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PMC:3589482 / 33761-34042 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15466 280-281 . denotes .
T15465 279-280 -RRB- denotes )
T15464 278-279 CD denotes 7
T15463 273-277 NN denotes Fig.
T15462 272-273 -LRB- denotes (
T15461 268-271 NNS denotes hrs
T15460 266-267 CD denotes 8
T15459 260-265 IN denotes after
T15458 254-259 NNS denotes cells
T15457 241-253 JJ denotes unstimulated
T15456 236-240 IN denotes over
T15455 228-235 JJ denotes 10-fold
T15454 225-227 IN denotes as
T15453 220-224 RB denotes much
T15452 217-219 RB denotes as
T15451 208-216 VBG denotes reaching
T15450 204-207 NNP denotes LPS
T15449 201-203 TO denotes to
T15448 192-200 NN denotes response
T15447 189-191 IN denotes in
T15446 178-188 RB denotes temporally
T15445 168-177 VBD denotes increased
T15444 164-167 CC denotes and
T15443 152-163 NNS denotes macrophages
T15442 139-151 JJ denotes unstimulated
T15441 136-138 IN denotes in
T15440 127-135 NN denotes promoter
T15439 123-126 DT denotes the
T15438 118-122 IN denotes with
T15437 106-117 NN denotes association
T15436 102-105 PRP$ denotes its
T15435 99-101 IN denotes by
T15434 86-98 VBN denotes demonstrated
T15433 83-85 IN denotes as
T15432 74-82 NN denotes promoter
T15431 65-73 NNP denotes SerpinB2
T15430 61-64 DT denotes the
T15429 58-60 IN denotes at
T15428 50-57 JJ denotes present
T15427 35-49 RB denotes constitutively
T15426 32-34 VBZ denotes is
T15425 30-31 NN denotes β
T15424 29-30 : denotes -
T15423 24-29 NNP denotes C/EBP
T15422 19-23 IN denotes that
T15421 12-18 VBD denotes showed
T15420 4-11 NNS denotes results
T15419 0-3 DT denotes The
R11367 T15419 T15420 det The,results
R11368 T15420 T15421 nsubj results,showed
R11369 T15421 T15421 ROOT showed,showed
R11370 T15422 T15426 mark that,is
R11371 T15423 T15425 compound C/EBP,β
R11372 T15424 T15425 punct -,β
R11373 T15425 T15426 nsubj β,is
R11374 T15426 T15421 ccomp is,showed
R11375 T15427 T15428 advmod constitutively,present
R11376 T15428 T15426 acomp present,is
R11377 T15429 T15428 prep at,present
R11378 T15430 T15432 det the,promoter
R11379 T15431 T15432 compound SerpinB2,promoter
R11380 T15432 T15429 pobj promoter,at
R11381 T15433 T15434 mark as,demonstrated
R11382 T15434 T15426 advcl demonstrated,is
R11383 T15435 T15434 agent by,demonstrated
R11384 T15436 T15437 poss its,association
R11385 T15437 T15435 pobj association,by
R11386 T15438 T15437 prep with,association
R11387 T15439 T15440 det the,promoter
R11388 T15440 T15438 pobj promoter,with
R11389 T15441 T15440 prep in,promoter
R11390 T15442 T15443 amod unstimulated,macrophages
R11391 T15443 T15441 pobj macrophages,in
R11392 T15444 T15434 cc and,demonstrated
R11393 T15445 T15434 conj increased,demonstrated
R11394 T15446 T15445 advmod temporally,increased
R11395 T15447 T15445 prep in,increased
R11396 T15448 T15447 pobj response,in
R11397 T15449 T15448 prep to,response
R11398 T15450 T15449 pobj LPS,to
R11399 T15451 T15445 advcl reaching,increased
R11400 T15452 T15451 prep as,reaching
R11401 T15453 T15455 amod much,10-fold
R11402 T15454 T15455 quantmod as,10-fold
R11403 T15455 T15452 pobj 10-fold,as
R11404 T15456 T15455 prep over,10-fold
R11405 T15457 T15458 amod unstimulated,cells
R11406 T15458 T15456 pobj cells,over
R11407 T15459 T15455 prep after,10-fold
R11408 T15460 T15461 nummod 8,hrs
R11409 T15461 T15459 pobj hrs,after
R11410 T15462 T15461 punct (,hrs
R11411 T15463 T15461 appos Fig.,hrs
R11412 T15464 T15463 nummod 7,Fig.
R11413 T15465 T15461 punct ),hrs
R11414 T15466 T15421 punct .,showed

