> top > docs > PMC:3589482 > spans > 44565-44876 > annotations

PMC:3589482 / 44565-44876 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21884 310-311 . denotes .
T21883 305-310 NNS denotes cells
T21882 302-304 CD denotes .7
T21881 296-302 NNP denotes RAW264
T21880 293-295 IN denotes of
T21879 281-292 NN denotes stimulation
T21878 277-280 NNP denotes LPS
T21877 267-276 VBG denotes following
T21876 258-266 VB denotes decrease
T21875 255-257 TO denotes to
T21874 246-254 VBN denotes observed
T21873 242-245 VBD denotes was
T21872 233-241 NN denotes promoter
T21871 224-232 NNP denotes SerpinB2
T21870 220-223 DT denotes the
T21869 217-219 TO denotes to
T21868 211-216 NNP denotes βT217
T21867 210-211 : denotes -
T21866 205-210 NNP denotes C/EBP
T21865 202-204 IN denotes of
T21864 190-201 NN denotes recruitment
T21863 183-189 IN denotes though
T21862 178-182 RB denotes even
T21861 176-177 , denotes ,
T21860 175-176 NN denotes β
T21859 174-175 : denotes -
T21858 169-174 NNP denotes C/EBP
T21857 159-168 JJ denotes wild-type
T21856 156-158 IN denotes of
T21855 151-155 DT denotes that
T21854 146-150 IN denotes over
T21853 137-145 NN denotes activity
T21852 128-136 NN denotes promoter
T21851 119-127 JJ denotes proximal
T21850 110-118 NNP denotes SerpinB2
T21849 101-109 VB denotes increase
T21848 97-100 RB denotes not
T21847 93-96 VBD denotes did
T21846 88-92 NNS denotes MEFs
T21845 86-87 CD denotes
T21844 85-86 VBD denotes /
T21843 84-85 NNP denotes
T21842 79-84 NNP denotes Cebpb
T21841 76-78 IN denotes in
T21840 74-75 , denotes ,
T21839 68-74 NNP denotes βT217A
T21838 63-68 NNP denotes C/EBP
T21837 61-62 , denotes ,
T21836 55-61 JJ denotes mutant
T21835 50-54 NN denotes site
T21834 33-49 NN denotes phospho-acceptor
T21833 31-32 NN denotes β
T21832 30-31 : denotes -
T21831 25-30 NNP denotes C/EBP
T21830 23-24 DT denotes a
T21829 20-22 IN denotes of
T21828 9-19 NN denotes expression
T21827 7-8 , denotes ,
T21826 0-7 RB denotes However
R15644 T21826 T21844 advmod However,/
R15645 T21827 T21844 punct ",",/
R15648 T21828 T21844 nsubj expression,/
R15649 T21829 T21828 prep of,expression
R15651 T21830 T21835 det a,site
R15652 T21831 T21835 nmod C/EBP,site
R15654 T21832 T21833 punct -,β
R15655 T21833 T21835 nmod β,site
R15657 T21834 T21835 compound phospho-acceptor,site
R15658 T21835 T21829 pobj site,of
R15659 T21836 T21835 amod mutant,site
R15661 T21837 T21839 punct ",",βT217A
R15662 T21838 T21839 compound C/EBP,βT217A
R15664 T21839 T21828 appos βT217A,expression
R15665 T21840 T21839 punct ",",βT217A
R15667 T21841 T21839 prep in,βT217A
R15668 T21842 T21843 compound Cebpb,−
R15669 T21843 T21841 pobj −,in
R15671 T21844 T21844 ROOT /,/
R15672 T21845 T21846 nummod −,MEFs
R15674 T21846 T21849 nsubj MEFs,increase
R15675 T21847 T21849 aux did,increase
R15676 T21848 T21849 neg not,increase
R15678 T21849 T21844 ccomp increase,/
R15679 T21850 T21853 nmod SerpinB2,activity
R15681 T21851 T21853 amod proximal,activity
R15685 T21852 T21853 compound promoter,activity
R15686 T21853 T21849 dobj activity,increase
R15687 T21854 T21853 prep over,activity
R15689 T21855 T21854 pobj that,over
R15690 T21856 T21855 prep of,that
R15692 T21857 T21860 amod wild-type,β
R15693 T21858 T21860 compound C/EBP,β
R15694 T21859 T21860 punct -,β
R15695 T21860 T21856 pobj β,of
R15696 T21861 T21849 punct ",",increase
R15697 T21862 T21874 advmod even,observed
R15698 T21863 T21874 mark though,observed
R15700 T21864 T21868 nsubj recruitment,βT217
R15701 T21865 T21864 prep of,recruitment
R15703 T21866 T21865 pobj C/EBP,of
R15704 T21867 T21868 punct -,βT217
R15705 T21868 T21874 nsubjpass βT217,observed
R15707 T21869 T21868 prep to,βT217
R15708 T21870 T21872 det the,promoter
R15710 T21871 T21872 compound SerpinB2,promoter
R15711 T21872 T21869 pobj promoter,to
R15712 T21873 T21874 auxpass was,observed
R15714 T21874 T21849 advcl observed,increase
R15715 T21875 T21876 aux to,decrease
R15717 T21876 T21874 xcomp decrease,observed
R15718 T21877 T21874 prep following,observed
R15720 T21878 T21879 compound LPS,stimulation
R15721 T21879 T21877 pobj stimulation,following
R15722 T21880 T21879 prep of,stimulation
R15723 T21881 T21883 nmod RAW264,cells
R15725 T21882 T21883 nummod .7,cells
R15726 T21883 T21880 pobj cells,of
R15727 T21884 T21844 punct .,/

