PMC:3589482 / 36632-36874
Annnotations
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16214 | 74-83 | VBN | denotes | increased |
| T16213 | 60-73 | RB | denotes | significantly |
| T16212 | 56-59 | VBD | denotes | was |
| T16211 | 47-55 | NN | denotes | activity |
| T16210 | 38-46 | NN | denotes | promoter |
| T16209 | 29-37 | JJ | denotes | SerpinB2 |
| T16208 | 14-28 | JJ | denotes | LPS-stimulated |
| T16207 | 9-13 | IN | denotes | that |
| T16206 | 3-8 | VBD | denotes | found |
| T16205 | 0-2 | PRP | denotes | We |
| T16248 | 241-242 | . | denotes | . |
| T16247 | 233-241 | NN | denotes | activity |
| T16246 | 224-232 | NN | denotes | promoter |
| T16245 | 215-223 | JJ | denotes | proximal |
| T16244 | 206-214 | JJ | denotes | SerpinB2 |
| T16243 | 194-205 | JJ | denotes | LPS-induced |
| T16242 | 190-193 | IN | denotes | for |
| T16241 | 181-189 | VBN | denotes | required |
| T16240 | 178-180 | VBZ | denotes | is |
| T16239 | 176-177 | NN | denotes | β |
| T16238 | 175-176 | : | denotes | - |
| T16237 | 170-175 | NNP | denotes | C/EBP |
| T16236 | 159-169 | JJ | denotes | endogenous |
| T16235 | 154-158 | IN | denotes | that |
| T16234 | 143-153 | VBG | denotes | indicating |
| T16233 | 141-142 | , | denotes | , |
| T16232 | 140-141 | -RRB- | denotes | ) |
| T16231 | 138-140 | NNP | denotes | 8A |
| T16230 | 133-137 | NNP | denotes | Fig. |
| T16229 | 132-133 | -LRB- | denotes | ( |
| T16228 | 127-131 | NNS | denotes | MEFs |
| T16227 | 125-126 | CD | denotes | − |
| T16226 | 124-125 | VBD | denotes | / |
| T16225 | 123-124 | NNP | denotes | − |
| T16224 | 118-123 | NNP | denotes | Cebpb |
| T16223 | 115-117 | IN | denotes | in |
| T16222 | 105-114 | VBD | denotes | abrogated |
| T16221 | 101-104 | CC | denotes | and |
| T16220 | 96-100 | NNS | denotes | MEFs |
| T16219 | 94-95 | CD | denotes | + |
| T16218 | 93-94 | VBD | denotes | / |
| T16217 | 92-93 | NNP | denotes | + |
| T16216 | 87-92 | NNP | denotes | Cebpb |
| T16215 | 84-86 | IN | denotes | in |
| R11906 | T16205 | T16206 | nsubj | We,found |
| R11907 | T16206 | T16206 | ROOT | found,found |
| R11908 | T16207 | T16214 | mark | that,increased |
| R11909 | T16208 | T16211 | amod | LPS-stimulated,activity |
| R11910 | T16209 | T16211 | amod | SerpinB2,activity |
| R11911 | T16210 | T16211 | compound | promoter,activity |
| R11912 | T16211 | T16214 | nsubjpass | activity,increased |
| R11913 | T16212 | T16214 | auxpass | was,increased |
| R11914 | T16213 | T16214 | advmod | significantly,increased |
| R11915 | T16214 | T16206 | ccomp | increased,found |
| R11916 | T16215 | T16214 | prep | in,increased |
| R11917 | T16216 | T16217 | compound | Cebpb,+ |
| R11918 | T16217 | T16215 | pobj | +,in |
| R11919 | T16218 | T16214 | advcl | /,increased |
| R11920 | T16219 | T16220 | nummod | +,MEFs |
| R11921 | T16220 | T16218 | dobj | MEFs,/ |
| R11922 | T16221 | T16218 | cc | and,/ |
| R11923 | T16222 | T16218 | conj | abrogated,/ |
| R11924 | T16223 | T16222 | prep | in,abrogated |
| R11925 | T16224 | T16225 | compound | Cebpb,− |
| R11926 | T16225 | T16223 | pobj | −,in |
| R11927 | T16226 | T16218 | conj | /,/ |
| R11928 | T16227 | T16228 | nummod | −,MEFs |
| R11929 | T16228 | T16226 | dobj | MEFs,/ |
| R11930 | T16229 | T16228 | punct | (,MEFs |
| R11931 | T16230 | T16231 | compound | Fig.,8A |
| R11932 | T16231 | T16228 | appos | 8A,MEFs |
| R11933 | T16232 | T16228 | punct | ),MEFs |
| R11934 | T16233 | T16226 | punct | ",",/ |
| R11935 | T16234 | T16226 | advcl | indicating,/ |
| R11936 | T16235 | T16241 | mark | that,required |
| R11937 | T16236 | T16239 | amod | endogenous,β |
| R11938 | T16237 | T16239 | compound | C/EBP,β |
| R11939 | T16238 | T16239 | punct | -,β |
| R11940 | T16239 | T16241 | nsubjpass | β,required |
