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PMC:3589482 / 28053-28448 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13045 394-395 . denotes .
T13044 393-394 -RRB- denotes )
T13043 392-393 CD denotes 7
T13042 388-391 CC denotes and
T13041 386-387 CD denotes 6
T13040 380-385 NNS denotes lanes
T13039 378-379 , denotes ,
T13038 376-378 NNP denotes 5B
T13037 371-375 NNP denotes Fig.
T13036 370-371 -LRB- denotes (
T13035 354-369 NN denotes oligonucleotide
T13034 346-353 VBN denotes mutated
T13033 342-345 DT denotes the
T13032 339-341 IN denotes by
T13031 335-338 RB denotes not
T13030 331-334 CC denotes but
T13029 329-330 , denotes ,
T13028 328-329 -RRB- denotes )
T13027 327-328 CD denotes 9
T13026 323-326 CC denotes and
T13025 321-322 CD denotes 8
T13024 315-320 NNS denotes lanes
T13023 313-314 , denotes ,
T13022 311-313 NNP denotes 5B
T13021 306-310 NNP denotes Fig.
T13020 305-306 -LRB- denotes (
T13019 296-304 NN denotes promoter
T13018 288-295 NN denotes albumin
T13017 284-287 NN denotes rat
T13016 280-283 DT denotes the
T13015 275-279 IN denotes from
T13014 270-274 NN denotes site
T13013 262-269 JJ denotes binding
T13012 256-261 NNP denotes C/EBP
T13011 250-255 VBN denotes known
T13010 248-249 DT denotes a
T13009 245-247 IN denotes of
T13008 236-244 NN denotes sequence
T13007 232-235 DT denotes the
T13006 229-231 CC denotes or
T13005 227-228 -RRB- denotes )
T13004 226-227 CD denotes 5
T13003 222-225 CC denotes and
T13002 220-221 CD denotes 4
T13001 214-219 NNS denotes lanes
T13000 212-213 , denotes ,
T12999 210-212 NNP denotes 5B
T12998 205-209 NNP denotes Fig.
T12997 204-205 -LRB- denotes (
T12996 195-203 NN denotes sequence
T12995 190-194 JJ denotes same
T12994 186-189 DT denotes the
T12993 179-185 CC denotes either
T12992 170-178 VBG denotes carrying
T12991 168-169 , denotes ,
T12990 153-168 NN denotes oligonucleotide
T12989 137-152 JJ denotes double-stranded
T12988 127-136 JJ denotes unlabeled
T12987 124-126 IN denotes of
T12986 117-123 NN denotes excess
T12985 114-116 DT denotes an
T12984 111-113 IN denotes by
T12983 101-110 VBN denotes abolished
T12982 98-100 VB denotes be
T12981 92-97 MD denotes could
T12980 88-91 CC denotes and
T12979 82-87 NN denotes probe
T12978 66-81 NN denotes oligonucleotide
T12977 60-65 NNP denotes C/EBP
T12976 53-59 JJ denotes mutant
T12975 49-52 DT denotes the
T12974 43-48 VBG denotes using
T12973 34-42 VBN denotes detected
T12972 30-33 RB denotes not
T12971 26-29 VBD denotes was
T12970 18-25 NN denotes complex
T12969 4-17 JJ denotes LPS-inducible
T12968 0-3 DT denotes The
R9632 T12968 T12970 det The,complex
R9633 T12969 T12970 amod LPS-inducible,complex
R9634 T12970 T12973 nsubjpass complex,detected
R9635 T12971 T12973 auxpass was,detected
R9636 T12972 T12973 neg not,detected
R9637 T12973 T12973 ROOT detected,detected
R9638 T12974 T12973 advcl using,detected
R9639 T12975 T12979 det the,probe
R9640 T12976 T12979 amod mutant,probe
R9641 T12977 T12979 compound C/EBP,probe
R9642 T12978 T12979 compound oligonucleotide,probe
R9643 T12979 T12974 dobj probe,using
R9644 T12980 T12973 cc and,detected
R9645 T12981 T12983 aux could,abolished
R9646 T12982 T12983 auxpass be,abolished
R9647 T12983 T12973 conj abolished,detected
R9648 T12984 T12983 agent by,abolished
R9649 T12985 T12986 det an,excess
R9650 T12986 T12984 pobj excess,by
R9651 T12987 T12986 prep of,excess
R9652 T12988 T12990 amod unlabeled,oligonucleotide
R9653 T12989 T12990 amod double-stranded,oligonucleotide
R9654 T12990 T12987 pobj oligonucleotide,of
R9655 T12991 T12983 punct ",",abolished
R9656 T12992 T12983 advcl carrying,abolished
R9657 T12993 T12996 preconj either,sequence
R9658 T12994 T12996 det the,sequence
R9659 T12995 T12996 amod same,sequence
R9660 T12996 T12992 dobj sequence,carrying
R9661 T12997 T12996 punct (,sequence
R9662 T12998 T12999 compound Fig.,5B
R9663 T12999 T12996 appos 5B,sequence
R9664 T13000 T12999 punct ",",5B
R9665 T13001 T12996 parataxis lanes,sequence
R9666 T13002 T13001 nummod 4,lanes
R9667 T13003 T13002 cc and,4
R9668 T13004 T13002 conj 5,4
R9669 T13005 T13004 punct ),5
R9670 T13006 T13002 cc or,4
R9671 T13007 T13008 det the,sequence
R9672 T13008 T13002 conj sequence,4
R9673 T13009 T13008 prep of,sequence
R9674 T13010 T13014 det a,site
R9675 T13011 T13014 amod known,site
R9676 T13012 T13014 nmod C/EBP,site
R9677 T13013 T13014 amod binding,site
R9678 T13014 T13009 pobj site,of
R9679 T13015 T12992 prep from,carrying
R9680 T13016 T13019 det the,promoter
R9681 T13017 T13019 compound rat,promoter
R9682 T13018 T13019 compound albumin,promoter
R9683 T13019 T13015 pobj promoter,from
R9684 T13020 T13019 punct (,promoter
R9685 T13021 T13022 compound Fig.,5B
R9686 T13022 T13019 appos 5B,promoter
R9687 T13023 T13019 punct ",",promoter
R9688 T13024 T13025 nmod lanes,8
R9689 T13025 T12992 npadvmod 8,carrying
R9690 T13026 T13025 cc and,8
R9691 T13027 T13025 conj 9,8
R9692 T13028 T12983 punct ),abolished
R9693 T13029 T12983 punct ",",abolished
R9694 T13030 T12983 cc but,abolished
R9695 T13031 T13032 neg not,by
R9696 T13032 T12983 conj by,abolished
R9697 T13033 T13035 det the,oligonucleotide
R9698 T13034 T13035 amod mutated,oligonucleotide
R9699 T13035 T13032 pobj oligonucleotide,by
R9700 T13036 T13038 punct (,5B
R9701 T13037 T13038 compound Fig.,5B
R9702 T13038 T13035 appos 5B,oligonucleotide
R9703 T13039 T13038 punct ",",5B
R9704 T13040 T13035 conj lanes,oligonucleotide
R9705 T13041 T13040 nummod 6,lanes
R9706 T13042 T13041 cc and,6
R9707 T13043 T13041 conj 7,6
R9708 T13044 T12983 punct ),abolished
R9709 T13045 T12973 punct .,detected

