PMC:3589482 / 3627-3828 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T2865","span":{"begin":200,"end":201},"obj":"."},{"id":"T2864","span":{"begin":193,"end":200},"obj":"NN"},{"id":"T2863","span":{"begin":184,"end":192},"obj":"NN"},{"id":"T2862","span":{"begin":174,"end":183},"obj":"VBG"},{"id":"T2861","span":{"begin":172,"end":173},"obj":","},{"id":"T2860","span":{"begin":163,"end":172},"obj":"NNS"},{"id":"T2859","span":{"begin":156,"end":162},"obj":"JJ"},{"id":"T2858","span":{"begin":149,"end":155},"obj":"NN"},{"id":"T2857","span":{"begin":146,"end":148},"obj":"IN"},{"id":"T2856","span":{"begin":135,"end":145},"obj":"NN"},{"id":"T2855","span":{"begin":131,"end":134},"obj":"DT"},{"id":"T2854","span":{"begin":128,"end":130},"obj":"IN"},{"id":"T2853","span":{"begin":123,"end":127},"obj":"NN"},{"id":"T2852","span":{"begin":115,"end":122},"obj":"JJ"},{"id":"T2851","span":{"begin":113,"end":114},"obj":"DT"},{"id":"T2850","span":{"begin":107,"end":112},"obj":"VBZ"},{"id":"T2849","span":{"begin":103,"end":106},"obj":"CC"},{"id":"T2848","span":{"begin":94,"end":102},"obj":"NNS"},{"id":"T2847","span":{"begin":84,"end":93},"obj":"JJ"},{"id":"T2846","span":{"begin":78,"end":83},"obj":"JJ"},{"id":"T2845","span":{"begin":74,"end":77},"obj":"CC"},{"id":"T2844","span":{"begin":70,"end":73},"obj":"NNP"},{"id":"T2843","span":{"begin":67,"end":69},"obj":"IN"},{"id":"T2842","span":{"begin":55,"end":66},"obj":"NN"},{"id":"T2841","span":{"begin":51,"end":54},"obj":"DT"},{"id":"T2840","span":{"begin":47,"end":50},"obj":"IN"},{"id":"T2839","span":{"begin":35,"end":46},"obj":"JJ"},{"id":"T2838","span":{"begin":32,"end":34},"obj":"VBZ"},{"id":"T2837","span":{"begin":30,"end":31},"obj":"-RRB-"},{"id":"T2836","span":{"begin":26,"end":30},"obj":"CD"},{"id":"T2835","span":{"begin":25,"end":26},"obj":"-LRB-"},{"id":"T2834","span":{"begin":23,"end":24},"obj":"CD"},{"id":"T2833","span":{"begin":14,"end":22},"obj":"NN"},{"id":"T2832","span":{"begin":4,"end":13},"obj":"JJ"},{"id":"T2831","span":{"begin":0,"end":3},"obj":"DT"}],"relations":[{"id":"R1924","pred":"det","subj":"T2831","obj":"T2838"},{"id":"R1925","pred":"amod","subj":"T2832","obj":"T2833"},{"id":"R1927","pred":"nsubj","subj":"T2833","obj":"T2838"},{"id":"R1928","pred":"nummod","subj":"T2834","obj":"T2833"},{"id":"R1930","pred":"punct","subj":"T2835","obj":"T2833"},{"id":"R1931","pred":"appos","subj":"T2836","obj":"T2833"},{"id":"R1932","pred":"punct","subj":"T2837","obj":"T2833"},{"id":"R1934","pred":"ROOT","subj":"T2838","obj":"T2838"},{"id":"R1935","pred":"acomp","subj":"T2839","obj":"T2838"},{"id":"R1936","pred":"prep","subj":"T2840","obj":"T2839"},{"id":"R1938","pred":"det","subj":"T2841","obj":"T2842"},{"id":"R1939","pred":"pobj","subj":"T2842","obj":"T2840"},{"id":"R1941","pred":"prep","subj":"T2843","obj":"T2842"},{"id":"R1942","pred":"pobj","subj":"T2844","obj":"T2843"},{"id":"R1943","pred":"cc","subj":"T2845","obj":"T2844"},{"id":"R1945","