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PMC:3589482 / 30937-31168 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14620 230-231 . denotes .
T14619 229-230 NN denotes β
T14618 228-229 : denotes -
T14617 223-228 NNP denotes C/EBP
T14616 212-222 JJ denotes endogenous
T14615 204-211 VBP denotes express
T14614 189-203 RB denotes constitutively
T14613 183-188 NNS denotes cells
T14612 180-182 CD denotes .7
T14611 174-180 NNP denotes RAW264
T14610 168-173 IN denotes since
T14609 166-167 , denotes ,
T14608 165-166 -RRB- denotes )
T14607 164-165 NNP denotes +
T14606 163-164 NNP denotes /
T14605 162-163 NNP denotes +
T14604 157-162 NNP denotes Cebpb
T14603 156-157 -LRB- denotes (
T14602 151-155 NNS denotes MEFs
T14601 141-150 JJ denotes wild-type
T14600 137-140 CC denotes and
T14599 135-136 -RRB- denotes )
T14598 134-135 NNP denotes −
T14597 133-134 NNP denotes /
T14596 132-133 NNP denotes −
T14595 126-131 NNP denotes Cebpb
T14594 125-126 -LRB- denotes (
T14593 118-124 NN denotes β-null
T14592 117-118 : denotes -
T14591 112-117 NNP denotes C/EBP
T14590 103-111 VBD denotes utilized
T14589 100-102 PRP denotes we
T14588 98-99 , denotes ,
T14587 95-98 NNP denotes LPS
T14586 92-94 TO denotes to
T14585 83-91 NN denotes response
T14584 80-82 IN denotes in
T14583 69-79 NN denotes expression
T14582 64-68 NNP denotes mRNA
T14581 55-63 NNP denotes SerpinB2
T14580 44-54 JJ denotes endogenous
T14579 41-43 TO denotes to
T14578 39-40 NN denotes β
T14577 38-39 : denotes -
T14576 33-38 NNP denotes C/EBP
T14575 30-32 IN denotes of
T14574 19-29 NN denotes importance
T14573 15-18 DT denotes the
T14572 3-14 VB denotes investigate
T14571 0-2 TO denotes To
R10703 T14571 T14572 aux To,investigate
R10704 T14572 T14590 advcl investigate,utilized
R10705 T14573 T14574 det the,importance
R10706 T14574 T14572 dobj importance,investigate
R10707 T14575 T14574 prep of,importance
R10708 T14576 T14578 compound C/EBP,β
R10709 T14577 T14578 punct -,β
R10710 T14578 T14575 pobj β,of
R10711 T14579 T14580 aux to,endogenous
R10712 T14580 T14583 amod endogenous,expression
R10713 T14581 T14582 compound SerpinB2,mRNA
R10714 T14582 T14583 compound mRNA,expression
R10715 T14583 T14572 dobj expression,investigate
R10716 T14584 T14572 prep in,investigate
R10717 T14585 T14584 pobj response,in
R10718 T14586 T14585 prep to,response
R10719 T14587 T14586 pobj LPS,to
R10720 T14588 T14590 punct ",",utilized
R10721 T14589 T14590 nsubj we,utilized
R10722 T14590 T14590 ROOT utilized,utilized
R10723 T14591 T14590 dobj C/EBP,utilized
R10724 T14592 T14591 punct -,C/EBP
R10725 T14593 T14591 appos β-null,C/EBP
R10726 T14594 T14598 punct (,−
R10727 T14595 T14598 compound Cebpb,−
R10728 T14596 T14598 compound −,−
R10729 T14597 T14598 compound /,−
R10730 T14598 T14593 appos −,β-null
R10731 T14599 T14598 punct ),−
R10732 T14600 T14593 cc and,β-null
R10733 T14601 T14602 amod wild-type,MEFs
R10734 T14602 T14593 conj MEFs,β-null
R10735 T14603 T14607 punct (,+
R10736 T14604 T14607 compound Cebpb,+
R10737 T14605 T14607 compound +,+
R10738 T14606 T14607 compound /,+
R10739 T14607 T14591 appos +,C/EBP
R10740 T14608 T14591 punct ),C/EBP
R10741 T14609 T14590 punct ",",utilized
R10742 T14610 T14615 mark since,express
R10743 T14611 T14615 nsubj RAW264,express
R10744 T14612 T14613 nummod .7,cells
R10745 T14613 T14615 nsubj cells,express
R10746 T14614 T14615 advmod constitutively,express
R10747 T14615 T14590 advcl express,utilized
R10748 T14616 T14619 amod endogenous,β
R10749 T14617 T14619 compound C/EBP,β
R10750 T14618 T14619 punct -,β
R10751 T14619 T14615 dobj β,express
R10752 T14620 T14590 punct .,utilized

