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PMC:3589482 / 34649-34879 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15631 229-230 . denotes .
T15630 226-229 NNP denotes LPS
T15629 223-225 TO denotes to
T15628 214-222 NN denotes response
T15627 211-213 IN denotes in
T15626 202-210 NN denotes promoter
T15625 193-201 NNP denotes SerpinB2
T15624 189-192 DT denotes the
T15623 184-188 IN denotes from
T15622 170-183 NN denotes transcription
T15621 160-169 VBN denotes increased
T15620 156-159 IN denotes for
T15619 144-155 JJ denotes responsible
T15618 141-143 VB denotes be
T15617 137-140 RB denotes not
T15616 133-136 MD denotes may
T15615 131-132 NN denotes β
T15614 130-131 : denotes -
T15613 125-130 NNP denotes C/EBP
T15612 105-124 JJ denotes T217-phosphorylated
T15611 100-104 IN denotes that
T15610 91-99 VBP denotes indicate
T15609 87-90 CC denotes and
T15608 85-86 , denotes ,
T15607 74-85 NN denotes recruitment
T15606 68-73 NNP denotes βT217
T15605 67-68 : denotes -
T15604 60-67 NN denotes p-C/EBP
T15603 56-59 CC denotes and
T15602 54-55 NN denotes β
T15601 53-54 : denotes -
T15600 48-53 NNP denotes C/EBP
T15599 40-47 IN denotes between
T15598 27-39 NN denotes relationship
T15597 19-26 JJ denotes inverse
T15596 16-18 DT denotes an
T15595 11-15 VBP denotes show
T15594 6-10 NNS denotes data
T15593 0-5 DT denotes These
R11541 T15593 T15594 det These,data
R11542 T15594 T15595 nsubj data,show
R11543 T15595 T15595 ROOT show,show
R11544 T15596 T15598 det an,relationship
R11545 T15597 T15598 compound inverse,relationship
R11546 T15598 T15595 dobj relationship,show
R11547 T15599 T15598 prep between,relationship
R11548 T15600 T15599 pobj C/EBP,between
R11549 T15601 T15602 punct -,β
R11550 T15602 T15598 appos β,relationship
R11551 T15603 T15602 cc and,β
R11552 T15604 T15602 conj p-C/EBP,β
R11553 T15605 T15607 punct -,recruitment
R11554 T15606 T15607 compound βT217,recruitment
R11555 T15607 T15598 conj recruitment,relationship
R11556 T15608 T15607 punct ",",recruitment
R11557 T15609 T15607 cc and,recruitment
R11558 T15610 T15595 advcl indicate,show
R11559 T15611 T15618 mark that,be
R11560 T15612 T15615 amod T217-phosphorylated,β
R11561 T15613 T15615 compound C/EBP,β
R11562 T15614 T15615 punct -,β
R11563 T15615 T15618 nsubj β,be
R11564 T15616 T15618 aux may,be
R11565 T15617 T15618 neg not,be
R11566 T15618 T15610 ccomp be,indicate
R11567 T15619 T15618 acomp responsible,be
R11568 T15620 T15619 prep for,responsible
R11569 T15621 T15622 amod increased,transcription
R11570 T15622 T15620 pobj transcription,for
R11571 T15623 T15622 prep from,transcription
R11572 T15624 T15626 det the,promoter
R11573 T15625 T15626 compound SerpinB2,promoter
R11574 T15626 T15623 pobj promoter,from
R11575 T15627 T15618 prep in,be
R11576 T15628 T15627 pobj response,in
R11577 T15629 T15628 prep to,response
R11578 T15630 T15629 pobj LPS,to
R11579 T15631 T15595 punct .,show