pred":"amod","subj":"T2846","obj":"T2848"},{"id":"R1946","pred":"amod","subj":"T2847","obj":"T2848"},{"id":"R1947","pred":"conj","subj":"T2848","obj":"T2844"},{"id":"R1949","pred":"cc","subj":"T2849","obj":"T2848"},{"id":"R1950","pred":"conj","subj":"T2850","obj":"T2838"},{"id":"R1952","pred":"det","subj":"T2851","obj":"T2853"},{"id":"R1953","pred":"amod","subj":"T2852","obj":"T2853"},{"id":"R1954","pred":"dobj","subj":"T2853","obj":"T2850"},{"id":"R1956","pred":"prep","subj":"T2854","obj":"T2853"},{"id":"R1957","pred":"det","subj":"T2855","obj":"T2856"},{"id":"R1958","pred":"pobj","subj":"T2856","obj":"T2854"},{"id":"R1959","pred":"prep","subj":"T2857","obj":"T2856"},{"id":"R1960","pred":"amod","subj":"T2858","obj":"T2860"},{"id":"R1961","pred":"amod","subj":"T2859","obj":"T2860"},{"id":"R1963","pred":"pobj","subj":"T2860","obj":"T2857"},{"id":"R1964","pred":"punct","subj":"T2861","obj":"T2860"},{"id":"R1965","pred":"prep","subj":"T2862","obj":"T2860"},{"id":"R1966","pred":"compound","subj":"T2863","obj":"T2864"},{"id":"R1968","pred":"pobj","subj":"T2864","obj":"T2862"},{"id":"R1969","pred":"punct","subj":"T2865","obj":"T2838"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T1792","span":{"begin":193,"end":200},"obj":"NN"},{"id":"T1791","span":{"begin":184,"end":192},"obj":"NN"},{"id":"T1790","span":{"begin":174,"end":183},"obj":"VB"},{"id":"T1789","span":{"begin":172,"end":173},"obj":"-COMMA-"},{"id":"T1788","span":{"begin":163,"end":172},"obj":"NN"},{"id":"T1787","span":{"begin":156,"end":162},"obj":"JJ"},{"id":"T1786","span":{"begin":149,"end":155},"obj":"JJ"},{"id":"T1785","span":{"begin":146,"end":148},"obj":"IN"},{"id":"T1784","span":{"begin":135,"end":145},"obj":"NN"},{"id":"T1783","span":{"begin":131,"end":134},"obj":"DT"},{"id":"T1782","span":{"begin":128,"end":130},"obj":"IN"},{"id":"T1781","span":{"begin":123,"end":127},"obj":"NN"},{"id":"T1780","span":{"begin":115,"end":122},"obj":"JJ"},{"id":"T1779","span":{"begin":113,"end":114},"obj":"DT"},{"id":"T1778","span":{"begin":107,"end":112},"obj":"VB"},{"id":"T1777","span":{"begin":103,"end":106},"obj":"CC"},{"id":"T1776","span":{"begin":94,"end":102},"obj":"NN"},{"id":"T1775","span":{"begin":84,"end":93},"obj":"JJ"},{"id":"T1774","span":{"begin":78,"end":83},"obj":"JJ"},{"id":"T1773","span":{"begin":74,"end":77},"obj":"CC"},{"id":"T1772","span":{"begin":70,"end":73},"obj":"NN"},{"id":"T1771","span":{"begin":67,"end":69},"obj":"IN"},{"id":"T1770","span":{"begin":55,"end":66},"obj":"NN"},{"id":"T1769","span":{"begin":51,"end":54},"obj":"DT"},{"id":"T1768","span":{"begin":47,"end":50},"obj":"IN"},{"id":"T1767","span":{"begin":35,"end":46},"obj":"JJ"},{"id":"T1766","span":{"begin":32,"end":34},"obj":"VB"},{"id":"T1765","span":{"begin":30,"end":31},"obj":"-RRB-"},{"id":"T1764","span":{"begin":26,"end":30},"obj":"NN"},{"id":"T1763","span":{"begin":25,"end":26},"obj":"-LRB-"},{"id":"T1762","span":{"begin":23,"end":24},"obj":"