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19612 305-310 NN denotes cells
T19611 296-304 NN denotes RAW264.7
T19610 293-295 IN denotes of
T19609 281-292 NN denotes stimulation
T19608 277-280 NN denotes LPS
T19607 267-276 VB denotes following
T19606 258-266 VB denotes decrease
T19605 255-257 TO denotes to
T19604 246-254 VB denotes observed
T19603 242-245 VB denotes was
T19602 233-241 NN denotes promoter
T19601 224-232 NN denotes SerpinB2
T19600 220-223 DT denotes the
T19599 217-219 TO denotes to
T19598 205-216 NN denotes C/EBP-βT217
T19597 202-204 IN denotes of
T19596 190-201 NN denotes recruitment
T19595 183-189 IN denotes though
T19594 178-182 RB denotes even
T19593 176-177 -COMMA- denotes ,
T19592 169-176 NN denotes C/EBP-β
T19591 159-168 JJ denotes wild-type
T19590 156-158 IN denotes of
T19589 151-155 DT denotes that
T19588 146-150 IN denotes over
T19587 137-145 NN denotes activity
T19586 128-136 NN denotes promoter
T19585 119-127 JJ denotes proximal
T19584 110-118 NN denotes SerpinB2
T19583 101-109 VB denotes increase
T19582 97-100 RB denotes not
T19581 93-96 VB denotes did
T19580 88-92 NN denotes MEFs
T19579 79-87 NNP denotes Cebpb−/−
T19578 76-78 IN denotes in
T19577 74-75 -COMMA- denotes ,
T19576 63-74 NN denotes C/EBPβT217A
T19575 61-62 -COMMA- denotes ,
T19574 55-61 JJ denotes mutant
T19573 50-54 NN denotes site
T19572 33-49 NN denotes phospho-acceptor
T19571 25-32 JJ denotes C/EBP-β
T19570 23-24 DT denotes a
T19569 20-22 IN denotes of
T19568 9-19 NN denotes expression
T19567 7-8 -COMMA- denotes ,
T19566 0-7 RB denotes However
R14056 T19568 T19569 arg1Of expression,of
R14057 T19568 T19581 arg1Of expression,did
R14058 T19568 T19583 arg1Of expression,increase
R14059 T19573 T19569 arg2Of site,of
R14060 T19573 T19570 arg1Of site,a
R14061 T19573 T19571 arg1Of site,C/EBP-β
R14062 T19573 T19572 arg1Of site,phospho-acceptor
R14063 T19573 T19574 arg1Of site,mutant
R14064 T19573 T19575 arg1Of site,","
R14065 T19576 T19575 arg2Of C/EBPβT217A,","
R14066 T19580 T19578 arg2Of MEFs,in
R14067 T19580 T19579 arg1Of MEFs,Cebpb−/−
R14068 T19583 T19566 arg1Of increase,However
R14069 T19583 T19567 arg1Of increase,","
R14070 T19583 T19577 arg1Of increase,","
R14071 T19583 T19578 arg1Of increase,in
R14072 T19583 T19581 arg2Of increase,did
R14073 T19583 T19582 arg1Of increase,not
R14074 T19583 T19588 arg1Of increase,over
R14075 T19583 T19593 arg1Of increase,","
R14076 T19583 T19595 arg1Of increase,though
R14077 T19587 T19583 arg2Of activity,increase
R14078 T19587 T19584 arg1Of activity,SerpinB2
R14079 T19587 T19585 arg1Of activity,proximal
R14080 T19587 T19586 arg1Of activity,promoter
R14081 T19589 T19588 arg2Of that,over
R14082 T19589 T19590 arg1Of that,of
R14083 T19592 T19590 arg2Of C/EBP-β,of
R14084 T19592 T19591 arg1Of C/EBP-β,wild-type
R14085 T19595 T19594 arg1Of though,even
R14086 T19596 T19597 arg1Of recruitment,of
R14087 T19596 T19599 arg1Of recruitment,to
R14088 T19596 T19603 arg1Of recruitment,was
R14089 T19596 T19604 arg2Of recruitment,observed
R14090 T19596 T19606 arg1Of recruitment,decrease
R14091 T19598 T19597 arg2Of C/EBP-βT217,of
R14092 T19602 T19599 arg2Of promoter,to
R14093 T19602 T19600 arg1Of promoter,the
R14094 T19602 T19601 arg1Of promoter,SerpinB2
R14095 T19604 T19595 arg2Of observed,though
R14096 T19604 T19603 arg2Of observed,was
R14097 T19606 T19604 arg3Of decrease,observed
R14098 T19606 T19605 arg1Of decrease,to
R14099 T19609 T19606 arg2Of stimulation,decrease
R14100 T19609 T19607 arg1Of stimulation,following
R14101 T19609 T19608 arg1Of stimulation,LPS
R14102 T19609 T19610 arg1Of stimulation,of
R14103 T19612 T19610 arg2Of cells,of
R14104 T19612 T19611 arg1Of cells,RAW264.7

