PMC:3589482 / 20823-21063 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T23198","span":{"begin":239,"end":240},"obj":"."},{"id":"T23197","span":{"begin":231,"end":239},"obj":"NNS"},{"id":"T23196","span":{"begin":223,"end":230},"obj":"NN"},{"id":"T23195","span":{"begin":219,"end":222},"obj":"CC"},{"id":"T23194","span":{"begin":208,"end":218},"obj":"NNS"},{"id":"T23193","span":{"begin":199,"end":207},"obj":"NN"},{"id":"T23192","span":{"begin":179,"end":198},"obj":"JJ"},{"id":"T23191","span":{"begin":170,"end":178},"obj":"NNP"},{"id":"T23190","span":{"begin":163,"end":169},"obj":"NN"},{"id":"T23189","span":{"begin":153,"end":162},"obj":"VBN"},{"id":"T23188","span":{"begin":149,"end":152},"obj":"DT"},{"id":"T23187","span":{"begin":144,"end":148},"obj":"IN"},{"id":"T23186","span":{"begin":132,"end":143},"obj":"VBN"},{"id":"T23185","span":{"begin":120,"end":131},"obj":"RB"},{"id":"T23184","span":{"begin":115,"end":119},"obj":"VBD"},{"id":"T23183","span":{"begin":103,"end":114},"obj":"NNS"},{"id":"T23182","span":{"begin":97,"end":102},"obj":"CD"},{"id":"T23181","span":{"begin":93,"end":96},"obj":"NNP"},{"id":"T23180","span":{"begin":91,"end":92},"obj":"-RRB-"},{"id":"T23179","span":{"begin":90,"end":91},"obj":"NNP"},{"id":"T23178","span":{"begin":89,"end":90},"obj":"-LRB-"},{"id":"T23177","span":{"begin":87,"end":88},"obj":"."},{"id":"T23176","span":{"begin":79,"end":87},"obj":"NN"},{"id":"T23175","span":{"begin":70,"end":78},"obj":"NN"},{"id":"T23174","span":{"begin":68,"end":69},"obj":"NN"},{"id":"T23173","span":{"begin":67,"end":68},"obj":"CD"},{"id":"T23172","span":{"begin":58,"end":66},"obj":"CD"},{"id":"T23171","span":{"begin":51,"end":57},"obj":"NN"},{"id":"T23170","span":{"begin":48,"end":50},"obj":"IN"},{"id":"T23169","span":{"begin":37,"end":47},"obj":"NN"},{"id":"T23168","span":{"begin":35,"end":36},"obj":"NN"},{"id":"T23167","span":{"begin":34,"end":35},"obj":"CD"},{"id":"T23166","span":{"begin":29,"end":33},"obj":"RBS"},{"id":"T23165","span":{"begin":25,"end":28},"obj":"DT"},{"id":"T23164","span":{"begin":16,"end":24},"obj":"VBP"},{"id":"T23163","span":{"begin":10,"end":15},"obj":"NNS"},{"id":"T23162","span":{"begin":0,"end":9},"obj":"VB"}],"relations":[{"id":"R16661","pred":"amod","subj":"T23162","obj":"T23163"},{"id":"R16662","pred":"nsubj","subj":"T23163","obj":"T23164"},{"id":"R16663","pred":"ROOT","subj":"T23164","obj":"T23164"},{"id":"R16664","pred":"det","subj":"T23165","obj":"T23169"},{"id":"R16665","pred":"advmod","subj":"T23166","obj":"T23167"},{"id":"R16666","pred":"nummod","subj":"T23167","obj":"T23168"},{"id":"R16667","pred":"compound","subj":"T23168","obj":"T23169"},{"id":"R16668","pred":"dobj","subj":"T23169","obj":"T23164"},{"id":"R16669","pred":"prep","subj":"T23170","obj":"T23169"},{"id":"R16670","pred":"nmod","subj":"T23171","obj":"T23176"},{"id":"R16671","pred":"nummod","subj":"T23172","obj":"T23171"},{"id":"R16672","pred":"nummod","subj":"T23173","obj":"T23174"},{"id":"R16673","pred":"compound","subj":"T23174","obj":"T23176"},{"id":"R16674","pred":"compound","subj":"T23175","obj":"T23176"},{"id":"R16675","pred":"pobj","subj":"T23176","obj":"T23170"},{"id":"R16676","pred":"punct","subj":"T23177","obj":"T23164"},{"id":"R16677","pred":"punct","subj":"T23178","obj":"T23181"},{"id":"R16678","pred":"nmod","subj":"T23179","obj":"T23181"},{"id":"R16679","pred":"punct","subj":"T23180","obj":"T23181"},{"id":"R16680","pred":"intj","subj":"T23181","obj":"T23186"},{"id":"R16681","pred":"nummod","subj":"T23182","obj":"T23181"},{"id":"R16682","pred":"nsubjpass","subj":"T23183","obj":"T23186"},{"id":"R16683","pred":"auxpass","subj":"T23184","obj":"T23186"},{"id":"R16684","pred":"advmod","subj":"T23185","obj":"T23186"},{"id":"R16685","pred":"ROOT","subj":"T23186","obj":"T23186"},{"id":"R16686","pred":"prep","subj":"T23187","obj":"T23186"},{"id":"R16687","pred":"det","subj":"T23188","obj":"T23194"},{"id":"R16688","pred":"amod","subj":"T23189","obj":"T23190"},{"id":"R16689","pred":"compound","subj":"T23190","obj":"T23194"},{"id":"R16690","pred":"nmod","subj":"T23191","obj":"T23193"},{"id":"R16691","pred":"amod","subj":"T23192","obj":"T23193"},{"id":"R16692","pred":"compound","subj":"T23193","obj":"T23194"},{"id":"R16693","pred":"pobj","subj":"T23194","obj":"T23187"},{"id":"R16694","pred":"cc","subj":"T23195","obj":"T23194"},{"id":"R16695","pred":"compound","subj":"T23196","obj":"T23197"},{"id":"R16696","pred":"conj","subj":"T23197","obj":"T23194"},{"id":"R16697","pred":"punct","subj":"T23198","obj":"T23186"