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PMC:3589482 / 32839-32979 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25206 139-140 . denotes .
T25205 134-139 NNP denotes shRNA
T25204 128-133 NNP denotes CEBPB
T25203 122-127 JJ denotes human
T25202 118-121 RB denotes not
T25201 114-117 CC denotes and
T25200 108-113 NNP denotes shRNA
T25199 102-107 NNP denotes Cebpb
T25198 95-101 JJ denotes murine
T25197 90-94 IN denotes with
T25196 80-89 NN denotes infection
T25195 70-79 VBG denotes following
T25194 68-69 NN denotes β
T25193 67-68 : denotes -
T25192 62-67 NNP denotes C/EBP
T25191 51-61 JJ denotes endogenous
T25190 48-50 IN denotes of
T25189 38-47 NN denotes knockdown
T25188 28-37 JJ denotes effective
T25187 22-27 VBZ denotes shows
T25186 13-21 NN denotes analysis
T25185 8-12 NN denotes blot
T25184 0-7 JJ denotes Western
R18051 T25184 T25186 amod Western,analysis
R18052 T25185 T25186 compound blot,analysis
R18053 T25186 T25187 nsubj analysis,shows
R18054 T25187 T25187 ROOT shows,shows
R18055 T25188 T25189 amod effective,knockdown
R18056 T25189 T25187 dobj knockdown,shows
R18057 T25190 T25189 prep of,knockdown
R18058 T25191 T25194 amod endogenous,β
R18059 T25192 T25194 compound C/EBP,β
R18060 T25193 T25194 punct -,β
R18061 T25194 T25190 pobj β,of
R18062 T25195 T25189 prep following,knockdown
R18063 T25196 T25195 pobj infection,following
R18064 T25197 T25196 prep with,infection
R18065 T25198 T25200 compound murine,shRNA
R18066 T25199 T25200 compound Cebpb,shRNA
R18067 T25200 T25197 pobj shRNA,with
R18068 T25201 T25200 cc and,shRNA
R18069 T25202 T25203 neg not,human
R18070 T25203 T25205 amod human,shRNA
R18071 T25204 T25205 compound CEBPB,shRNA
R18072 T25205 T25200 conj shRNA,shRNA
R18073 T25206 T25187 punct .,shows

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T24773 134-139 NN denotes shRNA
T24772 128-133 NN denotes CEBPB
T24771 122-127 JJ denotes human
T24770 118-121 RB denotes not
T24769 114-117 CC denotes and
T24768 108-113 NN denotes shRNA
T24767 102-107 NN denotes Cebpb
T24766 95-101 JJ denotes murine
T24765 90-94 IN denotes with
T24764 80-89 NN denotes infection
T24763 70-79 VB denotes following
T24762 62-69 NN denotes C/EBP-β
T24761 51-61 JJ denotes endogenous
T24760 48-50 IN denotes of
T24759 38-47 NN denotes knockdown
T24758 28-37 JJ denotes effective
T24757 22-27 VB denotes shows
T24756 13-21 NN denotes analysis
T24755 8-12 NN denotes blot
T24754 0-7 NN denotes Western
R17749 T24756 T24754 arg1Of analysis,Western
R17750 T24756 T24755 arg1Of analysis,blot
R17751 T24756 T24757 arg1Of analysis,shows
R17752 T24757 T24763 arg1Of shows,following
R17753 T24759 T24757 arg2Of knockdown,shows
R17754 T24759 T24758 arg1Of knockdown,effective
R17755 T24759 T24760 arg1Of knockdown,of
R17756 T24762 T24760 arg2Of C/EBP-β,of
R17757 T24762 T24761 arg1Of C/EBP-β,endogenous
R17758 T24764 T24763 arg2Of infection,following
R17759 T24764 T24765 arg1Of infection,with
R17760 T24768 T24766 arg1Of shRNA,murine
R17761 T24768 T24767 arg1Of shRNA,Cebpb
R17762 T24768 T24769 arg1Of shRNA,and
R17763 T24769 T24765 arg2Of and,with
R17764 T24769 T24770 arg1Of and,not
R17765 T24773 T24769 arg2Of shRNA,and
R17766 T24773 T24771 arg1Of shRNA,human
R17767 T24773 T24772 arg1Of shRNA,CEBPB

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T24615 62-69 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T24860 102-107 http://www.uniprot.org/uniprot/P28033 denotes Cebpb

sentences

Id Subject Object Predicate Lexical cue
T24575 0-140 Sentence denotes Western blot analysis shows effective knockdown of endogenous C/EBP-β following infection with murine Cebpb shRNA and not human CEBPB shRNA.
T202 0-140 Sentence denotes Western blot analysis shows effective knockdown of endogenous C/EBP-β following infection with murine Cebpb shRNA and not human CEBPB shRNA.

simple1

Id Subject Object Predicate Lexical cue
T24628 62-69 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T24851 38-47 Negative_regulation denotes knockdown
T24839 62-69 Protein denotes C/EBP-β
R17819 T24839 T24851 themeOf C/EBP-β,knockdown

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T24920 62-69 Protein denotes C/EBP-β
T24932 38-47 Negative_regulation denotes knockdown
R17855 T24920 T24932 themeOf C/EBP-β,knockdown

DLUT931

Id Subject Object Predicate Lexical cue
T24907 38-47 Negative_regulation denotes knockdown
T24895 62-69 Protein denotes C/EBP-β
R17837 T24895 T24907 themeOf C/EBP-β,knockdown

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25017 48-69 Protein denotes of endogenous C/EBP-β
T25009 128-133 Protein denotes CEBPB
T25002 102-107 Protein denotes Cebpb

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T24963 38-47 Negative_regulation denotes knockdown
T24962 38-47 Negative_regulation denotes knockdown
T24961 80-89 Binding denotes infection
T24960 80-89 Binding denotes infection
T24959 38-47 Negative_regulation denotes knockdown
T24958 118-139 Protein denotes not human CEBPB shRNA
T24957 102-113 Protein denotes Cebpb shRNA
T24956 62-69 Protein denotes C/EBP-β
R17874 T24956 T24959 themeOf C/EBP-β,knockdown
R17875 T24957 T24960 themeOf Cebpb shRNA,infection
R17876 T24958 T24961 themeOf not human CEBPB shRNA,infection
R17877 T24960 T24962 themeOf infection,knockdown
R17878 T24961 T24963 themeOf infection,knockdown

testone

Id Subject Object Predicate Lexical cue
T24526 62-69 Protein denotes C/EBP-β

test3

Id Subject Object Predicate Lexical cue
T24566 62-69 Protein denotes C/EBP-β
T24546 62-69 Protein denotes C/EBP-β