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18760 79-84 Protein denotes Cebpb
T18759 63-74 Protein denotes C/EBPβT217A
T18758 25-61 Protein denotes C/EBP-β phospho-acceptor site mutant
T18763 224-232 Protein denotes SerpinB2
T18762 169-176 Protein denotes C/EBP-β
T18761 110-118 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20268 79-84 http://www.uniprot.org/uniprot/P28033 denotes Cebpb
T20262 169-176 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T20261 25-32 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T20230 224-232 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T20229 110-118 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

sentences

Id Subject Object Predicate Lexical cue
T18501 0-311 Sentence denotes However, expression of a C/EBP-β phospho-acceptor site mutant, C/EBPβT217A, in Cebpb−/− MEFs did not increase SerpinB2 proximal promoter activity over that of wild-type C/EBP-β, even though recruitment of C/EBP-βT217 to the SerpinB2 promoter was observed to decrease following LPS stimulation of RAW264.7 cells.
T266 0-311 Sentence denotes However, expression of a C/EBP-β phospho-acceptor site mutant, C/EBPβT217A, in Cebpb−/− MEFs did not increase SerpinB2 proximal promoter activity over that of wild-type C/EBP-β, even though recruitment of C/EBP-βT217 to the SerpinB2 promoter was observed to decrease following LPS stimulation of RAW264.7 cells.