| R11941 | T16240 | T16241 | auxpass | is,required |
| R11942 | T16241 | T16234 | ccomp | required,indicating |
| R11943 | T16242 | T16241 | prep | for,required |
| R11944 | T16243 | T16247 | amod | LPS-induced,activity |
| R11945 | T16244 | T16247 | amod | SerpinB2,activity |
| R11946 | T16245 | T16247 | amod | proximal,activity |
| R11947 | T16246 | T16247 | compound | promoter,activity |
| R11948 | T16247 | T16242 | pobj | activity,for |
| R11949 | T16248 | T16206 | punct | .,found |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15906 | 233-241 | NN | denotes | activity |
| T15905 | 224-232 | NN | denotes | promoter |
| T15904 | 215-223 | JJ | denotes | proximal |
| T15903 | 206-214 | NN | denotes | SerpinB2 |
| T15902 | 194-205 | JJ | denotes | LPS-induced |
| T15901 | 190-193 | IN | denotes | for |
| T15900 | 181-189 | VB | denotes | required |
| T15899 | 178-180 | VB | denotes | is |
| T15898 | 170-177 | NN | denotes | C/EBP-β |
| T15897 | 159-169 | JJ | denotes | endogenous |
| T15896 | 154-158 | IN | denotes | that |
| T15895 | 143-153 | VB | denotes | indicating |
| T15894 | 141-142 | -COMMA- | denotes | , |
| T15893 | 140-141 | -RRB- | denotes | ) |
| T15892 | 138-140 | NN | denotes | 8A |
| T15891 | 133-137 | NNP | denotes | Fig. |
| T15890 | 132-133 | -LRB- | denotes | ( |
| T15889 | 127-131 | NN | denotes | MEFs |
| T15888 | 118-126 | NN | denotes | Cebpb−/− |
| T15887 | 115-117 | IN | denotes | in |
| T15886 | 105-114 | VB | denotes | abrogated |
| T15885 | 101-104 | CC | denotes | and |
| T15884 | 96-100 | NN | denotes | MEFs |
| T15883 | 87-95 | JJ | denotes | Cebpb+/+ |
| T15882 | 84-86 | IN | denotes | in |
| T15881 | 74-83 | VB | denotes | increased |
| T15880 | 60-73 | RB | denotes | significantly |
| T15879 | 56-59 | VB | denotes | was |
| T15878 | 47-55 | NN | denotes | activity |
| T15877 | 38-46 | NN | denotes | promoter |
| T15876 | 29-37 | NN | denotes | SerpinB2 |
| T15875 | 14-28 | JJ | denotes | LPS-stimulated |
| T15874 | 9-13 | IN | denotes | that |
| T15873 | 3-8 | VB | denotes | found |
| T15872 | 0-2 | PRP | denotes | We |
| R11704 | T15872 | T15873 | arg1Of | We,found |
| R11705 | T15873 | T15894 | arg1Of | found,"," |
| R11706 | T15873 | T15895 | modOf | found,indicating |
| R11707 | T15878 | T15875 | arg1Of | activity,LPS-stimulated |
| R11708 | T15878 | T15876 | arg1Of | activity,SerpinB2 |
| R11709 | T15878 | T15877 | arg1Of | activity,promoter |
| R11710 | T15878 | T15879 | arg1Of | activity,was |
| R11711 | T15878 | T15881 | arg2Of | activity,increased |
| R11712 | T15878 | T15886 | arg1Of | activity,abrogated |
| R11713 | T15881 | T15879 | arg2Of | increased,was |
| R11714 | T15881 | T15880 | arg1Of | increased,significantly |
| R11715 | T15881 | T15882 | arg1Of | increased,in |
| R11716 | T15881 | T15885 | arg1Of | increased,and |
| R11717 | T15884 | T15882 | arg2Of | MEFs,in |
| R11718 | T15884 | T15883 | arg1Of | MEFs,Cebpb+/+ |
| R11719 | T15885 | T15873 | arg2Of | and,found |
| R11720 | T15885 | T15874 | arg1Of | and,that |
| R11721 | T15886 | T15885 | arg2Of | abrogated,and |
| R11722 | T15886 | T15887 | arg1Of | abrogated,in |
| R11723 | T15889 | T15887 | arg2Of | MEFs,in |
| R11724 | T15889 | T15888 | arg1Of | MEFs,Cebpb−/− |
| R11725 | T15892 | T15886 | arg2Of | 8A,abrogated |
| R11726 | T15892 | T15890 | arg2Of | 8A,( |
| R11727 | T15892 | T15891 | arg1Of | 8A,Fig. |
| R11728 | T15893 | T15890 | arg3Of | ),( |
| R11729 | T15898 | T15897 | arg1Of | C/EBP-β,endogenous |
| R11730 | T15898 | T15899 | arg1Of | C/EBP-β,is |
| R11731 | T15898 | T15900 | arg2Of | C/EBP-β,required |
| R11732 | T15900 | T15895 | arg2Of | required,indicating |
| R11733 | T15900 | T15896 | arg1Of | required,that |