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T22822","span":{"begin":231,"end":239},"obj":"NN"},{"id":"T22821","span":{"begin":223,"end":230},"obj":"NN"},{"id":"T22820","span":{"begin":219,"end":222},"obj":"CC"},{"id":"T22819","span":{"begin":208,"end":218},"obj":"NN"},{"id":"T22818","span":{"begin":199,"end":207},"obj":"NN"},{"id":"T22817","span":{"begin":179,"end":198},"obj":"NN"},{"id":"T22816","span":{"begin":170,"end":178},"obj":"NN"},{"id":"T22815","span":{"begin":163,"end":169},"obj":"JJ"},{"id":"T22814","span":{"begin":153,"end":162},"obj":"VB"},{"id":"T22813","span":{"begin":149,"end":152},"obj":"DT"},{"id":"T22812","span":{"begin":144,"end":148},"obj":"IN"},{"id":"T22811","span":{"begin":132,"end":143},"obj":"VB"},{"id":"T22810","span":{"begin":120,"end":131},"obj":"RB"},{"id":"T22809","span":{"begin":115,"end":119},"obj":"VB"},{"id":"T22808","span":{"begin":103,"end":114},"obj":"NN"},{"id":"T22807","span":{"begin":97,"end":102},"obj":"CD"},{"id":"T22806","span":{"begin":93,"end":96},"obj":"NN"},{"id":"T22805","span":{"begin":91,"end":92},"obj":"-RRB-"},{"id":"T22804","span":{"begin":90,"end":91},"obj":"NN"},{"id":"T22803","span":{"begin":89,"end":90},"obj":"-LRB-"},{"id":"T22802","span":{"begin":79,"end":88},"obj":"NN"},{"id":"T22801","span":{"begin":70,"end":78},"obj":"NN"},{"id":"T22800","span":{"begin":67,"end":69},"obj":"NN"},{"id":"T22799","span":{"begin":58,"end":66},"obj":"NN"},{"id":"T22798","span":{"begin":51,"end":57},"obj":"JJ"},{"id":"T22797","span":{"begin":48,"end":50},"obj":"IN"},{"id":"T22796","span":{"begin":37,"end":47},"obj":"NN"},{"id":"T22795","span":{"begin":34,"end":36},"obj":"JJ"},{"id":"T22794","span":{"begin":29,"end":33},"obj":"RB"},{"id":"T22793","span":{"begin":25,"end":28},"obj":"DT"},{"id":"T22792","span":{"begin":16,"end":24},"obj":"VB"},{"id":"T22791","span":{"begin":10,"end":15},"obj":"NN"},{"id":"T22790","span":{"begin":0,"end":9},"obj":"NN"}],"relations":[{"id":"R16410","pred":"arg1Of","subj":"T22791","obj":"T22790"},{"id":"R16411","pred":"arg1Of","subj":"T22791","obj":"T22792"},{"id":"R16412","pred":"arg1Of","subj":"T22795","obj":"T22794"},{"id":"R16413","pred":"arg1Of","subj":"T22796","obj":"T22793"},{"id":"R16414","pred":"arg1Of","subj":"T22796","obj":"T22795"},{"id":"R16415","pred":"arg1Of","subj":"T22796","obj":"T22797"},{"id":"R16416","pred":"arg1Of","subj":"T22796","obj":"T22809"},{"id":"R16417","pred":"arg2Of","subj":"T22796","obj":"T22811"},{"id":"R16418","pred":"arg2Of","subj":"T22804","obj":"T22803"},{"id":"R16419","pred":"arg3Of","subj":"T22805","obj":"T22803"},{"id":"R16420","pred":"arg2Of","subj":"T22808","obj":"T22797"},{"id":"R16421","pred":"arg1Of","subj":"T22808","obj":"T22798"},{"id":"R16422","pred":"arg1Of","subj":"T22808","obj":"T22799"},{"id":"R16423","pred":"arg1Of","subj":"T22808","obj":"T22800"},{"id":"R16424","pred":"arg1Of","subj":"T22808","obj":"T22801"},{"id":"R16425","pred":"arg1Of","subj":"T22808","obj":"T22802"},{"id":"R16426","pred":"arg1Of","subj":"T22808","obj":"T22803"},{"id":"R16427","pred":"arg1Of","subj":"T22808","obj":"T22806"},{"id":"R16428","pred":"arg1Of","subj":"T22808","obj":"T22807"},{"id":"R16429","pred":"arg2Of","subj":"T22811","obj":"T22792"},{"id":"R16430","pred":"arg2Of","subj":"T22811","obj":"T22809"},{"id":"R16431","pred":"arg1Of","subj":"T22811","obj":"T22810"},{"id":"R16432","pred":"arg1Of","subj":"T22811","obj":"T22812"},{"id":"R16433","pred":"arg2Of","subj":"T22819","obj":"T22814"},{"id":"R16434","pred":"arg1Of","subj":"T22819","obj":"T22815"},{"id":"R16435","pred":"arg1Of","subj":"T22819","obj":"T22816"},{"id":"R16436","pred":"arg1Of","subj":"T22819","obj":"T22817"},{"id":"R16437","pred":"arg1Of","subj":"T22819","obj":"T22818"},{"id":"R16438","pred":"arg1Of","subj":"T22819","obj":"T22820"},{"id":"R16439","pred":"arg2Of","subj":"T22820","obj":"T22812"},{"id":"R16440","pred":"arg1Of","subj":"T22820","obj":"T22813"},{"id":"R16441","pred":"arg2Of","subj":"T22822","obj":"T22820"},{"id":"R16442","pred":"arg1Of","subj":"T22822","obj":"T22821"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T22715","span":{"begin":170,"end":207},"obj":"Protein"},{"id":"T22714","span":{"begin":58,"end":66},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T22985","span":{"begin":188,"end":198},"obj":"http://www.uniprot.org/uniprot/P08659"},{"id":"T22980","span":{"begin":170,"end":178},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T22979","span":{"begin":58,"end":66},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    sentences

