PMC:3589482 / 43023-43245
Annnotations
bionlp-st-ge-2016-spacy-parsed
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pmc-enju-pas
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bionlp-st-ge-2016-coref
{"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T18712","span":{"begin":80,"end":84},"obj":"Antecedent"},{"id":"T18711","span":{"begin":85,"end":90},"obj":"Anaphor"}],"relations":[{"id":"R13382","pred":"boundBy","subj":"T18711","obj":"T18712"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"In a previous microarray expression profiling study, SerpinB2 was identified as gene whose induction in C/EBP-β-deficient peritoneal macrophages by LPS and IFNγ was severely impaired compared to wild-type macrophages [68]."}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T18741","span":{"begin":156,"end":160},"obj":"Protein"},{"id":"T18740","span":{"begin":104,"end":111},"obj":"Protein"},{"id":"T18739","span":{"begin":80,"end":84},"obj":"Protein"},{"id":"T18738","span":{"begin":53,"end":61},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"In a previous microarray expression profiling study, SerpinB2 was identified as gene whose induction in C/EBP-β-deficient peritoneal macrophages by LPS and IFNγ was severely impaired compared to wild-type macrophages [68]."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T20251","span":{"begin":104,"end":111},"obj":"http://www.uniprot.org/uniprot/P28033"},{"id":"T20220","span":{"begin":53,"end":61},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"In a previous microarray expression profiling study, SerpinB2 was identified as gene whose induction in C/EBP-β-deficient peritoneal macrophages by LPS and IFNγ was severely impaired compared to wild-type macrophages [68]."}
sentences
{"project":"sentences","denotations":[{"id":"T18493","span":{"begin":0,"end":222},"obj":"Sentence"},{"id":"T258","span":{"begin":0,"end":222},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"In a previous microarray expression profiling study, SerpinB2 was identified as gene whose induction in C/EBP-β-deficient peritoneal macrophages by LPS and IFNγ was severely impaired compared to wild-type macrophages [68]."}
simple1
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BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T20086","span":{"begin":156,"end":160},"obj":"Protein"},{"id":"T20085","span":{"begin":104,"end":111},"obj":"Protein"},{"id":"T20084","span":{"begin":80,"end":84},"obj":"Protein"},{"id":"T20083","span":{"begin":53,"end":61},"obj":"Protein"},{"id":"T20163","span":{"begin":174,"end":182},"obj":"Negative_regulation"},{"id":"T20162","span":{"begin":112,"end":121},"obj":"Negative_regulation"},{"id":"T20161","span":{"begin":91,"end":100},"obj":"Positive_regulation"}],"relations":[{"id":"R14526","pred":"themeOf","subj":"T20083","obj":"T20161"},{"id":"R14527","pred":"themeOf","subj":"T20084","obj":"T20161"},{"id":"R14528","pred":"themeOf","subj":"T20085","obj":"T20161"},{"id":"R14529","pred":"themeOf","subj":"T20085","obj":"T20162"},{"id":"R14530","pred":"themeOf","subj":"T20086","obj":"T20161"},{"id":"R14587","pred":"themeOf","subj":"T20161","obj":"T20162"},{"id":"R14588","pred":"themeOf","subj":"T20161","obj":"T20162"},{"id":"R14590","pred":"themeOf","subj":"T20161","obj":"T20163"},{"id":"R14591","pred":"themeOf","subj":"T20161","obj":"T20163"},{"id":"R14592","pred":"themeOf","subj":"T20161","obj":"T20163"},{"id":"R14593","pred":"themeOf","subj":"T20161","obj":"T20163"},{"id":"R14586","pred":"themeOf","subj":"T20161","obj":"T20162"},{"id":"R14589","pred":"themeOf","subj":"T20161","obj":"T20162"}],"text":"In a previous microarray expression profiling study, SerpinB2 was identified as gene whose induction in C/EBP-β-deficient peritoneal macrophages by LPS and IFNγ was severely impaired compared to wild-type macrophages [68]."