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12663 393-394 -RRB- denotes )
T12662 392-393 CD denotes 7
T12661 388-391 CC denotes and
T12660 386-387 CD denotes 6
T12659 380-385 NN denotes lanes
T12658 378-379 -COMMA- denotes ,
T12657 376-378 NN denotes 5B
T12656 371-375 NNP denotes Fig.
T12655 370-371 -LRB- denotes (
T12654 354-369 NN denotes oligonucleotide
T12653 346-353 VB denotes mutated
T12652 342-345 DT denotes the
T12651 339-341 IN denotes by
T12650 335-338 RB denotes not
T12649 331-334 CC denotes but
T12648 329-330 -COMMA- denotes ,
T12647 328-329 -RRB- denotes )
T12646 327-328 CD denotes 9
T12645 323-326 CC denotes and
T12644 321-322 CD denotes 8
T12643 315-320 NN denotes lanes
T12642 313-314 -COMMA- denotes ,
T12641 311-313 NN denotes 5B
T12640 306-310 NNP denotes Fig.
T12639 305-306 -LRB- denotes (
T12638 296-304 NN denotes promoter
T12637 288-295 NN denotes albumin
T12636 284-287 NN denotes rat
T12635 280-283 DT denotes the
T12634 275-279 IN denotes from
T12633 270-274 NN denotes site
T12632 262-269 NN denotes binding
T12631 256-261 NN denotes C/EBP
T12630 250-255 VB denotes known
T12629 248-249 DT denotes a
T12628 245-247 IN denotes of
T12627 236-244 NN denotes sequence
T12626 232-235 DT denotes the
T12625 229-231 CC denotes or
T12624 227-228 -RRB- denotes )
T12623 226-227 CD denotes 5
T12622 222-225 CC denotes and
T12621 220-221 CD denotes 4
T12620 214-219 NN denotes lanes
T12619 212-213 -COMMA- denotes ,
T12618 210-212 NN denotes 5B
T12617 205-209 NNP denotes Fig.
T12616 204-205 -LRB- denotes (
T12615 195-203 NN denotes sequence
T12614 190-194 JJ denotes same
T12613 186-189 DT denotes the
T12612 179-185 CC denotes either
T12611 170-178 VB denotes carrying
T12610 168-169 -COMMA- denotes ,
T12609 153-168 NN denotes oligonucleotide
T12608 137-152 JJ denotes double-stranded
T12607 127-136 JJ denotes unlabeled
T12606 124-126 IN denotes of
T12605 117-123 NN denotes excess
T12604 114-116 DT denotes an
T12603 111-113 IN denotes by
T12602 101-110 VB denotes abolished
T12601 98-100 VB denotes be
T12600 92-97 MD denotes could
T12599 88-91 CC denotes and
T12598 82-87 NN denotes probe
T12597 66-81 NN denotes oligonucleotide
T12596 60-65 NN denotes C/EBP
T12595 53-59 JJ denotes mutant
T12594 49-52 DT denotes the
T12593 43-48 VB denotes using
T12592 34-42 VB denotes detected
T12591 30-33 RB denotes not
T12590 26-29 VB denotes was
T12589 18-25 NN denotes complex
T12588 4-17 JJ denotes LPS-inducible
T12587 0-3 DT denotes The
R9323 T12589 T12587 arg1Of complex,The
R9324 T12589 T12588 arg1Of complex,LPS-inducible
R9325 T12589 T12590 arg1Of complex,was
R9326 T12589 T12592 arg2Of complex,detected
R9327 T12589 T12600 arg1Of complex,could
R9328 T12589 T12601 arg1Of complex,be
R9329 T12589 T12602 arg2Of complex,abolished
R9330 T12589 T12611 arg1Of complex,carrying
R9331 T12592 T12590 arg2Of detected,was