| R11734 | T15900 | T15899 | arg2Of | required,is |
| R11735 | T15900 | T15901 | arg1Of | required,for |
| R11736 | T15906 | T15901 | arg2Of | activity,for |
| R11737 | T15906 | T15902 | arg1Of | activity,LPS-induced |
| R11738 | T15906 | T15903 | arg1Of | activity,SerpinB2 |
| R11739 | T15906 | T15904 | arg1Of | activity,proximal |
| R11740 | T15906 | T15905 | arg1Of | activity,promoter |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15768 | 206-214 | Protein | denotes | SerpinB2 |
| T15767 | 170-177 | Protein | denotes | C/EBP-β |
| T15766 | 118-123 | Protein | denotes | Cebpb |
| T15765 | 87-92 | Protein | denotes | Cebpb |
| T15764 | 29-37 | Protein | denotes | SerpinB2 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15961 | 206-214 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T15960 | 29-37 | http://www.uniprot.org/uniprot/P05120 | denotes | SerpinB2 |
| T15954 | 118-123 | http://www.uniprot.org/uniprot/P28033 | denotes | Cebpb |
| T15953 | 87-92 | http://www.uniprot.org/uniprot/P28033 | denotes | Cebpb |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15713 | 0-242 | Sentence | denotes | We found that LPS-stimulated SerpinB2 promoter activity was significantly increased in Cebpb+/+ MEFs and abrogated in Cebpb−/− MEFs (Fig. 8A), indicating that endogenous C/EBP-β is required for LPS-induced SerpinB2 proximal promoter activity. |
| T222 | 0-242 | Sentence | denotes | We found that LPS-stimulated SerpinB2 promoter activity was significantly increased in Cebpb+/+ MEFs and abrogated in Cebpb−/− MEFs (Fig. 8A), indicating that endogenous C/EBP-β is required for LPS-induced SerpinB2 proximal promoter activity. |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15788 | 206-214 | Protein | denotes | SerpinB2 |
| T15787 | 170-177 | Protein | denotes | C/EBP-β |
| T15786 | 118-123 | Protein | denotes | Cebpb |
| T15785 | 87-92 | Protein | denotes | Cebpb |
| T15784 | 29-37 | Protein | denotes | SerpinB2 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15934 | 29-37 | Protein | denotes | SerpinB2 |
| T15946 | 14-28 | Positive_regulation | denotes | LPS-stimulated |
| T15945 | 105-114 | Negative_regulation | denotes | abrogated |
| T15944 | 194-205 | Positive_regulation | denotes | LPS-induced |
| T15943 | 181-189 | Positive_regulation | denotes | required |
| T15942 | 74-83 | Positive_regulation | denotes | increased |
| T15938 | 206-214 | Protein | denotes | SerpinB2 |
| T15937 | 170-177 | Protein | denotes | C/EBP-β |
| T15936 | 118-123 | Protein | denotes | Cebpb |
| T15935 | 87-92 | Protein | denotes | Cebpb |
| R11747 | T15934 | T15942 | themeOf | SerpinB2,increased |
| R11748 | T15934 | T15945 | themeOf | SerpinB2,abrogated |
| R11749 | T15934 | T15946 | themeOf | SerpinB2,LPS-stimulated |
| R11750 | T15935 | T15942 | themeOf | Cebpb,increased |
| R11751 | T15937 | T15943 | causeOf | C/EBP-β,required |
| R11752 | T15937 | T15943 | causeOf | C/EBP-β,required |
| R11753 | T15938 | T15943 | themeOf | SerpinB2,required |
| R11754 | T15938 | T15944 | themeOf | SerpinB2,LPS-induced |
| R11755 | T15944 | T15943 | themeOf | LPS-induced,required |
| R11756 | T15946 | T15942 | themeOf | LPS-stimulated,increased |
| R11757 | T15946 | T15945 | themeOf | LPS-stimulated,abrogated |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16025 | 181-189 | Positive_regulation | denotes | required |
| T16024 | 74-83 | Positive_regulation | denotes | increased |
| T16023 | 105-114 | Negative_regulation | denotes | abrogated |
| T16022 | 194-205 | Positive_regulation | denotes | LPS-induced |
| T16019 | 206-214 | Protein | denotes | SerpinB2 |
| T16018 | 170-177 | Protein | denotes | C/EBP-β |
| T16017 | 118-123 | Protein | denotes | Cebpb |
| T16016 | 87-92 | Protein | denotes | Cebpb |
