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PMC:3589482 / 26774-26990 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12297 44-45 CD denotes −
T12296 41-43 IN denotes at
T12295 37-40 NNP denotes CRE
T12294 33-36 DT denotes the
T12293 30-32 IN denotes of
T12292 21-29 NN denotes mutation
T12291 19-20 , denotes ,
T12290 17-19 NNP denotes 4B
T12289 12-16 NNP denotes Fig.
T12288 9-11 IN denotes in
T12287 3-8 VBN denotes shown
T12286 0-2 IN denotes As
T12334 215-216 . denotes .
T12333 207-215 NN denotes promoter
T12332 198-206 NNP denotes SerpinB2
T12331 191-197 NN denotes murine
T12330 187-190 DT denotes the
T12329 182-186 IN denotes from
T12328 173-181 NN denotes activity
T12327 162-172 NN denotes luciferase
T12326 148-161 JJ denotes LPS-inducible
T12325 140-147 VBN denotes reduced
T12324 126-139 RB denotes significantly
T12323 123-125 CC denotes or
T12322 112-122 RB denotes completely
T12321 110-111 , denotes ,
T12320 108-110 CD denotes 88
T12319 107-108 NN denotes −
T12318 106-107 NN denotes /
T12317 104-106 CD denotes 94
T12316 103-104 CD denotes −
T12315 99-102 CC denotes and
T12314 95-98 CD denotes 100
T12313 94-95 NN denotes −
T12312 93-94 NN denotes /
T12311 90-93 CD denotes 106
T12310 89-90 CD denotes −
T12309 86-88 IN denotes at
T12308 80-85 NNS denotes sites
T12307 75-79 JJ denotes AP-1
T12306 71-74 CD denotes two
T12305 67-70 DT denotes the
T12304 64-66 IN denotes of
T12303 57-63 DT denotes either
T12302 54-56 CC denotes or
T12301 50-53 CD denotes 172
T12300 49-50 NN denotes −
T12299 48-49 NN denotes /
T12298 45-48 CD denotes 177
R9086 T12286 T12287 mark As,shown
R9087 T12287 T12325 advcl shown,reduced
R9088 T12288 T12287 prep in,shown
R9089 T12289 T12290 compound Fig.,4B
R9090 T12290 T12288 pobj 4B,in
R9091 T12291 T12290 punct ",",4B
R9092 T12292 T12290 appos mutation,4B
R9093 T12293 T12292 prep of,mutation
R9094 T12294 T12295 det the,CRE
R9095 T12295 T12293 pobj CRE,of
R9096 T12296 T12292 prep at,mutation
R9097 T12297 T12301 nummod −,172
R9098 T12298 T12300 nummod 177,−
R9099 T12299 T12300 compound /,−
R9100 T12300 T12301 nummod −,172
R9101 T12301 T12296 pobj 172,at
R9102 T12302 T12301 cc or,172
R9103 T12303 T12301 conj either,172
R9104 T12304 T12303 prep of,either
R9105 T12305 T12308 det the,sites
R9106 T12306 T12308 nummod two,sites
R9107 T12307 T12308 amod AP-1,sites
R9108 T12308 T12304 pobj sites,of
R9109 T12309 T12303 prep at,either
R9110 T12310 T12325 punct −,reduced
R9111 T12311 T12313 nummod 106,−
R9112 T12312 T12313 compound /,−
R9113 T12313 T12325 nsubj −,reduced
R9114 T12314 T12313 nummod 100,−
R9115 T12315 T12313 cc and,−
R9116 T12316 T12319 meta −,−
R9117 T12317 T12319 nummod 94,−
R9118 T12318 T12319 compound /,−
R9119 T12319 T12313 conj −,−
R9120 T12320 T12319 nummod 88,−
R9121 T12321 T12319 punct ",",−
R9122 T12322 T12325 advmod completely,reduced
R9123 T12323 T12322 cc or,completely
R9124 T12324 T12322 conj significantly,completely
R9125 T12325 T12325 ROOT reduced,reduced
R9126 T12326 T12328 amod LPS-inducible,activity
R9127 T12327 T12328 compound luciferase,activity
R9128 T12328 T12325 dobj activity,reduced
R9129 T12329 T12325 prep from,reduced
R9130 T12330 T12333 det the,promoter
R9131 T12331 T12333 compound murine,promoter
R9132 T12332 T12333 compound SerpinB2,promoter
R9133 T12333 T12329 pobj promoter,from
R9134 T12334 T12325 punct .,reduced

