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PMC:3589482 / 339-650 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T856 278-286 NN denotes promoter
T855 269-277 CD denotes SerpinB2
T854 255-268 JJ denotes LPS-regulated
T853 251-254 DT denotes the
T852 247-250 VB denotes map
T851 244-246 TO denotes To
T850 242-243 . denotes .
T849 231-242 NNS denotes macrophages
T848 224-230 JJ denotes murine
T847 221-223 IN denotes in
T846 217-220 NNS denotes hrs
T845 214-216 CD denotes 24
T844 211-213 IN denotes of
T843 204-210 NN denotes period
T842 202-203 DT denotes a
T841 197-201 IN denotes over
T840 187-196 JJ denotes 1000-fold
T839 186-187 CD denotes ∼
T838 183-185 IN denotes by
T837 181-182 -RRB- denotes )
T836 177-181 CD denotes TLR4
T835 176-177 -LRB- denotes (
T834 174-175 CD denotes 4
T833 165-173 NN denotes receptor
T832 155-164 JJ denotes toll-like
T831 151-154 DT denotes the
T830 147-150 IN denotes via
T829 136-146 NN denotes expression
T828 127-135 NNP denotes SerpinB2
T827 120-126 VB denotes induce
T826 116-119 MD denotes can
T825 114-115 , denotes ,
T824 105-114 NN denotes endotoxin
T823 95-104 JJ denotes bacterial
T822 88-94 JJ denotes potent
T821 86-87 DT denotes a
T820 84-85 , denotes ,
T819 83-84 -RRB- denotes )
T818 80-83 NNP denotes LPS
T817 79-80 -LRB- denotes (
T816 60-78 NNP denotes Lipopolysaccharide
T815 58-59 . denotes .
T814 48-58 NNS denotes activators
T813 36-47 NN denotes plasminogen
T812 33-35 IN denotes of
T811 22-32 NN denotes inhibition
T810 18-21 CC denotes and
T809 16-17 , denotes ,
T808 8-16 NN denotes survival
T860 299-310 VBD denotes transfected
T859 296-298 PRP denotes we
T858 294-295 , denotes ,
T857 287-294 NNS denotes regions
R396 T809 T808 punct ",",survival
R397 T810 T808 cc and,survival
R398 T811 T808 conj inhibition,survival
R399 T812 T811 prep of,inhibition
R400 T813 T814 compound plasminogen,activators
R401 T814 T812 pobj activators,of
R403 T816 T827 npadvmod Lipopolysaccharide,induce
R404 T817 T818 punct (,LPS
R405 T818 T816 appos LPS,Lipopolysaccharide
R406 T819 T816 punct ),Lipopolysaccharide
R407 T820 T816 punct ",",Lipopolysaccharide
R408 T821 T824 det a,endotoxin
R409 T822 T824 amod potent,endotoxin
R410 T823 T824 amod bacterial,endotoxin
R411 T824 T816 appos endotoxin,Lipopolysaccharide
R412 T825 T827 punct ",",induce
R413 T826 T827 aux can,induce
R414 T827 T827 ROOT induce,induce
R415 T828 T829 compound SerpinB2,expression
R416 T829 T827 dobj expression,induce
R417 T830 T827 prep via,induce
R418 T831 T833 det the,receptor
R419 T832 T833 amod toll-like,receptor
R420 T833 T830 pobj receptor,via
R421 T834 T833 nummod 4,receptor
R422 T835 T833 punct (,receptor
R423 T836 T833 appos TLR4,receptor
R424 T837 T833 punct ),receptor
R425 T838 T827 prep by,induce
R426 T839 T838 pobj ∼,by
R427 T840 T827 advcl 1000-fold,induce
R428 T841 T840 prep over,1000-fold
R429 T842 T843 det a,period
R430 T843 T841 pobj period,over
R431 T844 T843 prep of,period
R432 T845 T846 nummod 24,hrs
R433 T846 T844 pobj hrs,of
R434 T847 T846 prep in,hrs
R435 T848 T849 amod murine,macrophages
R436 T849 T847 pobj macrophages,in
R437 T850 T827 punct .,induce
R438 T851 T852 aux To,map
R439 T852 T860 advcl map,transfected
R440 T853 T857 det the,regions
R441 T854 T857 amod LPS-regulated,regions
R442 T855 T857 nummod SerpinB2,regions
R443 T856 T857 compound promoter,regions
R444 T857 T852 dobj regions,map
R445 T858 T860 punct ",",transfected
R446 T859 T860 nsubj we,transfected
R447 T860 T860 ROOT transfected,transfected

