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PMC:3589482 / 43923-44110 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21730 172-174 CD denotes 14
T21729 171-172 NNP denotes [
T21728 165-170 NN denotes death
T21727 160-164 NN denotes cell
T21726 146-159 JJ denotes viral-induced
T21725 142-145 CC denotes and
T21724 132-141 JJ denotes bacterial
T21723 127-131 IN denotes from
T21722 119-126 VB denotes protect
T21721 116-118 TO denotes to
T21720 103-115 VBN denotes demonstrated
T21719 98-102 VBN denotes been
T21718 94-97 VBZ denotes has
T21717 85-93 NNP denotes SerpinB2
T21716 81-84 CC denotes and
T21715 79-80 NNP denotes ]
T21714 77-79 CD denotes 70
T21713 76-77 NNP denotes [
T21712 74-75 : denotes ;
T21711 73-74 NNP denotes ]
T21710 71-73 CD denotes 69
T21709 70-71 NNP denotes [
T21708 60-69 NN denotes infection
T21707 50-59 JJ denotes bacterial
T21706 47-49 TO denotes to
T21705 35-46 JJ denotes susceptible
T21704 31-34 VBP denotes are
T21703 26-30 NNS denotes mice
T21702 19-25 JJ denotes β-null
T21701 18-19 : denotes -
T21700 13-18 NNP denotes C/EBP
T21699 11-12 , denotes ,
T21698 0-11 RB denotes Furthermore
T21739 186-187 . denotes .
T21738 185-186 NNP denotes ]
T21737 183-185 CD denotes 25
T21736 182-183 NNP denotes [
T21735 180-181 : denotes ;
T21734 179-180 NNP denotes ]
T21733 177-179 CD denotes 16
T21732 176-177 NNP denotes [
T21731 174-175 NNP denotes ]
R15596 T21698 T21704 advmod Furthermore,are
R15601 T21699 T21704 punct ",",are
R15604 T21700 T21703 nmod C/EBP,mice
R15607 T21701 T21702 punct -,β-null
R15608 T21702 T21703 amod β-null,mice
R15611 T21703 T21704 nsubj mice,are
R15614 T21704 T21704 ROOT are,are
R15618 T21705 T21704 acomp susceptible,are
R15622 T21706 T21705 prep to,susceptible
R15626 T21707 T21708 amod bacterial,infection
R15630 T21708 T21706 pobj infection,to
R15633 T21709 T21711 nmod [,]
R15637 T21710 T21711 nummod 69,]
R15641 T21711 T21706 dep ],to
R15646 T21712 T21711 punct ;,]
R15647 T21713 T21715 nmod [,]
R15650 T21714 T21715 nummod 70,]
R15653 T21715 T21711 conj ],]
R15656 T21716 T21715 cc and,]
R15660 T21717 T21715 conj SerpinB2,]
R15663 T21718 T21720 aux has,demonstrated
R15666 T21719 T21720 auxpass been,demonstrated
R15670 T21720 T21704 conj demonstrated,are
R15673 T21721 T21722 aux to,protect
R15677 T21722 T21720 xcomp protect,demonstrated
R15680 T21723 T21722 prep from,protect
R15682 T21724 T21728 amod bacterial,death
R15683 T21725 T21724 cc and,bacterial
R15684 T21726 T21724 conj viral-induced,bacterial
R15688 T21727 T21728 compound cell,death
R15691 T21728 T21731 compound death,]
R15699 T21729 T21731 nmod [,]
R15702 T21730 T21731 nummod 14,]
R15706 T21731 T21723 pobj ],from
R15709 T21732 T21734 nmod [,]
R15713 T21733 T21734 nummod 16,]
R15716 T21734 T21731 appos ],]
R15719 T21735 T21731 punct ;,]
R15724 T21736 T21738 nmod [,]
R15728 T21737 T21738 nummod 25,]
R15733 T21738 T21731 appos ],]
R15736 T21739 T21704 punct .,are

2_test

Id Subject Object Predicate Lexical cue
23472114-7530603-87899191 71-73 7530603 denotes 69
T13678 71-73 7530603 denotes 69

