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PMC:3589482 / 21649-21919 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23359 269-270 . denotes .
T23358 265-269 NN denotes site
T23357 254-264 NN denotes initiation
T23356 240-253 NN denotes transcription
T23355 238-239 SYM denotes =
T23354 234-237 FW denotes tis
T23353 232-233 , denotes ,
T23352 226-232 NN denotes repeat
T23351 210-225 NN denotes tetranucleotide
T23350 205-209 NNP denotes TATG
T23349 203-204 SYM denotes =
T23348 201-202 VBP denotes n
T23347 200-201 -RRB- denotes )
T23346 196-200 NNP denotes TATG
T23345 195-196 -LRB- denotes (
T23344 193-194 , denotes ,
T23343 192-193 -RRB- denotes )
T23342 189-192 NNP denotes LTR
T23341 188-189 -LRB- denotes (
T23340 181-187 NN denotes repeat
T23339 172-180 NN denotes terminal
T23338 167-171 JJ denotes long
T23337 161-166 CD denotes MLT1L
T23336 159-160 SYM denotes =
T23335 153-158 NNP denotes MLT1L
T23334 151-152 , denotes ,
T23333 147-151 NNP denotes SINE
T23332 143-146 NNP denotes MIR
T23331 141-142 SYM denotes =
T23330 137-140 NNP denotes MIR
T23329 135-136 , denotes ,
T23328 131-135 NNP denotes LINE
T23327 128-130 CD denotes L2
T23326 125-126 SYM denotes =
T23325 122-124 NNP denotes L2
T23324 120-121 , denotes ,
T23323 119-120 -RRB- denotes )
T23322 115-119 NNP denotes LINE
T23321 114-115 -LRB- denotes (
T23320 106-113 NN denotes element
T23319 98-105 JJ denotes nuclear
T23318 85-97 VBN denotes interspersed
T23317 80-84 JJ denotes long
T23316 77-79 CD denotes L1
T23315 74-75 SYM denotes =
T23314 71-73 NNP denotes L1
T23313 69-70 , denotes ,
T23312 68-69 -RRB- denotes )
T23311 64-68 NNP denotes SINE
T23310 63-64 -LRB- denotes (
T23309 56-62 NN denotes repeat
T23308 48-55 JJ denotes nuclear
T23307 35-47 VBN denotes interspersed
T23306 29-34 JJ denotes short
T23305 25-28 CD denotes ID4
T23304 22-23 SYM denotes =
T23303 18-21 NNP denotes ID4
T23302 16-17 , denotes ,
T23301 10-16 NN denotes repeat
T23300 6-9 NNP denotes Alu
T23299 4-5 SYM denotes =
T23298 0-3 NNP denotes Alu
R16797 T23298 T23301 compound Alu,repeat
R16798 T23299 T23300 punct =,Alu
R16799 T23300 T23301 compound Alu,repeat
R16800 T23301 T23301 ROOT repeat,repeat
R16801 T23302 T23301 punct ",",repeat
R16802 T23303 T23305 quantmod ID4,ID4
R16803 T23304 T23305 punct =,ID4
R16804 T23305 T23309 nummod ID4,repeat
R16805 T23306 T23307 advmod short,interspersed
R16806 T23307 T23309 amod interspersed,repeat
R16807 T23308 T23309 amod nuclear,repeat
R16808 T23309 T23301 appos repeat,repeat
R16809 T23310 T23309 punct (,repeat
R16810 T23311 T23309 appos SINE,repeat
R16811 T23312 T23309 punct ),repeat
R16812 T23313 T23309 punct ",",repeat
R16813 T23314 T23320 nmod L1,element
R16814 T23315 T23316 punct =,L1
R16815 T23316 T23320 nummod L1,element
R16816 T23317 T23318 advmod long,interspersed
R16817 T23318 T23320 amod interspersed,element
R16818 T23319 T23320 amod nuclear,element
R16819 T23320 T23301 appos element,repeat
R16820 T23321 T23322 punct (,LINE
R16821 T23322 T23320 appos LINE,element
R16822 T23323 T23322 punct ),LINE
R16823 T23324 T23320 punct ",",element
R16824 T23325 T23328 compound L2,LINE
R16825 T23326 T23327 punct =,L2
R16826 T23327 T23328 compound L2,LINE
R16827 T23328 T23320 appos LINE,element
R16828 T23329 T23328 punct ",",LINE
R16829 T23330 T23333 compound MIR,SINE