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14109 223-230 NN denotes C/EBP-β
T14108 212-222 JJ denotes endogenous
T14107 204-211 VB denotes express
T14106 189-203 RB denotes constitutively
T14105 183-188 NN denotes cells
T14104 174-182 NN denotes RAW264.7
T14103 168-173 IN denotes since
T14102 166-167 -COMMA- denotes ,
T14101 165-166 -RRB- denotes )
T14100 157-165 JJ denotes Cebpb+/+
T14099 156-157 -LRB- denotes (
T14098 151-155 NN denotes MEFs
T14097 141-150 JJ denotes wild-type
T14096 137-140 CC denotes and
T14095 135-136 -RRB- denotes )
T14094 126-135 NN denotes Cebpb −/−
T14093 125-126 -LRB- denotes (
T14092 112-124 JJ denotes C/EBP-β-null
T14091 103-111 VB denotes utilized
T14090 100-102 PRP denotes we
T14089 98-99 -COMMA- denotes ,
T14088 95-98 NN denotes LPS
T14087 92-94 TO denotes to
T14086 83-91 NN denotes response
T14085 80-82 IN denotes in
T14084 69-79 NN denotes expression
T14083 64-68 NN denotes mRNA
T14082 55-63 NN denotes SerpinB2
T14081 44-54 JJ denotes endogenous
T14080 41-43 TO denotes to
T14079 33-40 NN denotes C/EBP-β
T14078 30-32 IN denotes of
T14077 19-29 NN denotes importance
T14076 15-18 DT denotes the
T14075 3-14 VB denotes investigate
T14074 0-2 TO denotes To
R10354 T14075 T14074 arg1Of investigate,To
R10355 T14077 T14075 arg2Of importance,investigate
R10356 T14077 T14076 arg1Of importance,the
R10357 T14077 T14078 arg1Of importance,of
R10358 T14077 T14080 arg1Of importance,to
R10359 T14079 T14078 arg2Of C/EBP-β,of
R10360 T14084 T14080 arg2Of expression,to
R10361 T14084 T14081 arg1Of expression,endogenous
R10362 T14084 T14082 arg1Of expression,SerpinB2
R10363 T14084 T14083 arg1Of expression,mRNA
R10364 T14084 T14085 arg1Of expression,in
R10365 T14085 T14087 arg1Of in,to
R10366 T14086 T14085 arg2Of response,in
R10367 T14088 T14085 arg3Of LPS,in
R10368 T14090 T14075 arg1Of we,investigate
R10369 T14090 T14091 arg1Of we,utilized
R10370 T14091 T14074 modOf utilized,To
R10371 T14091 T14089 arg1Of utilized,","
R10372 T14091 T14102 arg1Of utilized,","
R10373 T14091 T14103 arg1Of utilized,since
R10374 T14092 T14093 arg1Of C/EBP-β-null,(
R10375 T14092 T14096 arg1Of C/EBP-β-null,and
R10376 T14094 T14093 arg2Of Cebpb −/−,(
R10377 T14095 T14093 arg3Of ),(
R10378 T14096 T14091 arg2Of and,utilized
R10379 T14098 T14096 arg2Of MEFs,and
R10380 T14098 T14097 arg1Of MEFs,wild-type
R10381 T14098 T14099 arg1Of MEFs,(
R10382 T14100 T14099 arg2Of Cebpb+/+,(
R10383 T14101 T14099 arg3Of ),(
R10384 T14105 T14104 arg1Of cells,RAW264.7
R10385 T14105 T14107 arg1Of cells,express
R10386 T14107 T14103 arg2Of express,since
R10387 T14107 T14106 arg1Of express,constitutively
R10388 T14109 T14107 arg2Of C/EBP-β,express
R10389 T14109 T14108 arg1Of C/EBP-β,endogenous