    {"project":"sentences","denotations":[{"id":"T22693","span":{"begin":0,"end":240},"obj":"Sentence"},{"id":"T133","span":{"begin":0,"end":240},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    simple1

    {"project":"simple1","denotations":[{"id":"T22724","span":{"begin":170,"end":207},"obj":"Protein"},{"id":"T22723","span":{"begin":58,"end":66},"obj":"Protein"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T22973","span":{"begin":170,"end":207},"obj":"Protein"},{"id":"T22972","span":{"begin":58,"end":66},"obj":"Protein"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T23014","span":{"begin":132,"end":143},"obj":"Gene_expression"},{"id":"T23010","span":{"begin":170,"end":207},"obj":"Protein"},{"id":"T23009","span":{"begin":58,"end":66},"obj":"Protein"}],"relations":[{"id":"R16581","pred":"themeOf","subj":"T23010","obj":"T23014"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T22993","span":{"begin":170,"end":207},"obj":"Protein"},{"id":"T22992","span":{"begin":58,"end":66},"obj":"Protein"},{"id":"T22997","span":{"begin":132,"end":143},"obj":"Gene_expression"}],"relations":[{"id":"R16580","pred":"themeOf","subj":"T22993","obj":"T22997"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T23055","span":{"begin":25,"end":87},"obj":"Entity"},{"id":"T23076","span":{"begin":58,"end":66},"obj":"Protein"},{"id":"T23074","span":{"begin":93,"end":114},"obj":"Entity"},{"id":"T23070","span":{"begin":163,"end":198},"obj":"Protein"},{"id":"T23064","span":{"begin":170,"end":178},"obj":"Protein"},{"id":"T23061","span":{"begin":163,"end":198},"obj":"Entity"}],"relations":[{"id":"R16590","pred":"partOf","subj":"T23061","obj":"T23070"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T23022","span":{"begin":188,"end":198},"obj":"Protein"},{"id":"T23021","span":{"begin":163,"end":187},"obj":"Protein"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    testone

    {"project":"testone","denotations":[{"id":"T22670","span":{"begin":170,"end":207},"obj":"Protein"},{"id":"T22669","span":{"begin":58,"end":66},"obj":"Protein"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}

    test3

    {"project":"test3","denotations":[{"id":"T22686","span":{"begin":170,"end":207},"obj":"Protein"},{"id":"T22685","span":{"begin":58,"end":66},"obj":"Protein"},{"id":"T22678","span":{"begin":170,"end":207},"obj":"Protein"},{"id":"T22677","span":{"begin":58,"end":66},"obj":"Protein"}],"text":"Construct names indicate the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence. (B) RAW 264.7 macrophages were transiently transfected with the indicated murine SerpinB2 promoter-luciferase reporter constructs and control plasmids."}