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14996 279-280 -RRB- denotes )
T14995 278-279 CD denotes 7
T14994 273-277 NNP denotes Fig.
T14993 272-273 -LRB- denotes (
T14992 268-271 NN denotes hrs
T14991 266-267 CD denotes 8
T14990 260-265 IN denotes after
T14989 254-259 NN denotes cells
T14988 241-253 JJ denotes unstimulated
T14987 236-240 IN denotes over
T14986 228-235 RB denotes 10-fold
T14985 225-227 IN denotes as
T14984 220-224 RB denotes much
T14983 217-219 RB denotes as
T14982 208-216 VB denotes reaching
T14981 204-207 NN denotes LPS
T14980 201-203 TO denotes to
T14979 192-200 NN denotes response
T14978 189-191 IN denotes in
T14977 178-188 RB denotes temporally
T14976 168-177 VB denotes increased
T14975 164-167 CC denotes and
T14974 152-163 NN denotes macrophages
T14973 139-151 JJ denotes unstimulated
T14972 136-138 IN denotes in
T14971 127-135 NN denotes promoter
T14970 123-126 DT denotes the
T14969 118-122 IN denotes with
T14968 106-117 NN denotes association
T14967 102-105 PRP-DOLLAR- denotes its
T14966 99-101 IN denotes by
T14965 86-98 VB denotes demonstrated
T14964 83-85 IN denotes as
T14963 74-82 NN denotes promoter
T14962 65-73 NN denotes SerpinB2
T14961 61-64 DT denotes the
T14960 58-60 IN denotes at
T14959 50-57 JJ denotes present
T14958 35-49 RB denotes constitutively
T14957 32-34 VB denotes is
T14956 24-31 NN denotes C/EBP-β
T14955 19-23 IN denotes that
T14954 12-18 VB denotes showed
T14953 4-11 NN denotes results
T14952 0-3 DT denotes The
R10985 T14953 T14952 arg1Of results,The
R10986 T14953 T14954 arg1Of results,showed
R10987 T14956 T14957 arg1Of C/EBP-β,is
R10988 T14956 T14959 arg1Of C/EBP-β,present
R10989 T14957 T14954 arg2Of is,showed
R10990 T14957 T14955 arg1Of is,that
R10991 T14957 T14964 arg1Of is,as
R10992 T14959 T14957 arg2Of present,is
R10993 T14959 T14958 arg1Of present,constitutively
R10994 T14959 T14960 arg1Of present,at
R10995 T14963 T14960 arg2Of promoter,at
R10996 T14963 T14961 arg1Of promoter,the
R10997 T14963 T14962 arg1Of promoter,SerpinB2
R10998 T14965 T14975 arg1Of demonstrated,and
R10999 T14968 T14965 arg1Of association,demonstrated
R11000 T14968 T14966 arg2Of association,by
R11001 T14968 T14967 arg1Of association,its
R11002 T14968 T14969 arg1Of association,with
R11003 T14968 T14972 arg1Of association,in
R11004 T14971 T14969 arg2Of promoter,with
R11005 T14971 T14970 arg1Of promoter,the
R11006 T14974 T14972 arg2Of macrophages,in
R11007 T14974 T14973 arg1Of macrophages,unstimulated
R11008 T14975 T14964 arg2Of and,as
R11009 T14976 T14975 arg2Of increased,and
R11010 T14976 T14977 arg1Of increased,temporally
R11011 T14976 T14978 arg1Of increased,in
R11012 T14979 T14978 arg2Of response,in
R11013 T14979 T14980 arg1Of response,to
R11014 T14981 T14980 arg2Of LPS,to
R11015 T14981 T14982 arg1Of LPS,reaching
R11016 T14982 T14984 arg1Of reaching,much
R11017 T14982 T14987 arg1Of reaching,over
R11018 T14982 T14990 arg1Of reaching,after
R11019 T14982 T14993 arg1Of reaching,(
R11020 T14984 T14983 arg1Of much,as
R11021 T14984 T14985 arg1Of much,as
R11022 T14986 T14985 arg2Of 10-fold,as
R11023 T14989 T14987 arg2Of cells,over
R11024 T14989 T14988 arg1Of cells,unstimulated
R11025 T14992 T14990 arg2Of hrs,after
R11026 T14992 T14991 arg1Of hrs,8
R11027 T14994 T14993 arg2Of Fig.,(
R11028 T14994 T14995 arg1Of Fig.,7
R11029 T14996 T14993 arg3Of ),(