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11815 207-215 NN denotes promoter
T11814 198-206 NN denotes SerpinB2
T11813 191-197 JJ denotes murine
T11812 187-190 DT denotes the
T11811 182-186 IN denotes from
T11810 173-181 NN denotes activity
T11809 162-172 NN denotes luciferase
T11808 148-161 JJ denotes LPS-inducible
T11807 140-147 VB denotes reduced
T11806 126-139 RB denotes significantly
T11805 123-125 CC denotes or
T11804 112-122 RB denotes completely
T11803 110-111 -COMMA- denotes ,
T11802 103-110 CD denotes −94/−88
T11801 99-102 CC denotes and
T11800 89-98 CD denotes −106/−100
T11799 86-88 IN denotes at
T11798 80-85 NN denotes sites
T11797 75-79 NN denotes AP-1
T11796 71-74 CD denotes two
T11795 67-70 DT denotes the
T11794 64-66 IN denotes of
T11793 57-63 DT denotes either
T11792 54-56 CC denotes or
T11791 44-53 CD denotes −177/−172
T11790 41-43 IN denotes at
T11789 37-40 NN denotes CRE
T11788 33-36 DT denotes the
T11787 30-32 IN denotes of
T11786 21-29 NN denotes mutation
T11785 19-20 -COMMA- denotes ,
T11784 17-19 NN denotes 4B
T11783 12-16 NNP denotes Fig.
T11782 9-11 IN denotes in
T11781 3-8 VB denotes shown
T11780 0-2 IN denotes As
R8729 T11781 T11780 arg2Of shown,As
R8730 T11781 T11782 arg1Of shown,in
R8731 T11784 T11782 arg2Of 4B,in
R8732 T11784 T11783 arg1Of 4B,Fig.
R8733 T11786 T11787 arg1Of mutation,of
R8734 T11786 T11790 arg1Of mutation,at
R8735 T11786 T11803 arg1Of mutation,","
R8736 T11786 T11807 arg1Of mutation,reduced
R8737 T11789 T11787 arg2Of CRE,of
R8738 T11789 T11788 arg1Of CRE,the
R8739 T11793 T11790 arg2Of either,at
R8740 T11793 T11791 arg1Of either,−177/−172
R8741 T11793 T11792 arg1Of either,or
R8742 T11793 T11794 arg1Of either,of
R8743 T11798 T11794 arg2Of sites,of
R8744 T11798 T11795 arg1Of sites,the
R8745 T11798 T11796 arg1Of sites,two
R8746 T11798 T11797 arg1Of sites,AP-1
R8747 T11798 T11799 arg1Of sites,at
R8748 T11800 T11801 arg1Of −106/−100,and
R8749 T11801 T11799 arg2Of and,at
R8750 T11802 T11801 arg2Of −94/−88,and
R8751 T11804 T11805 arg1Of completely,or
R8752 T11806 T11805 arg2Of significantly,or
R8753 T11807 T11780 arg1Of reduced,As
R8754 T11807 T11785 arg1Of reduced,","
R8755 T11807 T11804 arg1Of reduced,completely
R8756 T11807 T11806 arg1Of reduced,significantly
R8757 T11810 T11807 arg2Of activity,reduced
R8758 T11810 T11808 arg1Of activity,LPS-inducible
R8759 T11810 T11809 arg1Of activity,luciferase
R8760 T11810 T11811 arg1Of activity,from
R8761 T11815 T11811 arg2Of promoter,from
R8762 T11815 T11812 arg1Of promoter,the
R8763 T11815 T11813 arg1Of promoter,murine
R8764 T11815 T11814 arg1Of promoter,SerpinB2

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11529 198-206 Protein denotes SerpinB2
T11528 162-172 Protein denotes luciferase

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11887 162-172 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T11884 198-206 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T11876 75-79 http://www.uniprot.org/uniprot/P05412 denotes AP-1

GO-BP

Id Subject Object Predicate Lexical cue
T11542 162-181 http://purl.obolibrary.org/obo/GO_0050397 denotes luciferase activity
T11541 162-181 http://purl.obolibrary.org/obo/GO_0050248 denotes luciferase activity
T11540 162-181 http://purl.obolibrary.org/obo/GO_0047712 denotes luciferase activity
T11539 162-181 http://purl.obolibrary.org/obo/GO_0047077 denotes luciferase activity
T11538 162-181 http://purl.obolibrary.org/obo/GO_0045289 denotes luciferase activity