| T16015 | 29-37 | Protein | denotes | SerpinB2 |
| R11775 | T16016 | T16024 | themeOf | Cebpb,increased |
| R11776 | T16017 | T16023 | themeOf | Cebpb,abrogated |
| R11777 | T16018 | T16025 | causeOf | C/EBP-β,required |
| R11778 | T16019 | T16025 | themeOf | SerpinB2,required |
| R11779 | T16019 | T16022 | themeOf | SerpinB2,LPS-induced |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15985 | 194-205 | Positive_regulation | denotes | LPS-induced |
| T15984 | 105-114 | Negative_regulation | denotes | abrogated |
| T15983 | 74-83 | Positive_regulation | denotes | increased |
| T15978 | 206-214 | Protein | denotes | SerpinB2 |
| T15977 | 170-177 | Protein | denotes | C/EBP-β |
| T15976 | 118-123 | Protein | denotes | Cebpb |
| T15975 | 87-92 | Protein | denotes | Cebpb |
| T15974 | 29-37 | Protein | denotes | SerpinB2 |
| R11763 | T15974 | T15983 | themeOf | SerpinB2,increased |
| R11764 | T15974 | T15984 | themeOf | SerpinB2,abrogated |
| R11765 | T15978 | T15985 | themeOf | SerpinB2,LPS-induced |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16104 | 14-55 | Positive_regulation | denotes | LPS-stimulated SerpinB2 promoter activity |
| T16095 | 224-232 | Entity | denotes | promoter |
| T16090 | 96-100 | Protein | denotes | MEFs |
| T16089 | 133-136 | Protein | denotes | Fig |
| T16087 | 14-28 | Entity | denotes | LPS-stimulated |
| T16086 | 29-37 | Protein | denotes | SerpinB2 |
| T16084 | 154-177 | Protein | denotes | that endogenous C/EBP-β |
| T16083 | 127-131 | Protein | denotes | MEFs |
| T16081 | 194-241 | Protein | denotes | LPS-induced SerpinB2 proximal promoter activity |
| T16079 | 194-205 | Entity | denotes | LPS-induced |
| T16077 | 29-46 | Entity | denotes | SerpinB2 promoter |
| T16076 | 118-124 | Protein | denotes | Cebpb− |
| R11802 | T16077 | T16086 | partOf | SerpinB2 promoter,SerpinB2 |
| R11803 | T16087 | T16104 | causeOf | LPS-stimulated,LPS-stimulated SerpinB2 promoter activity |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16048 | 181-189 | Positive_regulation | denotes | required |
| T16047 | 105-114 | Negative_regulation | denotes | abrogated |
| T16046 | 74-83 | Positive_regulation | denotes | increased |
| T16045 | 206-232 | Protein | denotes | SerpinB2 proximal promoter |
| T16044 | 170-177 | Protein | denotes | C/EBP-β |
| T16043 | 87-100 | Protein | denotes | Cebpb+/+ MEFs |
| T16042 | 29-46 | Protein | denotes | SerpinB2 promoter |
| R11786 | T16042 | T16047 | themeOf | SerpinB2 promoter,abrogated |
| R11787 | T16043 | T16046 | themeOf | Cebpb+/+ MEFs,increased |
| R11788 | T16044 | T16048 | causeOf | C/EBP-β,required |
| R11789 | T16045 | T16048 | themeOf | SerpinB2 proximal promoter,required |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15670 | 105-114 | Negative_regulation | denotes | abrogated |
| T15663 | 206-214 | Protein | denotes | SerpinB2 |
| T15662 | 170-177 | Protein | denotes | C/EBP-β |
| T15661 | 118-123 | Protein | denotes | Cebpb |
| T15660 | 87-92 | Protein | denotes | Cebpb |
| T15659 | 29-37 | Protein | denotes | SerpinB2 |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15686 | 206-214 | Protein | denotes | SerpinB2 |
| T15685 | 170-177 | Protein | denotes | C/EBP-β |
| T15684 | 118-123 | Protein | denotes | Cebpb |
| T15683 | 87-92 | Protein | denotes | Cebpb |
| T15682 | 29-37 | Protein | denotes | SerpinB2 |
| T15709 | 206-214 | Protein | denotes | SerpinB2 |
| T15708 | 198-205 | Positive_regulation | denotes | induced |
| T15707 | 170-177 | Protein | denotes | C/EBP-β |
| T15706 | 118-123 | Protein | denotes | Cebpb |
| T15705 | 87-92 | Protein | denotes | Cebpb |
| T15704 | 29-37 | Protein | denotes | SerpinB2 |
| T15703 | 18-28 | Positive_regulation | denotes | stimulated |