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15137 226-229 NN denotes LPS
T15136 223-225 TO denotes to
T15135 214-222 NN denotes response
T15134 211-213 IN denotes in
T15133 202-210 NN denotes promoter
T15132 193-201 NN denotes SerpinB2
T15131 189-192 DT denotes the
T15130 184-188 IN denotes from
T15129 170-183 NN denotes transcription
T15128 160-169 VB denotes increased
T15127 156-159 IN denotes for
T15126 144-155 JJ denotes responsible
T15125 141-143 VB denotes be
T15124 137-140 RB denotes not
T15123 133-136 MD denotes may
T15122 125-132 NN denotes C/EBP-β
T15121 105-124 JJ denotes T217-phosphorylated
T15120 100-104 IN denotes that
T15119 91-99 VB denotes indicate
T15118 87-90 CC denotes and
T15117 85-86 -COMMA- denotes ,
T15116 74-85 NN denotes recruitment
T15115 60-73 NN denotes p-C/EBP-βT217
T15114 56-59 CC denotes and
T15113 48-55 NN denotes C/EBP-β
T15112 40-47 IN denotes between
T15111 27-39 NN denotes relationship
T15110 19-26 JJ denotes inverse
T15109 16-18 DT denotes an
T15108 11-15 VB denotes show
T15107 6-10 NN denotes data
T15106 0-5 DT denotes These
R11143 T15107 T15106 arg1Of data,These
R11144 T15107 T15108 arg1Of data,show
R11145 T15107 T15119 arg1Of data,indicate
R11146 T15108 T15118 arg1Of show,and
R11147 T15111 T15108 arg2Of relationship,show
R11148 T15111 T15109 arg1Of relationship,an
R11149 T15111 T15110 arg1Of relationship,inverse
R11150 T15111 T15112 arg1Of relationship,between
R11151 T15113 T15114 arg1Of C/EBP-β,and
R11152 T15114 T15112 arg2Of and,between
R11153 T15116 T15114 arg2Of recruitment,and
R11154 T15116 T15115 arg1Of recruitment,p-C/EBP-βT217
R11155 T15118 T15117 arg1Of and,","
R11156 T15119 T15118 arg2Of indicate,and
R11157 T15122 T15121 arg1Of C/EBP-β,T217-phosphorylated
R11158 T15122 T15123 arg1Of C/EBP-β,may
R11159 T15122 T15125 arg1Of C/EBP-β,be
R11160 T15122 T15126 arg1Of C/EBP-β,responsible
R11161 T15125 T15119 arg2Of be,indicate
R11162 T15125 T15120 arg1Of be,that
R11163 T15125 T15123 arg2Of be,may
R11164 T15125 T15124 arg1Of be,not
R11165 T15126 T15125 arg2Of responsible,be
R11166 T15126 T15127 arg1Of responsible,for
R11167 T15129 T15127 arg2Of transcription,for
R11168 T15129 T15128 arg2Of transcription,increased
R11169 T15129 T15130 arg1Of transcription,from
R11170 T15129 T15134 arg1Of transcription,in
R11171 T15133 T15130 arg2Of promoter,from
R11172 T15133 T15131 arg1Of promoter,the
R11173 T15133 T15132 arg1Of promoter,SerpinB2
R11174 T15134 T15136 arg1Of in,to
R11175 T15135 T15134 arg2Of response,in
R11176 T15137 T15134 arg3Of LPS,in

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15192 193-201 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15184 125-132 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T15183 48-55 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-BP

Id Subject Object Predicate Lexical cue
T14854 170-183 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T14851 214-229 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS

sentences

Id Subject Object Predicate Lexical cue
T14846 0-230 Sentence denotes These data show an inverse relationship between C/EBP-β and p-C/EBP-βT217 recruitment, and indicate that T217-phosphorylated C/EBP-β may not be responsible for increased transcription from the SerpinB2 promoter in response to LPS.
T211 0-230 Sentence denotes These data show an inverse relationship between C/EBP-β and p-C/EBP-βT217 recruitment, and indicate that T217-phosphorylated C/EBP-β may not be responsible for increased transcription from the SerpinB2 promoter in response to LPS.