GO-MF

Id Subject Object Predicate Lexical cue
T11553 162-181 http://purl.obolibrary.org/obo/GO_0050397 denotes luciferase activity
T11552 162-181 http://purl.obolibrary.org/obo/GO_0050248 denotes luciferase activity
T11551 162-181 http://purl.obolibrary.org/obo/GO_0047712 denotes luciferase activity
T11550 162-181 http://purl.obolibrary.org/obo/GO_0047077 denotes luciferase activity
T11549 162-181 http://purl.obolibrary.org/obo/GO_0045289 denotes luciferase activity

sentences

Id Subject Object Predicate Lexical cue
T11449 0-216 Sentence denotes As shown in Fig. 4B, mutation of the CRE at −177/−172 or either of the two AP-1 sites at −106/−100 and −94/−88, completely or significantly reduced LPS-inducible luciferase activity from the murine SerpinB2 promoter.
T169 0-216 Sentence denotes As shown in Fig. 4B, mutation of the CRE at −177/−172 or either of the two AP-1 sites at −106/−100 and −94/−88, completely or significantly reduced LPS-inducible luciferase activity from the murine SerpinB2 promoter.

simple1

Id Subject Object Predicate Lexical cue
T11562 198-206 Protein denotes SerpinB2
T11561 162-172 Protein denotes luciferase

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T11870 140-147 Negative_regulation denotes reduced
T11869 148-161 Positive_regulation denotes LPS-inducible
T11862 198-206 Protein denotes SerpinB2
T11861 162-172 Protein denotes luciferase
R8798 T11861 T11870 themeOf luciferase,reduced
R8799 T11861 T11869 themeOf luciferase,LPS-inducible
R8800 T11862 T11870 themeOf SerpinB2,reduced
R8803 T11869 T11870 themeOf LPS-inducible,reduced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11930 140-147 Negative_regulation denotes reduced
T11926 198-206 Protein denotes SerpinB2
T11925 162-172 Protein denotes luciferase
R8818 T11925 T11930 themeOf luciferase,reduced

DLUT931

Id Subject Object Predicate Lexical cue
T11917 148-161 Positive_regulation denotes LPS-inducible
T11916 140-147 Negative_regulation denotes reduced
T11911 198-206 Protein denotes SerpinB2
T11910 162-172 Protein denotes luciferase
R8811 T11910 T11916 themeOf luciferase,reduced
R8812 T11910 T11917 themeOf luciferase,LPS-inducible
R8813 T11911 T11916 themeOf SerpinB2,reduced
R8815 T11917 T11916 themeOf LPS-inducible,reduced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12037 162-172 Protein denotes luciferase
T12033 75-79 Protein denotes AP-1
T12020 187-215 Entity denotes the murine SerpinB2 promoter
T12019 198-206 Protein denotes SerpinB2
T12015 57-98 Entity denotes either of the two AP-1 sites at −106/−100
T12004 30-40 Protein denotes of the CRE
T11988 64-98 Entity denotes of the two AP-1 sites at −106/−100
T11985 12-15 Protein denotes Fig

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11952 140-147 Negative_regulation denotes reduced
T11951 152-161 Positive_regulation denotes inducible
T11950 191-215 Protein denotes murine SerpinB2 promoter
T11949 162-172 Protein denotes luciferase
T11948 148-151 Protein denotes LPS
T11947 75-85 Protein denotes AP-1 sites
T11946 12-15 Protein denotes Fig
R8823 T11948 T11951 causeOf LPS,inducible
R8824 T11949 T11951 themeOf luciferase,inducible
R8825 T11951 T11952 themeOf inducible,reduced

testone

Id Subject Object Predicate Lexical cue
T11416 152-161 Positive_regulation denotes inducible
T11415 140-147 Negative_regulation denotes reduced
T11410 198-206 Protein denotes SerpinB2
T11409 162-172 Protein denotes luciferase
R8429 T11409 T11416 themeOf luciferase,inducible
R8430 T11416 T11415 themeOf inducible,reduced

test3

Id Subject Object Predicate Lexical cue
T11441 198-206 Protein denotes SerpinB2
T11440 162-172 Protein denotes luciferase
T11439 152-161 Positive_regulation denotes inducible
T11438 140-147 Negative_regulation denotes reduced
T11425 198-206 Protein denotes SerpinB2
T11424 162-172 Protein denotes luciferase
R8434 T11439 T11438 themeOf inducible,reduced
R8435 T11440 T11439 themeOf luciferase,inducible