R9332 T12592 T12591 arg1Of detected,not
R9333 T12592 T12593 modOf detected,using
R9334 T12592 T12599 arg1Of detected,and
R9335 T12598 T12593 arg2Of probe,using
R9336 T12598 T12594 arg1Of probe,the
R9337 T12598 T12595 arg1Of probe,mutant
R9338 T12598 T12596 arg1Of probe,C/EBP
R9339 T12598 T12597 arg1Of probe,oligonucleotide
R9340 T12599 T12610 arg1Of and,","
R9341 T12599 T12611 modOf and,carrying
R9342 T12602 T12599 arg2Of abolished,and
R9343 T12602 T12600 arg2Of abolished,could
R9344 T12602 T12601 arg2Of abolished,be
R9345 T12602 T12603 arg1Of abolished,by
R9346 T12605 T12603 arg2Of excess,by
R9347 T12605 T12604 arg1Of excess,an
R9348 T12605 T12606 arg1Of excess,of
R9349 T12609 T12606 arg2Of oligonucleotide,of
R9350 T12609 T12607 arg1Of oligonucleotide,unlabeled
R9351 T12609 T12608 arg1Of oligonucleotide,double-stranded
R9352 T12615 T12612 arg1Of sequence,either
R9353 T12615 T12613 arg1Of sequence,the
R9354 T12615 T12614 arg1Of sequence,same
R9355 T12615 T12616 arg1Of sequence,(
R9356 T12615 T12625 arg1Of sequence,or
R9357 T12618 T12617 arg1Of 5B,Fig.
R9358 T12618 T12619 arg1Of 5B,","
R9359 T12619 T12616 arg2Of ",",(
R9360 T12621 T12622 arg1Of 4,and
R9361 T12622 T12619 arg2Of and,","
R9362 T12622 T12620 arg1Of and,lanes
R9363 T12623 T12622 arg2Of 5,and
R9364 T12624 T12616 arg3Of ),(
R9365 T12625 T12611 arg2Of or,carrying
R9366 T12627 T12625 arg2Of sequence,or
R9367 T12627 T12626 arg1Of sequence,the
R9368 T12627 T12628 arg1Of sequence,of
R9369 T12627 T12651 arg1Of sequence,by
R9370 T12628 T12649 arg1Of of,but
R9371 T12633 T12628 arg2Of site,of
R9372 T12633 T12629 arg1Of site,a
R9373 T12633 T12630 arg2Of site,known
R9374 T12633 T12631 arg1Of site,C/EBP
R9375 T12633 T12632 arg1Of site,binding
R9376 T12633 T12634 arg1Of site,from
R9377 T12633 T12639 arg1Of site,(
R9378 T12638 T12634 arg2Of promoter,from
R9379 T12638 T12635 arg1Of promoter,the
R9380 T12638 T12636 arg1Of promoter,rat
R9381 T12638 T12637 arg1Of promoter,albumin
R9382 T12641 T12640 arg1Of 5B,Fig.
R9383 T12641 T12642 arg1Of 5B,","
R9384 T12642 T12639 arg2Of ",",(
R9385 T12644 T12645 arg1Of 8,and
R9386 T12645 T12642 arg2Of and,","
R9387 T12645 T12643 arg1Of and,lanes
R9388 T12646 T12645 arg2Of 9,and
R9389 T12647 T12639 arg3Of ),(
R9390 T12649 T12648 arg1Of but,","
R9391 T12651 T12649 arg2Of by,but
R9392 T12651 T12650 arg1Of by,not
R9393 T12654 T12651 arg2Of oligonucleotide,by
R9394 T12654 T12652 arg1Of oligonucleotide,the
R9395 T12654 T12653 arg2Of oligonucleotide,mutated
R9396 T12654 T12655 arg1Of oligonucleotide,(
R9397 T12657 T12656 arg1Of 5B,Fig.
R9398 T12657 T12658 arg1Of 5B,","
R9399 T12658 T12655 arg2Of ",",(
R9400 T12660 T12661 arg1Of 6,and
R9401 T12661 T12658 arg2Of and,","
R9402 T12661 T12659 arg1Of and,lanes
R9403 T12662 T12661 arg2Of 7,and
R9404 T12663 T12655 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T12416 288-295 Protein denotes albumin