CD"},{"id":"T1761","span":{"begin":14,"end":22},"obj":"NN"},{"id":"T1760","span":{"begin":4,"end":13},"obj":"JJ"},{"id":"T1759","span":{"begin":0,"end":3},"obj":"DT"}],"relations":[{"id":"R1164","pred":"arg1Of","subj":"T1761","obj":"T1759"},{"id":"R1165","pred":"arg1Of","subj":"T1761","obj":"T1760"},{"id":"R1166","pred":"arg1Of","subj":"T1761","obj":"T1762"},{"id":"R1167","pred":"arg1Of","subj":"T1761","obj":"T1763"},{"id":"R1168","pred":"arg1Of","subj":"T1761","obj":"T1766"},{"id":"R1169","pred":"arg1Of","subj":"T1761","obj":"T1767"},{"id":"R1170","pred":"arg1Of","subj":"T1761","obj":"T1778"},{"id":"R1171","pred":"arg2Of","subj":"T1764","obj":"T1763"},{"id":"R1172","pred":"arg3Of","subj":"T1765","obj":"T1763"},{"id":"R1173","pred":"arg1Of","subj":"T1766","obj":"T1777"},{"id":"R1174","pred":"arg2Of","subj":"T1767","obj":"T1766"},{"id":"R1175","pred":"arg1Of","subj":"T1767","obj":"T1768"},{"id":"R1176","pred":"arg2Of","subj":"T1770","obj":"T1768"},{"id":"R1177","pred":"arg1Of","subj":"T1770","obj":"T1769"},{"id":"R1178","pred":"arg1Of","subj":"T1770","obj":"T1771"},{"id":"R1179","pred":"arg1Of","subj":"T1772","obj":"T1773"},{"id":"R1180","pred":"arg2Of","subj":"T1773","obj":"T1771"},{"id":"R1181","pred":"arg2Of","subj":"T1776","obj":"T1773"},{"id":"R1182","pred":"arg1Of","subj":"T1776","obj":"T1774"},{"id":"R1183","pred":"arg1Of","subj":"T1776","obj":"T1775"},{"id":"R1184","pred":"arg2Of","subj":"T1778","obj":"T1777"},{"id":"R1185","pred":"arg1Of","subj":"T1778","obj":"T1782"},{"id":"R1186","pred":"arg2Of","subj":"T1781","obj":"T1778"},{"id":"R1187","pred":"arg1Of","subj":"T1781","obj":"T1779"},{"id":"R1188","pred":"arg1Of","subj":"T1781","obj":"T1780"},{"id":"R1189","pred":"arg2Of","subj":"T1784","obj":"T1782"},{"id":"R1190","pred":"arg1Of","subj":"T1784","obj":"T1783"},{"id":"R1191","pred":"arg1Of","subj":"T1784","obj":"T1785"},{"id":"R1192","pred":"arg2Of","subj":"T1788","obj":"T1785"},{"id":"R1193","pred":"arg1Of","subj":"T1788","obj":"T1786"},{"id":"R1194","pred":"arg1Of","subj":"T1788","obj":"T1787"},{"id":"R1195","pred":"arg1Of","subj":"T1788","obj":"T1789"},{"id":"R1196","pred":"arg1Of","subj":"T1788","obj":"T1790"},{"id":"R1197","pred":"arg2Of","subj":"T1792","obj":"T1790"},{"id":"R1198","pred":"arg1Of","subj":"T1792","obj":"T1791"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T1309","span":{"begin":26,"end":30},"obj":"Protein"},{"id":"T1308","span":{"begin":4,"end":24},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2121","span":{"begin":26,"end":30},"obj":"http://www.uniprot.org/uniprot/O00206"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    UBERON-AE