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T14848 24-31 Antecedent denotes C/EBP-β
T14847 102-105 Anaphor denotes its
R10902 T14847 T14848 boundBy its,C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15188 65-73 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T15179 24-31 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β

GO-BP

Id Subject Object Predicate Lexical cue
T14850 192-207 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS

GO-CC

Id Subject Object Predicate Lexical cue
T14863 254-259 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T14843 0-281 Sentence denotes The results showed that C/EBP-β is constitutively present at the SerpinB2 promoter as demonstrated by its association with the promoter in unstimulated macrophages and increased temporally in response to LPS reaching as much as 10-fold over unstimulated cells after 8 hrs (Fig. 7).
T208 0-281 Sentence denotes The results showed that C/EBP-β is constitutively present at the SerpinB2 promoter as demonstrated by its association with the promoter in unstimulated macrophages and increased temporally in response to LPS reaching as much as 10-fold over unstimulated cells after 8 hrs (Fig. 7).

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15144 65-73 Protein denotes SerpinB2
T15143 24-31 Protein denotes C/EBP-β
T15162 50-57 Gene_expression denotes present
T15161 106-117 Binding denotes association
R11180 T15143 T15161 themeOf C/EBP-β,association
R11181 T15143 T15162 themeOf C/EBP-β,present
R11182 T15144 T15161 themeOf SerpinB2,association
R11183 T15144 T15162 themeOf SerpinB2,present

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15258 106-117 Binding denotes association
T15240 65-73 Protein denotes SerpinB2
T15239 24-31 Protein denotes C/EBP-β
R11241 T15239 T15258 themeOf C/EBP-β,association
R11242 T15240 T15258 themeOf SerpinB2,association

DLUT931

Id Subject Object Predicate Lexical cue
T15220 106-117 Binding denotes association
T15203 65-73 Protein denotes SerpinB2
T15202 24-31 Protein denotes C/EBP-β
R11214 T15202 T15220 themeOf C/EBP-β,association
R11215 T15203 T15220 themeOf SerpinB2,association

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15319 118-135 Entity denotes with the promoter
T15318 24-31 Protein denotes C/EBP-β
T15317 65-73 Protein denotes SerpinB2
T15310 61-82 Entity denotes the SerpinB2 promoter
T15292 266-271 Protein denotes 8 hrs
T15280 204-207 Entity denotes LPS
T15279 273-276 Protein denotes Fig
T15278 152-163 Entity denotes macrophages
R11273 T15310 T15317 partOf the SerpinB2 promoter,SerpinB2

testone

Id Subject Object Predicate Lexical cue
T14804 192-203 Positive_regulation denotes response to
T14803 106-117 Binding denotes association

test3

Id Subject Object Predicate Lexical cue
T14825 106-117 Binding denotes association
T14824 74-82 Entity denotes promoter