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T307 214-216 CD denotes 24
T306 211-213 IN denotes of
T305 204-210 NN denotes period
T304 202-203 DT denotes a
T303 197-201 IN denotes over
T302 186-196 RB denotes ∼1000-fold
T301 183-185 IN denotes by
T300 181-182 -RRB- denotes )
T299 177-181 NN denotes TLR4
T298 176-177 -LRB- denotes (
T297 174-175 CD denotes 4
T296 165-173 NN denotes receptor
T295 155-164 JJ denotes toll-like
T294 151-154 DT denotes the
T293 147-150 IN denotes via
T292 136-146 NN denotes expression
T291 127-135 NN denotes SerpinB2
T290 120-126 VB denotes induce
T289 116-119 MD denotes can
T288 114-115 -COMMA- denotes ,
T287 105-114 NN denotes endotoxin
T286 95-104 JJ denotes bacterial
T285 88-94 JJ denotes potent
T284 86-87 DT denotes a
T283 84-85 -COMMA- denotes ,
T282 83-84 -RRB- denotes )
T281 80-83 NN denotes LPS
T280 79-80 -LRB- denotes (
T279 60-78 NN denotes Lipopolysaccharide
T278 48-58 NN denotes activators
T277 36-47 NN denotes plasminogen
T276 33-35 IN denotes of
T275 22-32 NN denotes inhibition
T274 18-21 CC denotes and
T273 16-17 -COMMA- denotes ,
T272 8-16 NN denotes survival
T321 299-310 VB denotes transfected
T320 296-298 PRP denotes we
T319 294-295 -COMMA- denotes ,
T318 287-294 NN denotes regions
T317 278-286 NN denotes promoter
T316 269-277 NN denotes SerpinB2
T315 255-268 JJ denotes LPS-regulated
T314 251-254 DT denotes the
T313 247-250 VB denotes map
T312 244-246 TO denotes To
T311 231-242 NN denotes macrophages
T310 224-230 JJ denotes murine
T309 221-223 IN denotes in
T308 217-220 NN denotes hrs
R85 T274 T273 arg1Of and,","
R86 T275 T274 arg2Of inhibition,and
R87 T275 T276 arg1Of inhibition,of
R88 T278 T276 arg2Of activators,of
R89 T278 T277 arg1Of activators,plasminogen
R90 T279 T280 arg1Of Lipopolysaccharide,(
R91 T279 T283 arg1Of Lipopolysaccharide,","
R92 T279 T289 arg1Of Lipopolysaccharide,can
R93 T279 T290 arg1Of Lipopolysaccharide,induce
R94 T281 T280 arg2Of LPS,(
R95 T282 T280 arg3Of ),(
R96 T287 T283 arg2Of endotoxin,","
R97 T287 T284 arg1Of endotoxin,a
R98 T287 T285 arg1Of endotoxin,potent
R99 T287 T286 arg1Of endotoxin,bacterial
R100 T290 T288 arg1Of induce,","
R101 T290 T289 arg2Of induce,can
R102 T290 T293 arg1Of induce,via
R103 T290 T301 arg1Of induce,by
R104 T290 T303 arg1Of induce,over
R105 T292 T290 arg2Of expression,induce
R106 T292 T291 arg1Of expression,SerpinB2
R107 T296 T293 arg2Of receptor,via
R108 T296 T294 arg1Of receptor,the
R109 T296 T295 arg1Of receptor,toll-like
R110 T296 T297 arg1Of receptor,4
R111 T296 T298 arg1Of receptor,(
R112 T299 T298 arg2Of TLR4,(
R113 T300 T298 arg3Of ),(
R114 T302 T301 arg2Of ∼1000-fold,by
R115 T305 T303 arg2Of period,over
R116 T305 T304 arg1Of period,a
R117 T305 T306 arg1Of period,of
R118 T305 T309 arg1Of period,in
R119 T308 T306 arg2Of hrs,of
R120 T308 T307 arg1Of hrs,24
R121 T311 T309 arg2Of macrophages,in
R122 T311 T310 arg1Of macrophages,murine
R123 T313 T312 arg1Of map,To
R124 T318 T313 arg2Of regions,map
R125 T318 T314 arg1Of regions,the
R126 T318 T315 arg1Of regions,LPS-regulated
R127 T318 T316 arg1Of regions,SerpinB2
R128 T318 T317 arg1Of regions,promoter
R129 T320 T313 arg1Of we,map
R130 T320 T321 arg1Of we,transfected
R131 T321 T312 modOf transfected,To
R132 T321 T319 arg1Of transfected,","

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T162 127-135 Protein denotes SerpinB2
T163 155-175 Protein denotes toll-like receptor 4
T164 177-181 Protein denotes TLR4
T165 269-277 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 177-181 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T531 127-135 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T532 269-277 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T183 22-58 http://purl.obolibrary.org/obo/GO_0010757 denotes inhibition of plasminogen activators
T179 36-58 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activators

sentences

Id Subject Object Predicate Lexical cue
T101 60-243 Sentence denotes Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages.
T5 60-243 Sentence denotes Lipopolysaccharide (LPS), a potent bacterial endotoxin, can induce SerpinB2 expression via the toll-like receptor 4 (TLR4) by ∼1000-fold over a period of 24 hrs in murine macrophages.

