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PMC:3589482 / 45612-45776 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T22034 163-164 . denotes .
T22033 162-163 NNP denotes ]
T22032 160-162 CD denotes 73
T22031 159-160 NNP denotes [
T22030 150-158 NNS denotes pathways
T22029 140-149 VBG denotes signaling
T22028 125-139 JJ denotes IFNγ-regulated
T22027 121-124 IN denotes for
T22026 111-120 JJ denotes important
T22025 107-110 VBD denotes was
T22024 103-106 NNP denotes S64
T22023 101-102 NN denotes β
T22022 100-101 : denotes -
T22021 95-100 NNP denotes C/EBP
T22020 92-94 IN denotes of
T22019 74-91 NN denotes dephosphorylation
T22018 67-73 VBN denotes driven
T22017 66-67 : denotes -
T22016 65-66 -RRB- denotes )
T22015 61-65 CD denotes MLK3
T22014 60-61 -LRB- denotes (
T22013 51-59 JJ denotes kinase-3
T22012 43-50 NN denotes lineage
T22011 37-42 JJ denotes Mixed
T22010 32-36 IN denotes that
T22009 19-31 VBD denotes demonstrated
T22008 8-18 NNS denotes colleagues
T22007 4-7 CC denotes and
T22006 0-3 NNP denotes Roy
R15975 T22006 T22009 nsubj Roy,demonstrated
R15979 T22007 T22006 cc and,Roy
R15982 T22008 T22006 conj colleagues,Roy
R15987 T22009 T22009 ROOT demonstrated,demonstrated
R15990 T22010 T22025 mark that,was
R15994 T22011 T22012 amod Mixed,lineage
R16000 T22012 T22018 npadvmod lineage,driven
R16003 T22013 T22012 amod kinase-3,lineage
R16004 T22014 T22013 punct (,kinase-3
R16006 T22015 T22013 appos MLK3,kinase-3
R16010 T22016 T22013 punct ),kinase-3
R16013 T22017 T22018 punct -,driven
R16017 T22018 T22019 amod driven,dephosphorylation
R16020 T22019 T22025 nsubj dephosphorylation,was
R16024 T22020 T22019 prep of,dephosphorylation
R16027 T22021 T22020 pobj C/EBP,of
R16031 T22022 T22023 punct -,β
R16035 T22023 T22024 compound β,S64
R16038 T22024 T22019 appos S64,dephosphorylation
R16042 T22025 T22009 ccomp was,demonstrated
R16048 T22026 T22025 acomp important,was
R16053 T22027 T22026 prep for,important
R16056 T22028 T22030 amod IFNγ-regulated,pathways
R16060 T22029 T22030 compound signaling,pathways
R16064 T22030 T22027 pobj pathways,for
R16066 T22031 T22033 nmod [,]
R16068 T22032 T22033 nummod 73,]
R16070 T22033 T22030 appos ],pathways
R16073 T22034 T22009 punct .,demonstrated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19743 162-163 -RRB- denotes ]
T19742 160-162 CD denotes 73
T19741 159-160 -LRB- denotes [
T19740 150-158 NN denotes pathways
T19739 140-149 NN denotes signaling
T19738 125-139 JJ denotes IFNγ-regulated
T19737 121-124 IN denotes for
T19736 111-120 JJ denotes important
T19735 107-110 VB denotes was
T19734 103-106 NN denotes S64
T19733 95-102 NN denotes C/EBP-β
T19732 92-94 IN denotes of
T19731 74-91 NN denotes dephosphorylation
T19730 66-73 JJ denotes -driven
T19729 65-66 -RRB- denotes )
T19728 61-65 NN denotes MLK3
T19727 60-61 -LRB- denotes (
T19726 51-59 NN denotes kinase-3
T19725 43-50 NN denotes lineage
T19724 37-42 JJ denotes Mixed
T19723 32-36 IN denotes that
T19722 19-31 VB denotes demonstrated
T19721 8-18 NN denotes colleagues
T19720 4-7 CC denotes and
T19719 0-3 NNP denotes Roy
R14212 T19719 T19720 arg1Of Roy,and
R14213 T19720 T19722 arg1Of and,demonstrated
R14214 T19721 T19720 arg2Of colleagues,and
R14215 T19728 T19727 arg2Of MLK3,(
R14216 T19729 T19727 arg3Of ),(
R14217 T19731 T19724 arg1Of dephosphorylation,Mixed
R14218 T19731 T19725 arg1Of dephosphorylation,lineage
R14219 T19731 T19726 arg1Of dephosphorylation,kinase-3
R14220 T19731 T19727 arg1Of dephosphorylation,(
R14221 T19731 T19730 arg1Of dephosphorylation,-driven
R14222 T19731 T19732 arg1Of dephosphorylation,of
R14223 T19731 T19735 arg1Of dephosphorylation,was
R14224 T19731 T19736 arg1Of dephosphorylation,important
R14225 T19734 T19732 arg2Of S64,of
R14226 T19734 T19733 arg1Of S64,C/EBP-β
R14227 T19735 T19722 arg2Of was,demonstrated
R14228 T19735 T19723 arg1Of was,that
R14229 T19736 T19735 arg2Of important,was
R14230 T19736 T19737 arg1Of important,for
R14231 T19740 T19737 arg2Of pathways,for
R14232 T19740 T19738 arg1Of pathways,IFNγ-regulated
R14233 T19740 T19739 arg1Of pathways,signaling
R14234 T19740 T19741 arg1Of pathways,[
R14235 T19742 T19741 arg2Of 73,[
R14236 T19743 T19741 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18775 61-65 Protein denotes MLK3
T18774 37-59 Protein denotes Mixed lineage kinase-3
T18777 125-129 Protein denotes IFNγ
T18776 95-102 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20266 95-102 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-BP