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T14025 223-230 Protein denotes C/EBP-β
T14024 157-162 Protein denotes Cebpb
T14023 126-131 Protein denotes Cebpb
T14022 112-119 Protein denotes C/EBP-β
T14021 55-63 Protein denotes SerpinB2
T14020 33-40 Protein denotes C/EBP-β

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14297 223-230 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T14296 112-119 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T14295 33-40 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T14303 55-63 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T14037 83-98 http://purl.obolibrary.org/obo/GO_0032496 denotes response to LPS

GO-CC

Id Subject Object Predicate Lexical cue
T14039 183-188 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T13961 0-231 Sentence denotes To investigate the importance of C/EBP-β to endogenous SerpinB2 mRNA expression in response to LPS, we utilized C/EBP-β-null (Cebpb −/−) and wild-type MEFs (Cebpb+/+), since RAW264.7 cells constitutively express endogenous C/EBP-β.
T190 0-231 Sentence denotes To investigate the importance of C/EBP-β to endogenous SerpinB2 mRNA expression in response to LPS, we utilized C/EBP-β-null (Cebpb −/−) and wild-type MEFs (Cebpb+/+), since RAW264.7 cells constitutively express endogenous C/EBP-β.

simple1

Id Subject Object Predicate Lexical cue
T14047 223-230 Protein denotes C/EBP-β
T14046 157-162 Protein denotes Cebpb
T14045 126-131 Protein denotes Cebpb
T14044 112-119 Protein denotes C/EBP-β
T14043 55-63 Protein denotes SerpinB2
T14042 33-40 Protein denotes C/EBP-β

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14275 19-29 Positive_regulation denotes importance
T14274 204-211 Gene_expression denotes express
T14273 69-79 Transcription denotes expression
T14258 223-230 Protein denotes C/EBP-β
T14257 157-162 Protein denotes Cebpb
T14256 126-131 Protein denotes Cebpb
T14255 112-119 Protein denotes C/EBP-β
T14254 55-63 Protein denotes SerpinB2
T14253 33-40 Protein denotes C/EBP-β
R10517 T14253 T14275 themeOf C/EBP-β,importance
R10518 T14254 T14273 themeOf SerpinB2,expression
R10519 T14258 T14274 themeOf C/EBP-β,express
R10533 T14273 T14275 themeOf expression,importance

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14407 204-211 Gene_expression denotes express
T14392 223-230 Protein denotes C/EBP-β
T14391 157-162 Protein denotes Cebpb
T14390 126-131 Protein denotes Cebpb
T14389 112-119 Protein denotes C/EBP-β
T14388 55-63 Protein denotes SerpinB2
T14387 33-40 Protein denotes C/EBP-β
T14409 69-79 Transcription denotes expression
T14408 19-29 Positive_regulation denotes importance
R10591 T14387 T14408 themeOf C/EBP-β,importance
R10592 T14388 T14409 themeOf SerpinB2,expression
R10593 T14392 T14407 themeOf C/EBP-β,express

DLUT931

Id Subject Object Predicate Lexical cue
T14336 19-29 Positive_regulation denotes importance
T14335 204-211 Gene_expression denotes express
T14334 120-124 Negative_regulation denotes null
T14333 69-79 Transcription denotes expression
T14317 223-230 Protein denotes C/EBP-β
T14316 157-162 Protein denotes Cebpb
T14315 126-131 Protein denotes Cebpb
T14314 112-119 Protein denotes C/EBP-β
T14313 55-63 Protein denotes SerpinB2
T14312 33-40 Protein denotes C/EBP-β
R10546 T14312 T14336 causeOf C/EBP-β,importance
R10547 T14313 T14333 themeOf SerpinB2,expression
R10548 T14314 T14334 themeOf C/EBP-β,null
R10549 T14315 T14334 themeOf Cebpb,null
R10550 T14317 T14335 themeOf C/EBP-β,express
R10564 T14333 T14336 themeOf expression,importance