simple1

Id Subject Object Predicate Lexical cue
T18900 224-232 Protein denotes SerpinB2
T18899 169-176 Protein denotes C/EBP-β
T18898 110-118 Protein denotes SerpinB2
T18897 79-84 Protein denotes Cebpb
T18896 63-74 Protein denotes C/EBPβT217A
T18895 25-61 Protein denotes C/EBP-β phospho-acceptor site mutant

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20108 224-232 Protein denotes SerpinB2
T20107 169-176 Protein denotes C/EBP-β
T20106 110-118 Protein denotes SerpinB2
T20105 79-84 Protein denotes Cebpb
T20104 63-74 Protein denotes C/EBPβT217A
T20103 25-61 Protein denotes C/EBP-β phospho-acceptor site mutant
T20180 258-266 Negative_regulation denotes decrease
T20179 101-109 Positive_regulation denotes increase
T20178 9-19 Gene_expression denotes expression
T20177 190-201 Binding denotes recruitment
R14544 T20103 T20178 themeOf C/EBP-β phospho-acceptor site mutant,expression
R14545 T20104 T20178 themeOf C/EBPβT217A,expression
R14546 T20105 T20178 themeOf Cebpb,expression
R14547 T20106 T20179 themeOf SerpinB2,increase
R14548 T20107 T20179 causeOf C/EBP-β,increase
R14549 T20107 T20179 causeOf C/EBP-β,increase
R14550 T20107 T20179 causeOf C/EBP-β,increase
R14551 T20107 T20179 causeOf C/EBP-β,increase
R14552 T20108 T20177 themeOf SerpinB2,recruitment
R14599 T20177 T20180 themeOf recruitment,decrease
R14600 T20178 T20179 themeOf expression,increase
R14601 T20178 T20179 themeOf expression,increase
R14602 T20178 T20179 themeOf expression,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20620 101-109 Positive_regulation denotes increase
T20619 258-266 Negative_regulation denotes decrease
T20618 9-19 Gene_expression denotes expression
T20558 224-232 Protein denotes SerpinB2
T20557 169-176 Protein denotes C/EBP-β
T20556 110-118 Protein denotes SerpinB2
T20555 79-84 Protein denotes Cebpb
T20554 63-74 Protein denotes C/EBPβT217A
T20553 25-61 Protein denotes C/EBP-β phospho-acceptor site mutant
T20621 190-201 Binding denotes recruitment
R14760 T20553 T20618 themeOf C/EBP-β phospho-acceptor site mutant,expression
R14761 T20554 T20618 themeOf C/EBPβT217A,expression
R14762 T20555 T20618 themeOf Cebpb,expression
R14763 T20556 T20620 themeOf SerpinB2,increase
R14764 T20556 T20619 themeOf SerpinB2,decrease
R14765 T20558 T20621 themeOf SerpinB2,recruitment
R14789 T20618 T20620 themeOf expression,increase
R14790 T20618 T20620 themeOf expression,increase
R14791 T20618 T20620 themeOf expression,increase
R14792 T20621 T20619 themeOf recruitment,decrease

DLUT931

Id Subject Object Predicate Lexical cue
T20400 258-266 Negative_regulation denotes decrease
T20399 190-201 Binding denotes recruitment
T20398 101-109 Positive_regulation denotes increase
T20397 9-19 Gene_expression denotes expression
T20332 224-232 Protein denotes SerpinB2
T20331 169-176 Protein denotes C/EBP-β
T20330 110-118 Protein denotes SerpinB2
T20329 79-84 Protein denotes Cebpb
T20328 63-74 Protein denotes C/EBPβT217A
T20327 25-61 Protein denotes C/EBP-β phospho-acceptor site mutant
R14645 T20327 T20397 themeOf C/EBP-β phospho-acceptor site mutant,expression
R14646 T20328 T20397 themeOf C/EBPβT217A,expression
R14647 T20332 T20399 themeOf SerpinB2,recruitment
R14687 T20397 T20398 themeOf expression,increase
R14688 T20397 T20398 themeOf expression,increase
R14689 T20399 T20400 themeOf recruitment,decrease