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15176 74-85 Binding denotes recruitment
T15175 144-155 Regulation denotes responsible
T15174 105-124 Phosphorylation denotes T217-phosphorylated
T15173 170-183 Transcription denotes transcription
T15172 160-169 Positive_regulation denotes increased
T15158 193-201 Protein denotes SerpinB2
T15157 125-132 Protein denotes C/EBP-β
T15156 60-73 Protein denotes p-C/EBP-βT217
T15155 48-55 Protein denotes C/EBP-β
R11201 T15155 T15176 themeOf C/EBP-β,recruitment
R11202 T15156 T15176 themeOf p-C/EBP-βT217,recruitment
R11203 T15157 T15174 themeOf C/EBP-β,T217-phosphorylated
R11204 T15157 T15175 themeOf C/EBP-β,responsible
R11205 T15158 T15172 themeOf SerpinB2,increased
R11206 T15158 T15173 themeOf SerpinB2,transcription
R11207 T15173 T15172 themeOf transcription,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15268 74-85 Binding denotes recruitment
T15267 105-124 Phosphorylation denotes T217-phosphorylated
T15266 144-155 Regulation denotes responsible
T15254 193-201 Protein denotes SerpinB2
T15253 125-132 Protein denotes C/EBP-β
T15252 60-73 Protein denotes p-C/EBP-βT217
T15251 48-55 Protein denotes C/EBP-β
R11255 T15251 T15268 themeOf C/EBP-β,recruitment
R11256 T15252 T15268 themeOf p-C/EBP-βT217,recruitment
R11257 T15253 T15267 themeOf C/EBP-β,T217-phosphorylated
R11258 T15253 T15266 themeOf C/EBP-β,responsible

DLUT931

Id Subject Object Predicate Lexical cue
T15233 160-169 Positive_regulation denotes increased
T15232 144-155 Positive_regulation denotes responsible
T15231 170-183 Transcription denotes transcription
T15230 105-124 Phosphorylation denotes T217-phosphorylated
T15229 74-85 Binding denotes recruitment
T15217 193-201 Protein denotes SerpinB2
T15216 125-132 Protein denotes C/EBP-β
T15215 60-73 Protein denotes p-C/EBP-βT217
T15214 48-55 Protein denotes C/EBP-β
R11229 T15214 T15229 themeOf C/EBP-β,recruitment
R11230 T15215 T15229 themeOf p-C/EBP-βT217,recruitment
R11231 T15216 T15230 themeOf C/EBP-β,T217-phosphorylated
R11232 T15216 T15232 causeOf C/EBP-β,responsible
R11233 T15217 T15231 themeOf SerpinB2,transcription
R11237 T15231 T15232 themeOf transcription,responsible
R11238 T15231 T15233 themeOf transcription,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15328 105-132 Phosphorylation denotes T217-phosphorylated C/EBP-β
T15322 60-85 Binding denotes p-C/EBP-βT217 recruitment
T15315 105-124 Entity denotes T217-phosphorylated
T15308 48-55 Protein denotes C/EBP-β
T15297 193-201 Protein denotes SerpinB2
T15293 189-210 Entity denotes the SerpinB2 promoter
T15277 60-73 Protein denotes p-C/EBP-βT217
T15271 105-132 Protein denotes T217-phosphorylated C/EBP-β
R11261 T15271 T15328 themeOf T217-phosphorylated C/EBP-β,T217-phosphorylated C/EBP-β
R11263 T15277 T15322 themeOf p-C/EBP-βT217,p-C/EBP-βT217 recruitment
R11265 T15293 T15297 partOf the SerpinB2 promoter,SerpinB2
R11275 T15315 T15271 partOf T217-phosphorylated,T217-phosphorylated C/EBP-β
R11276 T15315 T15328 siteOf T217-phosphorylated,T217-phosphorylated C/EBP-β

testone

Id Subject Object Predicate Lexical cue
T14821 170-183 Transcription denotes transcription
T14820 160-169 Positive_regulation denotes increased
T14819 110-124 Phosphorylation denotes phosphorylated
T14818 74-85 Binding denotes recruitment
R10896 T14821 T14820 themeOf transcription,increased

test3

Id Subject Object Predicate Lexical cue
T14838 170-183 Transcription denotes transcription
T14837 160-169 Positive_regulation denotes increased
T14836 144-155 Positive_regulation denotes responsible
T14835 110-124 Phosphorylation denotes phosphorylated
T14834 74-85 Binding denotes recruitment
R10900 T14837 T14836 themeOf increased,responsible
R10901 T14838 T14837 themeOf transcription,increased