg2Of indicator,is
R14321 T19820 T19815 arg1Of indicator,a
R14322 T19820 T19816 arg1Of indicator,favorable
R14323 T19820 T19818 arg1Of indicator,unfavorable
R14324 T19820 T19819 arg1Of indicator,prognostic
R14325 T19822 T19821 arg2Of on,depending
R14326 T19824 T19822 arg2Of type,on
R14327 T19824 T19823 arg1Of type,cancer
R14328 T19826 T19825 arg2Of 77,[
R14329 T19827 T19825 arg3Of ],[
R14330 T19829 T19828 arg1Of presence,The
R14331 T19829 T19830 arg1Of presence,of
R14332 T19829 T19832 arg1Of presence,has
R14333 T19829 T19833 arg1Of presence,been
R14334 T19829 T19834 arg2Of presence,shown
R14335 T19829 T19836 arg1Of presence,modulate
R14336 T19831 T19830 arg2Of SerpinB2,of
R14337 T19834 T19832 arg2Of shown,has
R14338 T19834 T19833 arg2Of shown,been
R14339 T19836 T19834 arg3Of modulate,shown
R14340 T19836 T19835 arg1Of modulate,to
R14341 T19838 T19836 arg2Of profiles,modulate
R14342 T19838 T19837 arg1Of profiles,cytokine
R14343 T19838 T19839 arg1Of profiles,which
R14344 T19838 T19840 arg1Of profiles,can
R14345 T19838 T19841 arg1Of profiles,affect
R14346 T19841 T19840 arg2Of affect,can
R14347 T19841 T19845 arg1Of affect,[
R14348 T19841 T19848 arg1Of affect,;
R14349 T19841 T19849 arg1Of affect,[
R14350 T19841 T19852 arg1Of affect,;
R14351 T19841 T19853 arg1Of affect,[
R14352 T19841 T19856 arg1Of affect,;
R14353 T19841 T19857 arg1Of affect,[
R14354 T19844 T19841 arg2Of polarization,affect
R14355 T19844 T19842 arg1Of polarization,immune
R14356 T19844 T19843 arg1Of polarization,cell
R14357 T19846 T19845 arg2Of 27,[
R14358 T19847 T19845 arg3Of ],[
R14359 T19850 T19849 arg2Of 28,[
R14360 T19851 T19849 arg3Of ],[
R14361 T19854 T19853 arg2Of 77,[
R14362 T19855 T19853 arg3Of ],[
R14363 T19858 T19857 arg2Of 78,[
R14364 T19859 T19857 arg3Of ],[
R14365 T19861 T19862 arg1Of C/EBP-β,has
R14366 T19861 T19864 arg1Of C/EBP-β,been
R14367 T19861 T19865 arg2Of C/EBP-β,shown
R14368 T19861 T19867 arg1Of C/EBP-β,modulate
R14369 T19861 T19875 arg1Of C/EBP-β,modifying
R14370 T19865 T19860 arg1Of shown,Interestingly
R14371 T19865 T19862 arg2Of shown,has
R14372 T19865 T19863 arg1Of shown,also
R14373 T19865 T19864 arg2Of shown,been
R14374 T19867 T19865 arg3Of modulate,shown
R14375 T19867 T19866 arg1Of modulate,to
R14376 T19867 T19870 arg1Of modulate,from
R14377 T19867 T19873 arg1Of modulate,","
R14378 T19867 T19875 modOf modulate,modifying
R14379 T19867 T19886 arg1Of modulate,[
R14380 T19869 T19867 arg2Of secretion,modulate
R14381 T19869 T19868 arg1Of secretion,cytokine
R14382 T19872 T19870 arg2Of cells,from
R14383 T19872 T19871 arg1Of cells,immune
R14384 T19875 T19874 arg1Of modifying,thereby
R14385 T19875 T19881 arg1Of modifying,;
R14386 T19875 T19882 arg1Of modifying,[
R14387 T19877 T19875 arg2Of phenotype,modifying
R14388 T19877 T19876 arg1Of phenotype,their
R14389 T19877 T19878 arg1Of phenotype,[
R14390 T19879 T19878 arg2Of 27,[
R14391 T19880 T19878 arg3Of ],[
R14392 T19883 T19882 arg2Of 79,[
R14393 T19884 T19882 arg3Of ],[
R14394 T19885 T19867 arg3Of –,modulate
R14395 T19887 T19886 arg2Of 81,[
R14396 T19888 T19886 arg3Of ],[
R14397 T19890 T19889 arg1Of study,Our
R14398 T19890 T19891 arg1Of study,has
R14399 T19890 T19892 arg1Of study,demonstrated
R14400 T19892 T19891 arg2Of demonstrated,has
R14401 T19894 T19895 arg1Of C/EBP-β,plays
R14402 T19895 T19892 arg2Of plays,demonstrated
R14403 T19895 T19893 arg1Of plays,that
R14404 T19898 T19895 arg2Of role,plays
R14405 T19898 T19896 arg1Of role,an
R14406 T19898 T19897 arg1Of role,important
R14407 T19898 T19899 arg1Of role,in
R14408 T19898 T19910 arg1Of role,","
R14409 T19898 T19911 arg1Of role,which
R14410 T19898 T19912 arg1Of role,may
R14411 T19898 T19913 arg1Of role,have
R14412 T19900 T19899 arg2Of mediating,in
R14413 T19902 T19903 arg1Of constitutive,and
R14414 T19903 T19901 arg1Of and,both
R14415 T19904 T19903 arg2Of LPS-induced,and
R14416 T19905 T19900 arg2Of transcription,mediating
R14417 T19905 T19902 arg1Of transcription,constitutive
R14418 T19905 T19904 arg1Of transcription,LPS-induced
R14419 T19905 T19906 arg1Of transcription,of
R14420 T19909 T19906 arg2Of gene,of
R14421 T19909 T19907 arg1Of gene,the
R14422 T19909 T19908 arg1Of gene,SerpinB2
R14423 T19913 T19912 arg2Of have,may
R14424 T19914 T19913 arg2Of implications,have
R14425 T19914 T19915 arg1Of implications,for
R14426 T19918 T19915 arg2Of phenotype,for
R14427 T19918 T19916 arg1Of phenotype,the
R14428 T19918 T19917 arg1Of phenotype,inflammatory
R14429 T19918 T19919 arg1Of phenotype,of
R14430 T19920 T19919 arg2Of infiltrating,of
R14431 T19920 T19923 arg1Of infiltrating,in
R14432 T19922 T19920 arg2Of cells,infiltrating
R14433 T19922 T19921 arg1Of cells,immune
R14434 T19926 T19923 arg2Of microenvironment,in
R14435 T19926 T19924 arg1Of microenvironment,the
R14436 T19926 T19925 arg1Of microenvironment,tumor