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14524 212-230 Protein denotes endogenous C/EBP-β
T14522 30-40 Protein denotes of C/EBP-β
T14515 112-136 Protein denotes C/EBP-β-null (Cebpb −/−)
T14509 44-63 Protein denotes endogenous SerpinB2
T14508 141-167 Protein denotes wild-type MEFs (Cebpb+/+),
T14505 64-68 Protein denotes mRNA
T14551 64-99 Gene_expression denotes mRNA expression in response to LPS,
T14550 64-99 Transcription denotes mRNA expression in response to LPS,
R10670 T14505 T14550 themeOf mRNA,"mRNA expression in response to LPS,"
R10671 T14505 T14551 themeOf mRNA,"mRNA expression in response to LPS,"

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14441 19-29 Positive_regulation denotes importance
T14440 204-211 Gene_expression denotes express
T14439 83-91 Positive_regulation denotes response
T14438 69-79 Gene_expression denotes expression
T14437 212-230 Protein denotes endogenous C/EBP-β
T14436 126-131 Protein denotes Cebpb
T14435 112-124 Protein denotes C/EBP-β-null
T14434 55-68 Protein denotes SerpinB2 mRNA
T14433 33-40 Protein denotes C/EBP-β
R10626 T14433 T14441 causeOf C/EBP-β,importance
R10627 T14434 T14438 themeOf SerpinB2 mRNA,expression
R10628 T14437 T14440 themeOf endogenous C/EBP-β,express
R10629 T14438 T14439 themeOf expression,response
R10630 T14438 T14441 themeOf expression,importance

testone

Id Subject Object Predicate Lexical cue
T13882 204-211 Gene_expression denotes express
T13881 120-124 Negative_regulation denotes null
T13880 64-79 Transcription denotes mRNA expression
T13865 223-230 Protein denotes C/EBP-β
T13864 157-162 Protein denotes Cebpb
T13863 126-131 Protein denotes Cebpb
T13862 112-119 Protein denotes C/EBP-β
T13861 55-63 Protein denotes SerpinB2
T13860 33-40 Protein denotes C/EBP-β
R10249 T13861 T13880 themeOf SerpinB2,mRNA expression
R10250 T13862 T13881 themeOf C/EBP-β,null
R10251 T13865 T13882 themeOf C/EBP-β,express

test3

Id Subject Object Predicate Lexical cue
T13931 223-230 Protein denotes C/EBP-β
T13930 204-211 Gene_expression denotes express
T13929 157-162 Protein denotes Cebpb
T13928 126-131 Protein denotes Cebpb
T13927 120-124 Negative_regulation denotes null
T13926 112-119 Protein denotes C/EBP-β
T13925 80-94 Positive_regulation denotes in response to
T13924 64-79 Transcription denotes mRNA expression
T13923 55-63 Protein denotes SerpinB2
T13922 33-40 Protein denotes C/EBP-β
T13906 223-230 Protein denotes C/EBP-β
T13905 157-162 Protein denotes Cebpb
T13904 126-131 Protein denotes Cebpb
T13903 112-119 Protein denotes C/EBP-β
T13902 55-63 Protein denotes SerpinB2
T13901 33-40 Protein denotes C/EBP-β
R10275 T13923 T13924 themeOf SerpinB2,mRNA expression
R10276 T13924 T13925 themeOf mRNA expression,in response to
R10277 T13926 T13927 themeOf C/EBP-β,null
R10278 T13927 T13925 causeOf null,in response to
R10279 T13931 T13930 themeOf C/EBP-β,express