    {"project":"UBERON-AE","denotations":[{"id":"T1202","span":{"begin":115,"end":122},"obj":"http://purl.obolibrary.org/obo/UBERON_0012131"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T1343","span":{"begin":156,"end":172},"obj":"http://purl.obolibrary.org/obo/GO_0006955"},{"id":"T1339","span":{"begin":149,"end":172},"obj":"http://purl.obolibrary.org/obo/GO_0045824"},{"id":"T1337","span":{"begin":149,"end":172},"obj":"http://purl.obolibrary.org/obo/GO_0045089"},{"id":"T1335","span":{"begin":149,"end":172},"obj":"http://purl.obolibrary.org/obo/GO_0002218"},{"id":"T1333","span":{"begin":149,"end":172},"obj":"http://purl.obolibrary.org/obo/GO_0045088"},{"id":"T1331","span":{"begin":149,"end":172},"obj":"http://purl.obolibrary.org/obo/GO_0002227"},{"id":"T1329","span":{"begin":149,"end":172},"obj":"http://purl.obolibrary.org/obo/GO_0045087"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    sentences

    {"project":"sentences","denotations":[{"id":"T1215","span":{"begin":0,"end":201},"obj":"Sentence"},{"id":"T25","span":{"begin":0,"end":201},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    simple1

    {"project":"simple1","denotations":[{"id":"T1407","span":{"begin":26,"end":30},"obj":"Protein"},{"id":"T1406","span":{"begin":4,"end":24},"obj":"Protein"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T2065","span":{"begin":26,"end":30},"obj":"Protein"},{"id":"T2064","span":{"begin":4,"end":24},"obj":"Protein"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T2224","span":{"begin":26,"end":30},"obj":"Protein"},{"id":"T2223","span":{"begin":4,"end":24},"obj":"Protein"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T2143","span":{"begin":26,"end":30},"obj":"Protein"},{"id":"T2142","span":{"begin":4,"end":24},"obj":"Protein"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T2484","span":{"begin":131,"end":200},"obj":"Regulation"},{"id":"T2442","span":{"begin":26,"end":30},"obj":"Protein"},{"id":"T2408","span":{"begin":184,"end":192},"obj":"Protein"},{"id":"T2398","span":{"begin":70,"end":73},"obj":"Entity"},{"id":"T2388","span":{"begin":0,"end":31},"obj":"Protein"}],"relations":[{"id":"R1615","pred":"themeOf","subj":"T2408","obj":"T2484"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T2278","span":{"begin":184,"end":200},"obj":"Protein"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    testone

    {"project":"testone","denotations":[{"id":"T1104","span":{"begin":26,"end":30},"obj":"Protein"},{"id":"T1103","span":{"begin":4,"end":24},"obj":"Protein"}],"relations":[{"id":"R746","pred":"equivalentTo","subj":"T1104","obj":"T1103"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}

    test3

    {"project":"test3","denotations":[{"id":"T1172","span":{"begin":26,"end":30},"obj":"Protein"},{"id":"T1171","span":{"begin":4,"end":24},"obj":"Protein"},{"id":"T1145","span":{"begin":26,"end":30},"obj":"Protein"},{"id":"T1144","span":{"begin":4,"end":24},"obj":"Protein"}],"relations":[{"id":"R757","pred":"equivalentTo","subj":"T1172","obj":"T1171"}],"text":"The toll-like receptor 4 (TLR4) is responsible for the recognition of LPS and other microbial products and plays a central role in the initiation of innate immune responses, including cytokine release."}