Id Subject Object Predicate Lexical cue
T18838 140-158 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathways
T18836 74-91 http://purl.obolibrary.org/obo/GO_0016311 denotes dephosphorylation
T18808 140-149 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

sentences

Id Subject Object Predicate Lexical cue
T18506 0-164 Sentence denotes Roy and colleagues demonstrated that Mixed lineage kinase-3 (MLK3)-driven dephosphorylation of C/EBP-β S64 was important for IFNγ-regulated signaling pathways [73].
T271 0-164 Sentence denotes Roy and colleagues demonstrated that Mixed lineage kinase-3 (MLK3)-driven dephosphorylation of C/EBP-β S64 was important for IFNγ-regulated signaling pathways [73].

simple1

Id Subject Object Predicate Lexical cue
T18914 125-129 Protein denotes IFNγ
T18913 95-102 Protein denotes C/EBP-β
T18912 61-65 Protein denotes MLK3
T18911 37-59 Protein denotes Mixed lineage kinase-3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20196 130-139 Regulation denotes regulated
T20195 74-91 Phosphorylation denotes dephosphorylation
T20122 125-129 Protein denotes IFNγ
T20121 95-102 Protein denotes C/EBP-β
T20120 61-65 Protein denotes MLK3
T20119 37-59 Protein denotes Mixed lineage kinase-3
R14565 T20121 T20195 themeOf C/EBP-β,dephosphorylation
R14566 T20122 T20196 themeOf IFNγ,regulated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20635 74-91 Phosphorylation denotes dephosphorylation
T20572 125-129 Protein denotes IFNγ
T20571 95-102 Protein denotes C/EBP-β
T20570 61-65 Protein denotes MLK3
T20569 37-59 Protein denotes Mixed lineage kinase-3
R14775 T20571 T20635 themeOf C/EBP-β,dephosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T20414 74-91 Phosphorylation denotes dephosphorylation
T20346 125-129 Protein denotes IFNγ
T20345 95-102 Protein denotes C/EBP-β
T20344 61-65 Protein denotes MLK3
T20343 37-59 Protein denotes Mixed lineage kinase-3
R14658 T20343 T20414 themeOf Mixed lineage kinase-3,dephosphorylation
R14659 T20344 T20414 themeOf MLK3,dephosphorylation
R14660 T20345 T20414 themeOf C/EBP-β,dephosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21044 95-102 Protein denotes C/EBP-β
T21033 92-106 Entity denotes of C/EBP-β S64
T21011 125-139 Protein denotes IFNγ-regulated
T20925 32-66 Protein denotes that Mixed lineage kinase-3 (MLK3)
T20951 61-65 Protein denotes MLK3

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20756 74-91 Phosphorylation denotes dephosphorylation
T20755 74-91 Phosphorylation denotes dephosphorylation
T20754 74-91 Phosphorylation denotes dephosphorylation
T20753 125-129 Protein denotes IFNγ
T20752 95-106 Protein denotes C/EBP-β S64
T20751 61-65 Protein denotes MLK3
T20750 37-59 Protein denotes Mixed lineage kinase-3
R14859 T20750 T20754 themeOf Mixed lineage kinase-3,dephosphorylation
R14860 T20751 T20755 themeOf MLK3,dephosphorylation
R14861 T20752 T20756 themeOf C/EBP-β S64,dephosphorylation

testone

Id Subject Object Predicate Lexical cue
T18225 125-129 Protein denotes IFNγ
T18224 95-102 Protein denotes C/EBP-β
T18223 61-65 Protein denotes MLK3
T18222 37-59 Protein denotes Mixed lineage kinase-3
R13141 T18223 T18222 equivalentTo MLK3,Mixed lineage kinase-3

test3

Id Subject Object Predicate Lexical cue
T18463 125-129 Protein denotes IFNγ
T18462 95-102 Protein denotes C/EBP-β
T18461 61-65 Protein denotes MLK3
T18460 37-59 Protein denotes Mixed lineage kinase-3
T18340 61-65 Protein denotes MLK3
T18339 37-59 Protein denotes Mixed lineage kinase-3
T18342 125-129 Protein denotes IFNγ
T18341 95-102 Protein denotes C/EBP-β
R13217 T18461 T18460 equivalentTo MLK3,Mixed lineage kinase-3