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21071 224-232 Protein denotes SerpinB2
T21030 41-49 Entity denotes acceptor
T21028 277-280 Entity denotes LPS
T21022 20-61 Entity denotes of a C/EBP-β phospho-acceptor site mutant
T21014 159-177 Protein denotes wild-type C/EBP-β,
T21010 110-118 Protein denotes SerpinB2
T20973 20-61 Entity denotes of a C/EBP-β phospho-acceptor site mutant
T20964 88-92 Protein denotes MEFs
T20943 63-85 Protein denotes C/EBPβT217A, in Cebpb−
T20920 220-241 Entity denotes the SerpinB2 promoter
T20919 79-85 Protein denotes Cebpb−
T20918 128-136 Entity denotes promoter

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20726 258-266 Negative_regulation denotes decrease
T20725 190-201 Binding denotes recruitment
T20724 9-19 Gene_expression denotes expression
T20723 9-19 Gene_expression denotes expression
T20722 9-19 Gene_expression denotes expression
T20721 224-241 Protein denotes SerpinB2 promoter
T20720 205-216 Protein denotes C/EBP-βT217
T20719 110-136 Protein denotes SerpinB2 proximal promoter
T20718 79-92 Protein denotes Cebpb−/− MEFs
T20717 63-74 Protein denotes C/EBPβT217A
T20716 25-61 Protein denotes C/EBP-β phospho-acceptor site mutant
R14839 T20716 T20722 themeOf C/EBP-β phospho-acceptor site mutant,expression
R14840 T20717 T20723 themeOf C/EBPβT217A,expression
R14841 T20718 T20724 themeOf Cebpb−/− MEFs,expression
R14842 T20720 T20725 themeOf C/EBP-βT217,recruitment
R14843 T20721 T20725 themeOf SerpinB2 promoter,recruitment
R14844 T20725 T20726 themeOf recruitment,decrease

testone

Id Subject Object Predicate Lexical cue
T18269 258-266 Negative_regulation denotes decrease
T18268 233-241 Entity denotes promoter
T18267 190-201 Binding denotes recruitment
T18266 9-19 Gene_expression denotes expression
T18211 224-232 Protein denotes SerpinB2
T18210 169-176 Protein denotes C/EBP-β
T18209 110-118 Protein denotes SerpinB2
T18208 79-84 Protein denotes Cebpb
T18207 63-74 Protein denotes C/EBPβT217A
T18206 25-61 Protein denotes C/EBP-β phospho-acceptor site mutant
R13134 T18206 T18266 themeOf C/EBP-β phospho-acceptor site mutant,expression
R13135 T18207 T18266 themeOf C/EBPβT217A,expression
R13153 T18267 T18269 themeOf recruitment,decrease
R13154 T18268 T18267 themeOf promoter,recruitment
R13155 T18268 T18211 partOf promoter,SerpinB2

test3

Id Subject Object Predicate Lexical cue
T18433 258-266 Negative_regulation denotes decrease
T18432 233-241 Entity denotes promoter
T18431 224-232 Protein denotes SerpinB2
T18430 190-201 Binding denotes recruitment
T18429 169-176 Protein denotes C/EBP-β
T18428 110-118 Protein denotes SerpinB2
T18427 101-109 Positive_regulation denotes increase
T18426 79-84 Protein denotes Cebpb
T18425 63-74 Protein denotes C/EBPβT217A
T18424 25-61 Protein denotes C/EBP-β phospho-acceptor site mutant
T18423 9-19 Gene_expression denotes expression
T18328 224-232 Protein denotes SerpinB2
T18327 169-176 Protein denotes C/EBP-β
T18326 110-118 Protein denotes SerpinB2
T18325 79-84 Protein denotes Cebpb
T18324 63-74 Protein denotes C/EBPβT217A
T18323 25-61 Protein denotes C/EBP-β phospho-acceptor site mutant
R13198 T18424 T18423 themeOf C/EBP-β phospho-acceptor site mutant,expression
R13199 T18425 T18423 themeOf C/EBPβT217A,expression
R13200 T18430 T18433 themeOf recruitment,decrease
R13201 T18432 T18431 partOf promoter,SerpinB2
R13202 T18432 T18430 themeOf promoter,recruitment