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18783 798-806 Protein denotes SerpinB2
T18782 698-705 Protein denotes C/EBP-β
T18781 537-544 Protein denotes C/EBP-β
T18780 403-411 Protein denotes SerpinB2
T18779 226-234 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20267 537-544 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T20238 798-806 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20237 403-411 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20236 226-234 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T18843 888-913 http://purl.obolibrary.org/obo/GO_0002418 denotes immune cells in the tumor
T18842 586-595 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T18841 577-595 http://purl.obolibrary.org/obo/GO_0050663 denotes cytokine secretion
T18840 481-498 http://purl.obolibrary.org/obo/GO_0030010 denotes cell polarization
T18823 276-288 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T18822 97-109 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T18806 777-790 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T18853 895-900 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18852 608-613 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18851 481-485 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T18512 666-931 Sentence denotes Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment.
T18511 523-665 Sentence denotes Interestingly C/EBP-β has also been shown to modulate cytokine secretion from immune cells, thereby modifying their phenotype [27]; [79]–[81].
T18510 387-522 Sentence denotes The presence of SerpinB2 has been shown to modulate cytokine profiles which can affect immune cell polarization [27]; [28]; [77]; [78].
T18509 226-386 Sentence denotes SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77].
T18508 0-225 Sentence denotes In recent years it has become apparent that persistent infection is integrally linked to chronic inflammation and cancer, and immune cells such as macrophages can either promote or attenuate cancer progression [2]; [74]–[76].
T273 0-225 Sentence denotes In recent years it has become apparent that persistent infection is integrally linked to chronic inflammation and cancer, and immune cells such as macrophages can either promote or attenuate cancer progression [2]; [74]–[76].
T274 226-386 Sentence denotes SerpinB2 expression has been associated with both inflammation and cancer, and is a favorable or unfavorable prognostic indicator depending on cancer type [77].
T275 387-522 Sentence denotes The presence of SerpinB2 has been shown to modulate cytokine profiles which can affect immune cell polarization [27]; [28]; [77]; [78].
T276 523-665 Sentence denotes Interestingly C/EBP-β has also been shown to modulate cytokine secretion from immune cells, thereby modifying their phenotype [27]; [79]–[81].
T277 666-931 Sentence denotes Our study has demonstrated that C/EBP-β plays an important role in mediating both constitutive and LPS-induced transcription of the SerpinB2 gene, which may have implications for the inflammatory phenotype of infiltrating immune cells in the tumor microenvironment.