simple1

Id Subject Object Predicate Lexical cue
T215 127-135 Protein denotes SerpinB2
T216 155-175 Protein denotes toll-like receptor 4
T217 177-181 Protein denotes TLR4
T218 269-277 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T514 120-126 Positive_regulation denotes induce
T513 136-146 Gene_expression denotes expression
T500 269-277 Protein denotes SerpinB2
T498 177-181 Protein denotes TLR4
T496 127-135 Protein denotes SerpinB2
T497 155-175 Protein denotes toll-like receptor 4
R308 T513 T514 themeOf expression,induce
R680 T496 T513 themeOf SerpinB2,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T606 127-135 Protein denotes SerpinB2
T607 155-175 Protein denotes toll-like receptor 4
T608 177-181 Protein denotes TLR4
T610 269-277 Protein denotes SerpinB2
T623 136-146 Gene_expression denotes expression
T624 120-126 Positive_regulation denotes induce
R718 T606 T623 themeOf SerpinB2,expression
R720 T607 T624 causeOf toll-like receptor 4,induce
R733 T623 T624 themeOf expression,induce

DLUT931

Id Subject Object Predicate Lexical cue
T572 127-135 Protein denotes SerpinB2
T573 155-175 Protein denotes toll-like receptor 4
T574 177-181 Protein denotes TLR4
T576 269-277 Protein denotes SerpinB2
T590 136-146 Gene_expression denotes expression
T591 120-126 Positive_regulation denotes induce
R685 T572 T590 themeOf SerpinB2,expression
R686 T573 T591 causeOf toll-like receptor 4,induce
R693 T590 T591 themeOf expression,induce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T760 214-242 Localization denotes 24 hrs in murine macrophages
T759 127-146 Gene_expression denotes SerpinB2 expression
T750 80-83 Entity denotes LPS
T748 127-135 Protein denotes SerpinB2
T709 60-85 Entity denotes Lipopolysaccharide (LPS),
T711 105-114 Entity denotes endotoxin
T714 151-182 Protein denotes the toll-like receptor 4 (TLR4)
T715 177-181 Protein denotes TLR4
T719 214-242 Protein denotes 24 hrs in murine macrophages
T720 269-277 Protein denotes SerpinB2
T724 224-242 Entity denotes murine macrophages
T729 251-295 Entity denotes the LPS-regulated SerpinB2 promoter regions,
T733 33-58 Entity denotes of plasminogen activators
T741 255-268 Entity denotes LPS-regulated
T745 36-47 Protein denotes plasminogen
R348 T748 T759 themeOf SerpinB2,SerpinB2 expression
R721 T719 T760 themeOf 24 hrs in murine macrophages,24 hrs in murine macrophages
R723 T724 T760 locationOf murine macrophages,24 hrs in murine macrophages

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T648 269-286 Protein denotes SerpinB2 promoter
T647 120-126 Positive_regulation denotes induce
T646 136-146 Gene_expression denotes expression
T645 127-135 Protein denotes SerpinB2
T644 22-32 Negative_regulation denotes inhibition
T641 36-58 Protein denotes plasminogen activators
R323 T641 T644 themeOf plasminogen activators,inhibition
R324 T645 T646 themeOf SerpinB2,expression
R325 T646 T647 themeOf expression,induce

testone

Id Subject Object Predicate Lexical cue
T40 136-146 Gene_expression denotes expression
T39 120-126 Positive_regulation denotes induce
T28 269-277 Protein denotes SerpinB2
T27 177-181 Protein denotes TLR4
T26 155-175 Protein denotes toll-like receptor 4
T25 127-135 Protein denotes SerpinB2
R3 T27 T26 equivalentTo TLR4,toll-like receptor 4
R8 T40 T39 themeOf expression,induce
R2 T25 T40 themeOf SerpinB2,expression

test3

Id Subject Object Predicate Lexical cue
T79 269-277 Protein denotes SerpinB2
T78 177-181 Protein denotes TLR4
T77 155-175 Protein denotes toll-like receptor 4
T76 136-146 Gene_expression denotes expression
T75 127-135 Protein denotes SerpinB2
T74 120-126 Positive_regulation denotes induce
T57 269-277 Protein denotes SerpinB2
T56 177-181 Protein denotes TLR4
T55 155-175 Protein denotes toll-like receptor 4
T54 127-135 Protein denotes SerpinB2
R17 T75 T76 themeOf SerpinB2,expression
R18 T76 T74 themeOf expression,induce
R19 T78 T77 equivalentTo TLR4,toll-like receptor 4