R16830 T23331 T23330 punct =,MIR
R16831 T23332 T23333 compound MIR,SINE
R16832 T23333 T23328 appos SINE,LINE
R16833 T23334 T23333 punct ",",SINE
R16834 T23335 T23340 nmod MLT1L,repeat
R16835 T23336 T23337 punct =,MLT1L
R16836 T23337 T23340 nummod MLT1L,repeat
R16837 T23338 T23339 amod long,terminal
R16838 T23339 T23340 compound terminal,repeat
R16839 T23340 T23333 appos repeat,SINE
R16840 T23341 T23342 punct (,LTR
R16841 T23342 T23340 appos LTR,repeat
R16842 T23343 T23342 punct ),LTR
R16843 T23344 T23333 punct ",",SINE
R16844 T23345 T23346 punct (,TATG
R16845 T23346 T23333 appos TATG,SINE
R16846 T23347 T23333 punct ),SINE
R16847 T23348 T23352 nmod n,repeat
R16848 T23349 T23352 punct =,repeat
R16849 T23350 T23352 compound TATG,repeat
R16850 T23351 T23352 compound tetranucleotide,repeat
R16851 T23352 T23358 nmod repeat,site
R16852 T23353 T23352 punct ",",repeat
R16853 T23354 T23358 compound tis,site
R16854 T23355 T23356 punct =,transcription
R16855 T23356 T23357 compound transcription,initiation
R16856 T23357 T23358 compound initiation,site
R16857 T23358 T23301 appos site,repeat
R16858 T23359 T23301 punct .,repeat

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22960 265-269 NN denotes site
T22959 254-264 NN denotes initiation
T22958 234-253 NN denotes tis = transcription
T22957 232-233 -COMMA- denotes ,
T22956 226-232 NN denotes repeat
T22955 210-225 NN denotes tetranucleotide
T22954 201-209 NN denotes n = TATG
T22953 200-201 -RRB- denotes )
T22952 196-200 NN denotes TATG
T22951 195-196 -LRB- denotes (
T22950 193-194 -COMMA- denotes ,
T22949 192-193 -RRB- denotes )
T22948 189-192 NN denotes LTR
T22947 188-189 -LRB- denotes (
T22946 181-187 NN denotes repeat
T22945 172-180 JJ denotes terminal
T22944 167-171 JJ denotes long
T22943 153-166 NN denotes MLT1L = MLT1L
T22942 151-152 -COMMA- denotes ,
T22941 147-151 NNP denotes SINE
T22940 137-146 NNP denotes MIR = MIR
T22939 135-136 -COMMA- denotes ,
T22938 131-135 NNP denotes LINE
T22937 128-130 NNP denotes L2
T22936 122-127 NN denotes L2 = 
T22935 120-121 -COMMA- denotes ,
T22934 119-120 -RRB- denotes )
T22933 115-119 NN denotes LINE
T22932 114-115 -LRB- denotes (
T22931 106-113 NN denotes element
T22930 98-105 JJ denotes nuclear
T22929 85-97 JJ denotes interspersed
T22928 80-84 JJ denotes long
T22927 77-79 NN denotes L1
T22926 71-76 NN denotes L1 = 
T22925 69-70 -COMMA- denotes ,
T22924 68-69 -RRB- denotes )
T22923 64-68 NN denotes SINE
T22922 63-64 -LRB- denotes (
T22921 56-62 NN denotes repeat
T22920 48-55 JJ denotes nuclear
T22919 35-47 JJ denotes interspersed
T22918 29-34 JJ denotes short
T22917 25-28 NN denotes ID4
T22916 18-24 NN denotes ID4 = 
T22915 16-17 -COMMA- denotes ,
T22914 10-16 NN denotes repeat
T22913 0-9 NN denotes Alu = Alu
R16533 T22914 T22913 arg1Of repeat,Alu = Alu
R16534 T22914 T22915 arg1Of repeat,","
R16535 T22915 T22925 arg1Of ",",","
R16536 T22921 T22915 arg2Of repeat,","
R16537 T22921 T22916 arg1Of repeat,ID4 = 
R16538 T22921 T22917 arg1Of repeat,ID4
R16539 T22921 T22918 arg1Of repeat,short
R16540 T22921 T22919 arg1Of repeat,interspersed
R16541 T22921 T22920 arg1Of repeat,nuclear
R16542 T22921 T22922 arg1Of repeat,(
R16543 T22923 T22922 arg2Of SINE,(
R16544 T22924 T22922 arg3Of ),(
R16545 T22925 T22935 arg1Of ",",","
R16546 T22929 T22926 arg1Of interspersed,L1 = 