simple1

Id Subject Object Predicate Lexical cue
T18920 798-806 Protein denotes SerpinB2
T18919 698-705 Protein denotes C/EBP-β
T18918 537-544 Protein denotes C/EBP-β
T18917 403-411 Protein denotes SerpinB2
T18916 226-234 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20199 765-776 Positive_regulation denotes LPS-induced
T20198 777-790 Transcription denotes transcription
T20197 235-245 Gene_expression denotes expression
T20128 798-806 Protein denotes SerpinB2
T20127 698-705 Protein denotes C/EBP-β
T20126 537-544 Protein denotes C/EBP-β
T20125 403-411 Protein denotes SerpinB2
T20124 226-234 Protein denotes SerpinB2
R14567 T20124 T20197 themeOf SerpinB2,expression
R14568 T20128 T20198 themeOf SerpinB2,transcription
R14610 T20198 T20199 themeOf transcription,LPS-induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20638 777-790 Transcription denotes transcription
T20637 765-776 Positive_regulation denotes LPS-induced
T20636 235-245 Gene_expression denotes expression
T20578 798-806 Protein denotes SerpinB2
T20577 698-705 Protein denotes C/EBP-β
T20576 537-544 Protein denotes C/EBP-β
T20575 403-411 Protein denotes SerpinB2
T20574 226-234 Protein denotes SerpinB2
R14776 T20574 T20636 themeOf SerpinB2,expression
R14777 T20578 T20638 themeOf SerpinB2,transcription
R14800 T20638 T20637 themeOf transcription,LPS-induced

DLUT931

Id Subject Object Predicate Lexical cue
T20418 765-776 Positive_regulation denotes LPS-induced
T20417 777-790 Transcription denotes transcription
T20416 255-265 Binding denotes associated
T20415 235-245 Gene_expression denotes expression
T20352 798-806 Protein denotes SerpinB2
T20351 698-705 Protein denotes C/EBP-β
T20350 537-544 Protein denotes C/EBP-β
T20349 403-411 Protein denotes SerpinB2
T20348 226-234 Protein denotes SerpinB2
R14661 T20348 T20415 themeOf SerpinB2,expression
R14662 T20348 T20416 themeOf SerpinB2,associated
R14663 T20352 T20417 themeOf SerpinB2,transcription
R14698 T20417 T20418 themeOf transcription,LPS-induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21111 748-811 Transcription denotes constitutive and LPS-induced transcription of the SerpinB2 gene
T21087 733-811 Regulation denotes mediating both constitutive and LPS-induced transcription of the SerpinB2 gene
T21079 601-614 Entity denotes immune cells,
T21039 537-544 Protein denotes C/EBP-β
T21018 798-806 Protein denotes SerpinB2
T20976 439-503 Protein denotes cytokine profiles which can affect immune cell polarization [27]
T20946 126-158 Entity denotes immune cells such as macrophages
T20929 698-705 Protein denotes C/EBP-β
T20921 400-411 Protein denotes of SerpinB2
T20916 765-776 Entity denotes LPS-induced
T20913 226-234 Protein denotes SerpinB2
T20954 791-811 Protein denotes of the SerpinB2 gene
T20948 126-146 Entity denotes immune cells such as
R14945 T20954 T21111 themeOf of the SerpinB2 gene,constitutive and LPS-induced transcription of the SerpinB2 gene
R14979 T21111 T21087 themeOf constitutive and LPS-induced transcription of the SerpinB2 gene,mediating both constitutive and LPS-induced transcription of the SerpinB2 gene

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20765 733-742 Positive_regulation denotes mediating
T20764 777-790 Transcription denotes transcription
T20763 798-811 Protein denotes SerpinB2 gene
T20762 698-705 Protein denotes C/EBP-β
T20761 537-544 Protein denotes C/EBP-β
T20760 403-411 Protein denotes SerpinB2
T20759 235-245 Gene_expression denotes expression
T20758 226-234 Protein denotes SerpinB2
R14862 T20758 T20759 themeOf SerpinB2,expression
R14863 T20762 T20765 causeOf C/EBP-β,mediating
R14864 T20763 T20764 themeOf SerpinB2 gene,transcription
R14865 T20764 T20765 themeOf transcription,mediating

testone

Id Subject Object Predicate Lexical cue
T18278 777-790 Transcription denotes transcription
T18277 769-776 Positive_regulation denotes induced
T18231 798-806 Protein denotes SerpinB2
T18230 698-705 Protein denotes C/EBP-β
T18229 537-544 Protein denotes C/EBP-β
T18228 403-411 Protein denotes SerpinB2
T18227 226-234 Protein denotes SerpinB2
R13142 T18231 T18278 themeOf SerpinB2,transcription
R13156 T18278 T18277 themeOf transcription,induced

test3

Id Subject Object Predicate Lexical cue
T18472 798-806 Protein denotes SerpinB2
T18471 777-790 Transcription denotes transcription
T18470 769-776 Positive_regulation denotes induced
T18469 698-705 Protein denotes C/EBP-β
T18468 537-544 Protein denotes C/EBP-β
T18467 403-411 Protein denotes SerpinB2
T18466 235-245 Gene_expression denotes expression
T18465 226-234 Protein denotes SerpinB2
T18348 798-806 Protein denotes SerpinB2
T18347 698-705 Protein denotes C/EBP-β
T18346 537-544 Protein denotes C/EBP-β
T18345 403-411 Protein denotes SerpinB2
T18344 226-234 Protein denotes SerpinB2
R13218 T18465 T18466 themeOf SerpinB2,expression
R13219 T18471 T18470 themeOf transcription,induced
R13220 T18472 T18471 themeOf SerpinB2,transcription