GO-MF

Id Subject Object Predicate Lexical cue
T12421 262-269 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T12404 0-395 Sentence denotes The LPS-inducible complex was not detected using the mutant C/EBP oligonucleotide probe and could be abolished by an excess of unlabeled double-stranded oligonucleotide, carrying either the same sequence (Fig. 5B, lanes 4 and 5) or the sequence of a known C/EBP binding site from the rat albumin promoter (Fig. 5B, lanes 8 and 9), but not by the mutated oligonucleotide (Fig. 5B, lanes 6 and 7).
T176 0-395 Sentence denotes The LPS-inducible complex was not detected using the mutant C/EBP oligonucleotide probe and could be abolished by an excess of unlabeled double-stranded oligonucleotide, carrying either the same sequence (Fig. 5B, lanes 4 and 5) or the sequence of a known C/EBP binding site from the rat albumin promoter (Fig. 5B, lanes 8 and 9), but not by the mutated oligonucleotide (Fig. 5B, lanes 6 and 7).

simple1

Id Subject Object Predicate Lexical cue
T12431 288-295 Protein denotes albumin

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T12697 288-295 Protein denotes albumin

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T12717 288-295 Protein denotes albumin

DLUT931

Id Subject Object Predicate Lexical cue
T12706 288-295 Protein denotes albumin

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12798 245-304 Binding denotes of a known C/EBP binding site from the rat albumin promoter
T12792 60-65 Protein denotes C/EBP
T12782 153-169 Entity denotes oligonucleotide,
T12780 245-304 Entity denotes of a known C/EBP binding site from the rat albumin promoter
T12778 288-295 Protein denotes albumin
T12775 342-369 Entity denotes the mutated oligonucleotide
T12767 0-25 Entity denotes The LPS-inducible complex
T12764 280-304 Entity denotes the rat albumin promoter
T12759 256-261 Protein denotes C/EBP
R9459 T12764 T12778 partOf the rat albumin promoter,albumin
R9462 T12780 T12798 themeOf of a known C/EBP binding site from the rat albumin promoter,of a known C/EBP binding site from the rat albumin promoter

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T12735 306-309 Protein denotes Fig
T12734 284-304 Protein denotes rat albumin promoter
T12733 256-274 Protein denotes C/EBP binding site
T12732 53-81 Protein denotes mutant C/EBP oligonucleotide

testone

Id Subject Object Predicate Lexical cue
T12387 262-269 Entity denotes binding
T12382 288-295 Protein denotes albumin

test3

Id Subject Object Predicate Lexical cue
T12397 288-295 Protein denotes albumin
T12391 288-295 Protein denotes albumin