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19488 185-186 -RRB- denotes ]
T19487 183-185 CD denotes 25
T19486 182-183 -LRB- denotes [
T19485 180-181 -COLON- denotes ;
T19484 179-180 -RRB- denotes ]
T19483 177-179 CD denotes 16
T19482 176-177 -LRB- denotes [
T19481 175-176 CD denotes –
T19480 174-175 -RRB- denotes ]
T19479 172-174 CD denotes 14
T19478 171-172 -LRB- denotes [
T19477 165-170 NN denotes death
T19476 160-164 NN denotes cell
T19475 146-159 JJ denotes viral-induced
T19474 142-145 CC denotes and
T19473 132-141 JJ denotes bacterial
T19472 127-131 IN denotes from
T19471 119-126 VB denotes protect
T19470 116-118 TO denotes to
T19469 103-115 VB denotes demonstrated
T19468 98-102 VB denotes been
T19467 94-97 VB denotes has
T19466 85-93 NN denotes SerpinB2
T19465 81-84 CC denotes and
T19464 79-80 -RRB- denotes ]
T19463 77-79 CD denotes 70
T19462 76-77 -LRB- denotes [
T19461 74-75 -COLON- denotes ;
T19460 73-74 -RRB- denotes ]
T19459 71-73 CD denotes 69
T19458 70-71 -LRB- denotes [
T19457 60-69 NN denotes infection
T19456 50-59 JJ denotes bacterial
T19455 47-49 TO denotes to
T19454 35-46 JJ denotes susceptible
T19453 31-34 VB denotes are
T19452 26-30 NN denotes mice
T19451 13-25 JJ denotes C/EBP-β-null
T19450 11-12 -COMMA- denotes ,
T19449 0-11 RB denotes Furthermore
R13929 T19452 T19451 arg1Of mice,C/EBP-β-null
R13930 T19452 T19453 arg1Of mice,are
R13931 T19452 T19454 arg1Of mice,susceptible
R13932 T19453 T19449 arg1Of are,Furthermore
R13933 T19453 T19450 arg1Of are,","
R13934 T19453 T19461 arg1Of are,;
R13935 T19453 T19462 arg1Of are,[
R13936 T19453 T19465 arg1Of are,and
R13937 T19454 T19453 arg2Of susceptible,are
R13938 T19454 T19455 arg1Of susceptible,to
R13939 T19457 T19455 arg2Of infection,to
R13940 T19457 T19456 arg1Of infection,bacterial
R13941 T19457 T19458 arg1Of infection,[
R13942 T19459 T19458 arg2Of 69,[
R13943 T19460 T19458 arg3Of ],[
R13944 T19463 T19462 arg2Of 70,[
R13945 T19464 T19462 arg3Of ],[
R13946 T19466 T19467 arg1Of SerpinB2,has
R13947 T19466 T19468 arg1Of SerpinB2,been
R13948 T19466 T19469 arg2Of SerpinB2,demonstrated
R13949 T19466 T19471 arg1Of SerpinB2,protect
R13950 T19469 T19465 arg2Of demonstrated,and
R13951 T19469 T19467 arg2Of demonstrated,has
R13952 T19469 T19468 arg2Of demonstrated,been
R13953 T19471 T19469 arg3Of protect,demonstrated
R13954 T19471 T19470 arg1Of protect,to
R13955 T19471 T19472 arg1Of protect,from
R13956 T19471 T19478 arg1Of protect,[
R13957 T19471 T19482 arg1Of protect,[
R13958 T19471 T19485 arg1Of protect,;
R13959 T19471 T19486 arg1Of protect,[
R13960 T19473 T19474 arg1Of bacterial,and
R13961 T19475 T19474 arg2Of viral-induced,and
R13962 T19477 T19472 arg2Of death,from
R13963 T19477 T19473 arg1Of death,bacterial
R13964 T19477 T19475 arg1Of death,viral-induced
R13965 T19477 T19476 arg1Of death,cell
R13966 T19479 T19478 arg2Of 14,[
R13967 T19480 T19478 arg3Of ],[
R13968 T19481 T19471 arg2Of –,protect
R13969 T19483 T19482 arg2Of 16,[
R13970 T19484 T19482 arg3Of ],[
R13971 T19487 T19486 arg2Of 25,[
R13972 T19488 T19486 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18751 13-20 Protein denotes C/EBP-β
T18752 85-93 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20257 13-20 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T20226 85-93 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T18826 165-170 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T18825 160-170 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death

GO-CC

Id Subject Object Predicate Lexical cue
T18850 160-164 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T18497 0-187 Sentence denotes Furthermore, C/EBP-β-null mice are susceptible to bacterial infection [69]; [70] and SerpinB2 has been demonstrated to protect from bacterial and viral-induced cell death [14]–[16]; [25].
T262 0-187 Sentence denotes Furthermore, C/EBP-β-null mice are susceptible to bacterial infection [69]; [70] and SerpinB2 has been demonstrated to protect from bacterial and viral-induced cell death [14]–[16]; [25].

ICD10

Id Subject Object Predicate Lexical cue
T18844 50-69 http://purl.bioontology.org/ontology/ICD10/A49.9 denotes bacterial infection

simple1

Id Subject Object Predicate Lexical cue
T18889 85-93 Protein denotes SerpinB2
T18888 13-20 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20097 85-93 Protein denotes SerpinB2
T20096 13-20 Protein denotes C/EBP-β

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20547 85-93 Protein denotes SerpinB2
T20546 13-20 Protein denotes C/EBP-β
T20612 21-25 Negative_regulation denotes null
R14753 T20546 T20612 themeOf C/EBP-β,null

DLUT931

Id Subject Object Predicate Lexical cue
T20392 21-25 Negative_regulation denotes null
T20321 85-93 Protein denotes SerpinB2
T20320 13-20 Protein denotes C/EBP-β
R14640 T20320 T20392 themeOf C/EBP-β,null

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20963 85-175 Protein denotes SerpinB2 has been demonstrated to protect from bacterial and viral-induced cell death [14]
T20959 13-30 Protein denotes C/EBP-β-null mice

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20708 13-20 Protein denotes C/EBP-β

testone

Id Subject Object Predicate Lexical cue
T18261 21-25 Negative_regulation denotes null
T18200 85-93 Protein denotes SerpinB2
T18199 13-20 Protein denotes C/EBP-β
R13129 T18199 T18261 themeOf C/EBP-β,null

test3

Id Subject Object Predicate Lexical cue
T18413 85-93 Protein denotes SerpinB2
T18412 21-25 Negative_regulation denotes null
T18411 13-20 Protein denotes C/EBP-β
T18317 85-93 Protein denotes SerpinB2
T18316 13-20 Protein denotes C/EBP-β
R13192 T18411 T18412 themeOf C/EBP-β,null