R16547 T22929 T22927 arg1Of interspersed,L1
R16548 T22929 T22928 arg1Of interspersed,long
R16549 T22931 T22925 arg2Of element,","
R16550 T22931 T22929 arg1Of element,interspersed
R16551 T22931 T22930 arg1Of element,nuclear
R16552 T22931 T22932 arg1Of element,(
R16553 T22933 T22932 arg2Of LINE,(
R16554 T22934 T22932 arg3Of ),(
R16555 T22938 T22935 arg2Of LINE,","
R16556 T22938 T22936 arg1Of LINE,L2 = 
R16557 T22938 T22937 arg1Of LINE,L2
R16558 T22938 T22939 arg1Of LINE,","
R16559 T22941 T22940 arg1Of SINE,MIR = MIR
R16560 T22941 T22942 arg1Of SINE,","
R16561 T22941 T22950 arg1Of SINE,","
R16562 T22946 T22942 arg2Of repeat,","
R16563 T22946 T22943 arg1Of repeat,MLT1L = MLT1L
R16564 T22946 T22944 arg1Of repeat,long
R16565 T22946 T22945 arg1Of repeat,terminal
R16566 T22946 T22947 arg1Of repeat,(
R16567 T22948 T22947 arg2Of LTR,(
R16568 T22949 T22947 arg3Of ),(
R16569 T22950 T22939 arg2Of ",",","
R16570 T22950 T22957 arg1Of ",",","
R16571 T22952 T22951 arg2Of TATG,(
R16572 T22953 T22951 arg3Of ),(
R16573 T22956 T22950 arg2Of repeat,","
R16574 T22956 T22951 arg1Of repeat,(
R16575 T22956 T22954 arg1Of repeat,n = TATG
R16576 T22956 T22955 arg1Of repeat,tetranucleotide
R16577 T22960 T22957 arg2Of site,","
R16578 T22960 T22958 arg1Of site,tis = transcription
R16579 T22960 T22959 arg1Of site,initiation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22988 25-28 http://www.uniprot.org/uniprot/P47928 denotes ID4
T22987 18-21 http://www.uniprot.org/uniprot/P47928 denotes ID4

GO-BP

Id Subject Object Predicate Lexical cue
T22719 240-253 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T22699 0-270 Sentence denotes Alu = Alu repeat, ID4 =  ID4 short interspersed nuclear repeat (SINE), L1 =  L1 long interspersed nuclear element (LINE), L2 =  L2 LINE, MIR = MIR SINE, MLT1L = MLT1L long terminal repeat (LTR), (TATG)n = TATG tetranucleotide repeat, tis = transcription initiation site.
T139 0-270 Sentence denotes Alu = Alu repeat, ID4 =  ID4 short interspersed nuclear repeat (SINE), L1 =  L1 long interspersed nuclear element (LINE), L2 =  L2 LINE, MIR = MIR SINE, MLT1L = MLT1L long terminal repeat (LTR), (TATG)n = TATG tetranucleotide repeat, tis = transcription initiation site.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23057 137-141 Protein denotes MIR 
T23054 18-22 Protein denotes ID4 
T23053 201-203 Entity denotes n 
T23092 210-215 Entity denotes tetra
T23090 71-79 Protein denotes L1 =  L1
T23089 122-125 Entity denotes L2 
T23085 128-130 Entity denotes L2
T23079 71-74 Protein denotes L1 
T23078 18-34 Protein denotes ID4 =  ID4 short
T23077 143-146 Protein denotes MIR
T23072 234-238 Entity denotes tis 
T23067 210-225 Entity denotes tetranucleotide

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23033 22-23 Positive_regulation denotes =
T23032 22-23 Positive_regulation denotes =
T23031 29-62 Protein denotes short interspersed nuclear repeat
T23030 153-187 Protein denotes MLT1L = MLT1L long terminal repeat
T23029 147-151 Protein denotes SINE
T23028 77-79 Protein denotes L1
T23027 71-73 Protein denotes L1
T23026 25-28 Protein denotes ID4
T23025 18-21 Protein denotes ID4
T23024 0-3 Protein denotes Alu
R16584 T23030 T23032 themeOf MLT1L = MLT1L long terminal repeat,=
R16585 T23031 T23033 themeOf short interspersed nuclear repeat,=