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T20536","span":{"begin":156,"end":160},"obj":"Protein"},{"id":"T20535","span":{"begin":104,"end":111},"obj":"Protein"},{"id":"T20534","span":{"begin":80,"end":84},"obj":"Protein"},{"id":"T20533","span":{"begin":53,"end":61},"obj":"Protein"},{"id":"T20603","span":{"begin":112,"end":121},"obj":"Negative_regulation"},{"id":"T20602","span":{"begin":91,"end":100},"obj":"Positive_regulation"},{"id":"T20601","span":{"begin":174,"end":182},"obj":"Negative_regulation"}],"relations":[{"id":"R14742","pred":"themeOf","subj":"T20534","obj":"T20602"},{"id":"R14743","pred":"themeOf","subj":"T20534","obj":"T20601"},{"id":"R14744","pred":"themeOf","subj":"T20535","obj":"T20603"},{"id":"R14745","pred":"themeOf","subj":"T20536","obj":"T20602"}],"text":"In a previous microarray expression profiling study, SerpinB2 was identified as gene whose induction in C/EBP-β-deficient peritoneal macrophages by LPS and IFNγ was severely impaired compared to wild-type macrophages [68]."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T20383","span":{"begin":174,"end":182},"obj":"Negative_regulation"},{"id":"T20382","span":{"begin":112,"end":121},"obj":"Negative_regulation"},{"id":"T20381","span":{"begin":91,"end":100},"obj":"Positive_regulation"},{"id":"T20310","span":{"begin":156,"end":160},"obj":"Protein"},{"id":"T20309","span":{"begin":104,"end":111},"obj":"Protein"},{"id":"T20308","span":{"begin":80,"end":84},"obj":"Protein"},{"id":"T20307","span":{"begin":53,"end":61},"obj":"Protein"}],"relations":[{"id":"R14631","pred":"themeOf","subj":"T20308","obj":"T20381"},{"id":"R14632","pred":"themeOf","subj":"T20309","obj":"T20382"},{"id":"R14633","pred":"themeOf","subj":"T20310","obj":"T20381"},{"id":"R14678","pred":"themeOf","subj":"T20381","obj":"T20383"},{"id":"R14679","pred":"themeOf","subj":"T20381","obj":"T20382"},{"id":"R14680","pred":"themeOf","subj":"T20381","obj":"T20382"},{"id":"R14681","pred":"themeOf","subj":"T20381","obj":"T20383"}],"text":"In a previous microarray expression profiling study, SerpinB2 was identified as gene whose induction in C/EBP-β-deficient peritoneal macrophages by LPS and IFNγ was severely impaired compared to wild-type macrophages [68]."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T21089","span":{"begin":91,"end":182},"obj":"Negative_regulation"},{"id":"T21060","span":{"begin":53,"end":61},"obj":"Protein"},{"id":"T21052","span":{"begin":148,"end":151},"obj":"Entity"},{"id":"T21047","span":{"begin":156,"end":160},"obj":"Protein"},{"id":"T21037","span":{"begin":192,"end":221},"obj":"Entity"},{"id":"T21032","span":{"begin":80,"end":84},"obj":"Protein"},{"id":"T20975","span":{"begin":104,"end":111},"obj":"Protein"},{"id":"T20911","span":{"begin":112,"end":144},"obj":"Entity"}],"text":"In a previous microarray expression profiling study, SerpinB2 was identified as gene whose induction in C/EBP-β-deficient peritoneal macrophages by LPS and IFNγ was severely impaired compared to wild-type macrophages [68]."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T20687","span":{"begin":156,"end":160},"obj":"Protein"},{"id":"T20686","span":{"begin":104,"end":111},"obj":"Protein"}],"text":"In a previous microarray expression profiling study, SerpinB2 was identified as gene whose induction in C/EBP-β-deficient peritoneal macrophages by LPS and IFNγ was severely impaired compared to wild-type macrophages [68]."}
testone
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test3
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