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PMC:3589482 / 3267-3392 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2780 124-125 . denotes .
T2779 123-124 NNP denotes ]
T2778 121-123 CD denotes 30
T2777 120-121 NNP denotes [
T2776 118-119 : denotes ;
T2775 117-118 NNP denotes ]
T2774 115-117 CD denotes 29
T2773 114-115 NNP denotes [
T2772 104-113 NNS denotes oncogenes
T2771 100-103 CC denotes and
T2770 90-99 NNS denotes cytokines
T2769 87-89 IN denotes of
T2768 82-86 DT denotes that
T2767 79-81 TO denotes to
T2766 69-78 JJ denotes analogous
T2765 62-68 NN denotes manner
T2764 53-61 JJ denotes specific
T2763 48-52 NN denotes type
T2762 43-47 NN denotes cell
T2761 41-42 DT denotes a
T2760 38-40 IN denotes in
T2759 28-37 VBN denotes regulated
T2758 21-27 RB denotes highly
T2757 18-20 VBZ denotes is
T2756 13-17 NN denotes gene
T2755 4-12 NNP denotes SerpinB2
T2754 0-3 DT denotes The
R1818 T2754 T2756 det The,gene
R1819 T2755 T2756 compound SerpinB2,gene
R1821 T2756 T2759 nsubjpass gene,regulated
R1822 T2757 T2759 auxpass is,regulated
R1823 T2758 T2759 advmod highly,regulated
R1825 T2759 T2759 ROOT regulated,regulated
R1826 T2760 T2759 prep in,regulated
R1827 T2761 T2765 det a,manner
R1829 T2762 T2763 compound cell,type
R1830 T2763 T2765 nmod type,manner
R1831 T2764 T2765 amod specific,manner
R1833 T2765 T2760 pobj manner,in
R1834 T2766 T2765 amod analogous,manner
R1836 T2767 T2766 prep to,analogous
R1837 T2768 T2767 pobj that,to
R1838 T2769 T2768 prep of,that
R1840 T2770 T2769 pobj cytokines,of
R1841 T2771 T2770 cc and,cytokines
R1842 T2772 T2770 conj oncogenes,cytokines
R1843 T2773 T2775 nmod [,]
R1845 T2774 T2775 nummod 29,]
R1846 T2775 T2768 appos ],that
R1848 T2776 T2775 punct ;,]
R1849 T2777 T2779 nmod [,]
R1850 T2778 T2779 nummod 30,]
R1851 T2779 T2775 appos ],]
R1853 T2780 T2759 punct .,regulated

2_test

Id Subject Object Predicate Lexical cue
23472114-8916932-87899169 121-123 8916932 denotes 30
T82770 121-123 8916932 denotes 30

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1687 18-20 VB denotes is
T1686 13-17 NN denotes gene
T1685 4-12 NN denotes SerpinB2
T1684 0-3 DT denotes The
T1709 123-124 -RRB- denotes ]
T1708 121-123 CD denotes 30
T1707 120-121 -LRB- denotes [
T1706 118-119 -COLON- denotes ;
T1705 117-118 -RRB- denotes ]
T1704 115-117 CD denotes 29
T1703 114-115 -LRB- denotes [
T1702 104-113 NN denotes oncogenes
T1701 100-103 CC denotes and
T1700 90-99 NN denotes cytokines
T1699 87-89 IN denotes of
T1698 82-86 DT denotes that
T1697 79-81 TO denotes to
T1696 69-78 JJ denotes analogous
T1695 62-68 NN denotes manner
T1694 53-61 JJ denotes specific
T1693 48-52 NN denotes type
T1692 43-47 NN denotes cell
T1691 41-42 DT denotes a
T1690 38-40 IN denotes in
T1689 28-37 VB denotes regulated
T1688 21-27 RB denotes highly
R1086 T1686 T1684 arg1Of gene,The
R1087 T1686 T1685 arg1Of gene,SerpinB2
R1088 T1686 T1687 arg1Of gene,is
R1089 T1686 T1689 arg2Of gene,regulated
R1090 T1689 T1687 arg2Of regulated,is
R1091 T1689 T1688 arg1Of regulated,highly
R1092 T1689 T1690 arg1Of regulated,in
R1093 T1689 T1706 arg1Of regulated,;
R1094 T1689 T1707 arg1Of regulated,[
R1095 T1695 T1690 arg2Of manner,in
R1096 T1695 T1691 arg1Of manner,a
R1097 T1695 T1692 arg1Of manner,cell
R1098 T1695 T1693 arg1Of manner,type
R1099 T1695 T1694 arg1Of manner,specific
R1100 T1695 T1696 arg1Of manner,analogous
R1101 T1696 T1697 arg1Of analogous,to
R1102 T1698 T1697 arg2Of that,to
R1103 T1698 T1699 arg1Of that,of
R1104 T1700 T1701 arg1Of cytokines,and
R1105 T1701 T1699 arg2Of and,of
R1106 T1701 T1703 arg1Of and,[
R1107 T1702 T1701 arg2Of oncogenes,and
R1108 T1704 T1703 arg2Of 29,[
R1109 T1705 T1703 arg3Of ],[
R1110 T1708 T1707 arg2Of 30,[
R1111 T1709 T1707 arg3Of ],[

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T1290 4-12 Antecedent denotes SerpinB2

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1307 4-12 Protein denotes SerpinB2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2110 4-12 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-CC

Id Subject Object Predicate Lexical cue
T1391 43-47 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T1212 0-125 Sentence denotes The SerpinB2 gene is highly regulated in a cell type specific manner analogous to that of cytokines and oncogenes [29]; [30].
T22 0-125 Sentence denotes The SerpinB2 gene is highly regulated in a cell type specific manner analogous to that of cytokines and oncogenes [29]; [30].

simple1

Id Subject Object Predicate Lexical cue
T1405 4-12 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2063 4-12 Protein denotes SerpinB2
T2085 28-37 Regulation denotes regulated
R1453 T2063 T2085 themeOf SerpinB2,regulated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2222 4-12 Protein denotes SerpinB2
T2244 28-37 Regulation denotes regulated
R1513 T2222 T2244 themeOf SerpinB2,regulated

DLUT931

Id Subject Object Predicate Lexical cue
T2164 28-37 Regulation denotes regulated
T2141 4-12 Protein denotes SerpinB2
R1481 T2141 T2164 themeOf SerpinB2,regulated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2467 0-118 Regulation denotes The SerpinB2 gene is highly regulated in a cell type specific manner analogous to that of cytokines and oncogenes [29]
T2440 0-17 Protein denotes The SerpinB2 gene
T2421 4-12 Protein denotes SerpinB2
T2420 90-99 Protein denotes cytokines
T2411 43-61 Entity denotes cell type specific
T2378 104-113 Protein denotes oncogenes
R1637 T2440 T2467 themeOf The SerpinB2 gene,The SerpinB2 gene is highly regulated in a cell type specific manner analogous to that of cytokines and oncogenes [29]

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2277 4-17 Protein denotes SerpinB2 gene

testone

Id Subject Object Predicate Lexical cue
T1102 4-12 Protein denotes SerpinB2

test3

Id Subject Object Predicate Lexical cue
T1169 4-12 Protein denotes SerpinB2
T1143 4-12 Protein denotes SerpinB2